BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002444
         (2861 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...   672   0.0  
emb|CBI26575.3| unnamed protein product [Vitis vinifera]              672   0.0  
ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|2...   578   e-162
ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus co...   568   e-159
ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [S...   484   e-134

>ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 834

 Score =  672 bits (1734), Expect = 0.0
 Identities = 336/537 (62%), Positives = 399/537 (74%), Gaps = 4/537 (0%)
 Frame = -3

Query: 2856 KAQQSVKDPQIRKSSLRIGWRERYKETKLIREVSGEEANDYISRQQFQFLNVWVLRDYLT 2677
            KA +  K+ + RK SL +  R + K+     EV GE+  D+ISRQ+FQFLN+W LRDYL 
Sbjct: 257  KAYRKDKNNKPRKDSLLVNKRGKSKQG----EVGGEDIEDFISRQKFQFLNIWTLRDYLA 312

Query: 2676 HDMQVPNSTVKLAVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFVLM 2497
            HDM +P+ ++K  +ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLLM VYKKEFV +
Sbjct: 313  HDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMTVYKKEFVQI 372

Query: 2496 GGYLTDSYKVNLKRVEHFVQAVSYHENAIFRKRRQVD----MRFQGGSNAQRRTSEESRK 2329
            GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN ++  S+ S  
Sbjct: 373  GGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN-KKTVSDYSTT 431

Query: 2328 LSHAKQNNSENFWSSINXXXXXXXXXXXXXXSDKSQGSGHNATPNGASTITDNIRLGEEG 2149
                 Q  + +  SS+                 + Q S  N    GA+++ D I+LGE+G
Sbjct: 432  PCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCST-NCISTGANSLVDKIKLGEDG 490

Query: 2148 WKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWQWFYPYHYAPFAS 1969
            WKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSWQWFYPYHYAPFAS
Sbjct: 491  WKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFYPYHYAPFAS 550

Query: 1968 DFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSSSPILDFYPTDFE 1789
            D   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM D +SPILDFYP DFE
Sbjct: 551  DIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMMDETSPILDFYPADFE 610

Query: 1788 LDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLADEEKRRNSFGMDLLFVHISHPLAA 1609
            LDM GKR+ WQAICKLPFI+ESRLL EIAKVE TL D+EK RN  GMD LF+HIS PLA 
Sbjct: 611  LDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMDALFIHISDPLAV 670

Query: 1608 EIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFLYISDKPVWPLEVCSSINDMEKIAM 1429
            +I  F++R KDHPKL  AKVKR+IDPKFSGGMNG++YISD+PVWP E  S I DME IA 
Sbjct: 671  KIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVWPAEFYSPIEDMEMIAQ 730

Query: 1428 NKVISVFYKYPMSHTHIPRPPEGVVMPRMSVRKEDIFPAPVLWHEKSVVLGRLHSER 1258
            NKVIS+FYK P  H HIPRP EGV++P  +V K  +   PVLWHE S V GR  SER
Sbjct: 731  NKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWHETSAVCGRKFSER 787


>emb|CBI26575.3| unnamed protein product [Vitis vinifera]
          Length = 845

 Score =  672 bits (1734), Expect = 0.0
 Identities = 336/537 (62%), Positives = 399/537 (74%), Gaps = 4/537 (0%)
 Frame = -3

Query: 2856 KAQQSVKDPQIRKSSLRIGWRERYKETKLIREVSGEEANDYISRQQFQFLNVWVLRDYLT 2677
            KA +  K+ + RK SL +  R + K+     EV GE+  D+ISRQ+FQFLN+W LRDYL 
Sbjct: 238  KAYRKDKNNKPRKDSLLVNKRGKSKQG----EVGGEDIEDFISRQKFQFLNIWTLRDYLA 293

Query: 2676 HDMQVPNSTVKLAVERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMNVYKKEFVLM 2497
            HDM +P+ ++K  +ERLIDDFVF+CLFVGNDFLPH+PSLEISEGAIDLLM VYKKEFV +
Sbjct: 294  HDMSIPDRSLKTDLERLIDDFVFMCLFVGNDFLPHMPSLEISEGAIDLLMTVYKKEFVQI 353

Query: 2496 GGYLTDSYKVNLKRVEHFVQAVSYHENAIFRKRRQVD----MRFQGGSNAQRRTSEESRK 2329
            GGYLT+S +V L+RVE F+Q V  HENAIFRKR QV     +RFQG SN ++  S+ S  
Sbjct: 354  GGYLTNSSEVYLERVERFMQVVGSHENAIFRKRSQVQKKRGVRFQGSSN-KKTVSDYSTT 412

Query: 2328 LSHAKQNNSENFWSSINXXXXXXXXXXXXXXSDKSQGSGHNATPNGASTITDNIRLGEEG 2149
                 Q  + +  SS+                 + Q S  N    GA+++ D I+LGE+G
Sbjct: 413  PCVEPQGMTGSSGSSLEPRKTPFCQDSKNSTVKEIQCST-NCISTGANSLVDKIKLGEDG 471

Query: 2148 WKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSWQWFYPYHYAPFAS 1969
            WKERFY EKFE KTED+R+++R+HAVLKYIEG+CWVMHYYY+GVCSWQWFYPYHYAPFAS
Sbjct: 472  WKERFYVEKFEAKTEDDRERVRRHAVLKYIEGICWVMHYYYQGVCSWQWFYPYHYAPFAS 531

Query: 1968 DFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSSSPILDFYPTDFE 1789
            D   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM D +SPILDFYP DFE
Sbjct: 532  DIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMMDETSPILDFYPADFE 591

Query: 1788 LDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLADEEKRRNSFGMDLLFVHISHPLAA 1609
            LDM GKR+ WQAICKLPFI+ESRLL EIAKVE TL D+EK RN  GMD LF+HIS PLA 
Sbjct: 592  LDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMDALFIHISDPLAV 651

Query: 1608 EIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFLYISDKPVWPLEVCSSINDMEKIAM 1429
            +I  F++R KDHPKL  AKVKR+IDPKFSGGMNG++YISD+PVWP E  S I DME IA 
Sbjct: 652  KIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVWPAEFYSPIEDMEMIAQ 711

Query: 1428 NKVISVFYKYPMSHTHIPRPPEGVVMPRMSVRKEDIFPAPVLWHEKSVVLGRLHSER 1258
            NKVIS+FYK P  H HIPRP EGV++P  +V K  +   PVLWHE S V GR  SER
Sbjct: 712  NKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWHETSAVCGRKFSER 768


>ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|222857590|gb|EEE95137.1|
            predicted protein [Populus trichocarpa]
          Length = 692

 Score =  578 bits (1490), Expect = e-162
 Identities = 286/468 (61%), Positives = 345/468 (73%)
 Frame = -3

Query: 2751 EEANDYISRQQFQFLNVWVLRDYLTHDMQVPNSTVKLAVERLIDDFVFICLFVGNDFLPH 2572
            E   ++IS  +FQFLNVW+LR+YL +D+++P++T+K+ +ER+IDDFVF+CLFVGNDFLPH
Sbjct: 267  ENIENHISGMKFQFLNVWILREYLAYDLRIPDTTLKVDLERVIDDFVFMCLFVGNDFLPH 326

Query: 2571 VPSLEISEGAIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVSYHENAIFRKRRQ 2392
            +PSLEISEGAIDLLM VYKKEF  MGGYLT+S+++NL RVEHFVQA+  HE+AIFR+R Q
Sbjct: 327  IPSLEISEGAIDLLMTVYKKEFAQMGGYLTNSFEINLIRVEHFVQALGSHESAIFRRRNQ 386

Query: 2391 VDMRFQGGSNAQRRTSEESRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXSDKSQGSG 2212
            V +                        N+ E  +  I+                K Q + 
Sbjct: 387  VSL------------------------NDLEIRFQRIS----------------KRQQAF 406

Query: 2211 HNATPNGASTITDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHY 2032
            H++     S   D I+LG+EGWKER+Y EKFE K+EDERD IR+HAV KY+EG+CWVM Y
Sbjct: 407  HSSK----SLFDDGIKLGDEGWKERYYAEKFEAKSEDERDTIRRHAVFKYVEGICWVMRY 462

Query: 2031 YYEGVCSWQWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLC 1852
            YYEGVCSWQWFYPYHYAPFASDF   +  EIHFT G PFKPFDQLM VLPAASAHALPL 
Sbjct: 463  YYEGVCSWQWFYPYHYAPFASDFYGCDQLEIHFTLGEPFKPFDQLMAVLPAASAHALPLF 522

Query: 1851 YRELMTDSSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLADEE 1672
            YR+LM D+SSPILDFYPTDFELD  GKR +WQAICKLPFIEESRL+ EI KVEHTL DEE
Sbjct: 523  YRKLMIDASSPILDFYPTDFELDNNGKRFSWQAICKLPFIEESRLVSEITKVEHTLTDEE 582

Query: 1671 KRRNSFGMDLLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFLYIS 1492
            +RRN  G D+L VH+SHPLA ++I  FE  KD   L  A  K +IDPK SGGMNG++YIS
Sbjct: 583  RRRNRLGYDVLCVHVSHPLAVKVISLFE-CKDQSALPTANGKLKIDPKISGGMNGYIYIS 641

Query: 1491 DKPVWPLEVCSSINDMEKIAMNKVISVFYKYPMSHTHIPRPPEGVVMP 1348
            +KP WPL + S I+ M  IA  +VISVFY+YP  H+HIPR PEGV++P
Sbjct: 642  EKPEWPLGIFSPIDGMLMIASEQVISVFYEYPPFHSHIPRLPEGVILP 689


>ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223540756|gb|EEF42316.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 1545

 Score =  568 bits (1464), Expect = e-159
 Identities = 289/525 (55%), Positives = 368/525 (70%)
 Frame = -3

Query: 2739 DYISRQQFQFLNVWVLRDYLTHDMQVPNSTVKLAVERLIDDFVFICLFVGNDFLPHVPSL 2560
            +Y+SR  F+FL +W LR++L +DM++PN  ++  +ERLIDDF+F+CLFVGNDFLPH+P+L
Sbjct: 289  EYVSRLNFKFLYIWALREHLEYDMRIPNLALQTDLERLIDDFIFMCLFVGNDFLPHIPTL 348

Query: 2559 EISEGAIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAVSYHENAIFRKRRQVDMR 2380
            EIS+GAIDLLM VY+KEF  MGGYLT+S++++L RVEHF+QAV  H++AIFR+  Q    
Sbjct: 349  EISQGAIDLLMKVYRKEFRRMGGYLTNSFELDLTRVEHFIQAVGLHDDAIFRQHIQKLKE 408

Query: 2379 FQGGSNAQRRTSEESRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXSDKSQGSGHNAT 2200
                 +A++      RKL    QN+      SI+               +K+ G   +  
Sbjct: 409  ----KSARKEERSSKRKLEKLLQNDPHA--ESISGGSSLLM--------EKAGGMNFDEP 454

Query: 2199 PNGASTITDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEG 2020
             +  S   D     E+ WKER+Y +KF+ KT+DE++ IR+  V+KY+EG+CWVM YYYEG
Sbjct: 455  IHHLSAGIDTGDKEEDDWKERYYAKKFKAKTKDEQESIRRDVVIKYMEGLCWVMRYYYEG 514

Query: 2019 VCSWQWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYREL 1840
            VCSWQWFYPYHYAPFASDF  ++  +I FT G PFKP DQLMGVLPAASAHALP+ YR+L
Sbjct: 515  VCSWQWFYPYHYAPFASDFYGLDDLKIQFTLGVPFKPMDQLMGVLPAASAHALPMLYRKL 574

Query: 1839 MTDSSSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLADEEKRRN 1660
            MTD SSPILDFYP+DFELDM GKR  WQAICKLPFI+ESRLL EI KVEHTL D+E+RRN
Sbjct: 575  MTDESSPILDFYPSDFELDMNGKRRKWQAICKLPFIDESRLLSEITKVEHTLTDDERRRN 634

Query: 1659 SFGMDLLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFLYISDKPV 1480
            S G + LFVHISHPLA  II FF++N+D   L K      IDP+ SGGMNGF+YISD  V
Sbjct: 635  SLGSNFLFVHISHPLADMIIYFFKQNRDPNVLLK------IDPELSGGMNGFVYISDNAV 688

Query: 1479 WPLEVCSSINDMEKIAMNKVISVFYKYPMSHTHIPRPPEGVVMPRMSVRKEDIFPAPVLW 1300
             P EV S ++ M  IA N+VISV Y+YP+ H HI R P+GV++P   +       +P+L 
Sbjct: 689  CPEEVSSPVDGMRMIAHNRVISVSYRYPLFHYHISRLPQGVILPGKDI-------SPLLQ 741

Query: 1299 HEKSVVLGRLHSERPVPNSISGSCLAKLAHRLVLEYYTEKMKENV 1165
            HEK V  G + S RP+P S+SG+ LA LAHRLV      K  +N+
Sbjct: 742  HEKVVPAG-VSSRRPIPRSVSGTHLANLAHRLVSSCTPIKQDDNL 785


>ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [Sorghum bicolor]
            gi|241929576|gb|EES02721.1| hypothetical protein
            SORBIDRAFT_03g010040 [Sorghum bicolor]
          Length = 1066

 Score =  484 bits (1246), Expect = e-134
 Identities = 262/571 (45%), Positives = 344/571 (60%), Gaps = 53/571 (9%)
 Frame = -3

Query: 2751 EEANDYISRQQFQFLNVWVLRDYLTHDMQVPNSTVKLAVERLIDDFVFICLFVGNDFLPH 2572
            E+ +  + ++ +QFLN+W LR+YL ++ ++PN   K+  ER++DDF+F+C FVGNDFLPH
Sbjct: 290  EKGDAIVPKKPYQFLNIWTLREYLEYEFRMPNPPFKIDFERIVDDFIFMCFFVGNDFLPH 349

Query: 2571 VPSLEISEGAIDLLMNVYKKEFVLMGGYLTDSYKVNLKRVEHFVQAV-SYHENAIFRK-- 2401
            +P+LEI EGAI+LLM VYKKEF  MGGYLTDS   +L RVEHF+QAV SY +    ++  
Sbjct: 350  MPTLEIREGAINLLMAVYKKEFPSMGGYLTDSCTPDLSRVEHFIQAVGSYEDKIFQKRAR 409

Query: 2400 --RRQVD---------------------------MRFQGG------------SNAQRRTS 2344
              +RQ +                            RFQG              N   R +
Sbjct: 410  LHQRQAERIKRDKAQAKRGDDLDPHVRDDLIVPVQRFQGSRLASGAVPVPYQQNGSHRNN 469

Query: 2343 EE--SRKLSHAKQNNSENFWSSINXXXXXXXXXXXXXXSDKSQGSGHNATP------NGA 2188
            +E  SR    A+ + S +  S+                 ++ +    +A        N  
Sbjct: 470  KERNSRAPKVARVSTSGSSISAAIVEAENDLEAQERENKEELKSMLKDALREKSDIFNSD 529

Query: 2187 STITDNIRLGEEGWKERFYTEKFEVKTEDERDKIRKHAVLKYIEGMCWVMHYYYEGVCSW 2008
            +   D ++LGE GW+ER+Y EKF  +T ++ ++IR+  VLKY EG+CWVMHYYYEGVCSW
Sbjct: 530  NPDEDKVKLGEPGWRERYYEEKFGARTPEQIEEIRRDVVLKYTEGLCWVMHYYYEGVCSW 589

Query: 2007 QWFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDS 1828
            QWFYPYHYAPFASD   +    I F  GTPFKPFDQLMGV PAASAHALPL YR+LMTD 
Sbjct: 590  QWFYPYHYAPFASDLSGLGQLNIKFELGTPFKPFDQLMGVFPAASAHALPLQYRQLMTDP 649

Query: 1827 SSPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLADEEKRRNSFGM 1648
             SPI+DFYP DFE+DM GKR++WQ I KLPFI+E+RLL EI KVEHTL  EE RRNS   
Sbjct: 650  HSPIIDFYPIDFEVDMNGKRYSWQGIAKLPFIDEARLLAEIKKVEHTLTPEEARRNSIMF 709

Query: 1647 DLLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFLYISDKPVWPLE 1468
            D+LFV+ SHPL+  I     +    P   + ++K ++DP  SGGMNG++ +      P  
Sbjct: 710  DMLFVNGSHPLSPYIYSLNSKFGHLPDKKRNEIKEKLDPSASGGMNGYITLCSGDPCPPI 769

Query: 1467 VCSSINDMEKIAMNKVISVFYKYPMSHTHIPRPPEGVVMPRMSVRKEDIFPAPVLWHEKS 1288
              S ++ +E I  N+VI   YK P  H HI RPP GV++P+ +V   D+ P PVLWHE S
Sbjct: 770  FRSPVDGLEDIMDNQVICSIYKLPDHHKHIARPPVGVIIPKKTVEAGDLKPPPVLWHEDS 829

Query: 1287 VVLGRLHSERP-VPNSISGSCLAKLAHRLVL 1198
                  +S R   P +ISG  L + AHRLV+
Sbjct: 830  GRRPHDNSNRQNPPGAISGRQLGEAAHRLVI 860