BLASTX nr result
ID: Coptis25_contig00002389
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002389
(1589 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi... 538 e-150
ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|2... 501 e-139
gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides] 500 e-139
ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|2... 494 e-137
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,... 492 e-136
>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 538 bits (1387), Expect = e-150
Identities = 279/439 (63%), Positives = 331/439 (75%), Gaps = 4/439 (0%)
Frame = -1
Query: 1307 MNLSRKGFP-NNMTLNTAIKATALNPNAAEFVPFSLRSTPGSTSPGEAPAWDT-SGTSGK 1134
M+LS+KG P NN+ L++ K T LNPNAAEFVPF+LRS+ GSTS G+A A T SGT GK
Sbjct: 1 MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARFTPSGTLGK 60
Query: 1133 AVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSISDVGQ 954
A LDR+ESS+SNNSD+EAHQYWR LPDDITPDFK + E+E+Q L A LS+ D +
Sbjct: 61 AKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDSTE 120
Query: 953 NSSFSASLA--LNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNPWEKHF 780
S FSA LN+QQELSP + NS +K+RYSA+PY + SSA F LP+ PW+K
Sbjct: 121 TSRFSAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPWDKQI 180
Query: 779 PNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAAESLAE 600
+GDQ+L NGREG PYNGNS F+ D+L+EHA+ D+++++ +EFLA QFPGFAAESL E
Sbjct: 181 VHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAESLTE 240
Query: 599 VYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQNGLEK 420
VY+AN CDLN+TIEMLTQLELQVDGGF+QN+NSKTLSAP+LS DFP+L D QNGL K
Sbjct: 241 VYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQNGLPK 300
Query: 419 YAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKFERYXX 240
YAGD++QQ +PYRS DKDNL FK+ SS RGA +FASAV+K QDSG KF+R
Sbjct: 301 YAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFDRNGT 360
Query: 239 XXXXXXXXXXSQILASSYGGGQGRSTYGDRSQNYGSPRGAPVWVETGEAVANMYSELREE 60
S +LASSY G GR TYGDR QN GS R AP WVETGEAVANMYSELREE
Sbjct: 361 ADVNVGSSRSSHVLASSYNSGHGRGTYGDRLQNRGSARVAPAWVETGEAVANMYSELREE 420
Query: 59 ARDHARVRNAYFEQARQAY 3
ARDHAR+RNAYFEQA+QAY
Sbjct: 421 ARDHARLRNAYFEQAQQAY 439
>ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|222855432|gb|EEE92979.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 501 bits (1291), Expect = e-139
Identities = 266/444 (59%), Positives = 315/444 (70%), Gaps = 9/444 (2%)
Frame = -1
Query: 1307 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDTSG 1146
M+LS+KG N+ LN KAT LNPNAAEFVPFSLRS+ S S A + TSG
Sbjct: 1 MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60
Query: 1145 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 966
T GKAVLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + ++E+QG L A LS+
Sbjct: 61 TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120
Query: 965 DVGQ---NSSFSASLALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNP 795
D ++S + L +QQE SP+ + +S EK+RY + Y + SSA F LP+ P
Sbjct: 121 DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180
Query: 794 WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 615
W+K NGD +LGNGRE PYNGNS F ++L EHAI DD+EI+ + FLASQFPGFA
Sbjct: 181 WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240
Query: 614 ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQ 435
ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN NSKTLSAP+LSA DFPAL D+Q
Sbjct: 241 ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQ 300
Query: 434 NGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKF 255
NG KY GD+LQQ++ PYRS +KDN+ FK G S RGA +FASAV+K QDS K
Sbjct: 301 NGSSKYTGDDLQQASVPYRSSNKDNMLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKH 360
Query: 254 ERYXXXXXXXXXXXXSQILASSYGGGQGRSTYGDRSQNYGSPRGAPVWVETGEAVANMYS 75
+R S +L S+YGGG GR Y DR Q+ GS R APVW+ETGEAVANMYS
Sbjct: 361 DRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWLETGEAVANMYS 420
Query: 74 ELREEARDHARVRNAYFEQARQAY 3
E+REEARDHAR+RNAYFEQARQAY
Sbjct: 421 EMREEARDHARLRNAYFEQARQAY 444
>gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 581
Score = 500 bits (1288), Expect = e-139
Identities = 266/444 (59%), Positives = 314/444 (70%), Gaps = 9/444 (2%)
Frame = -1
Query: 1307 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDTSG 1146
M+LS+KG N+ LN KAT LNPNAAEFVPFSLRS+ S S A + TSG
Sbjct: 1 MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60
Query: 1145 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 966
T GKAVLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + ++E+QG L A LS+
Sbjct: 61 TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120
Query: 965 DVGQ---NSSFSASLALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSNP 795
D ++S + L +QQE SP+ + +S EK+RY + Y + SSA F LP+ P
Sbjct: 121 DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180
Query: 794 WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 615
W+K NGD +LGNGRE PYNGNS F ++L EHAI DD+EI+ + FLASQFPGFA
Sbjct: 181 WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240
Query: 614 ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESDSQ 435
ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN NSKTLSAP+LSA DFPAL D+Q
Sbjct: 241 ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQNTNSKTLSAPNLSALDFPALTVLDNQ 300
Query: 434 NGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQSKF 255
NG KY GD+LQQ++ PYRS +KDN FK G S RGA +FASAV+K QDS K
Sbjct: 301 NGSSKYTGDDLQQASVPYRSSNKDNTLLFKPGGSFSSRGAVDFASAVRKLASQDSSMWKH 360
Query: 254 ERYXXXXXXXXXXXXSQILASSYGGGQGRSTYGDRSQNYGSPRGAPVWVETGEAVANMYS 75
+R S +L S+YGGG GR Y DR Q+ GS R APVW+ETGEAVANMYS
Sbjct: 361 DRNGSADSTVGSSRSSHVLPSAYGGGHGRGIYADRLQSRGSGRQAPVWLETGEAVANMYS 420
Query: 74 ELREEARDHARVRNAYFEQARQAY 3
E+REEARDHAR+RNAYFEQARQAY
Sbjct: 421 EMREEARDHARLRNAYFEQARQAY 444
>ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|222865637|gb|EEF02768.1|
predicted protein [Populus trichocarpa]
Length = 583
Score = 494 bits (1273), Expect = e-137
Identities = 268/446 (60%), Positives = 315/446 (70%), Gaps = 11/446 (2%)
Frame = -1
Query: 1307 MNLSRKG-FPNNMTLNTAIKATALNPNAAEFVPFSLRSTP---GSTS--PGEAPAWDTSG 1146
MNLS+KG N+ L+ KAT LNPNAAEFVPFSLRS+ GSTS A TSG
Sbjct: 1 MNLSKKGSLTNDTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLATSG 60
Query: 1145 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 966
T GK+VLDR+ESSVSN SDDEAHQ+WR LPDDITPDFK + E+E+QG L A LS+
Sbjct: 61 TVGKSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMNEDESQGLGGLSLAGLSLH 120
Query: 965 DVGQNSSFSAS----LALNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSAGFATLPSN 798
D + F AS L +QQE SP I +S E +RY+ Y + +SA F LP+
Sbjct: 121 DSSEVPRFHASSRSGYVLTEQQEPSPHHINGSSFSENMRYAVASYGEDPTSASFLNLPTK 180
Query: 797 PWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFA 618
PW+K N DQ+L NGRE PYNGNS F ++L EHAI DD+EI+ +EFLASQFPGFA
Sbjct: 181 PWDKQIANSDQLLSNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFPGFA 240
Query: 617 AESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAP-SLSAFDFPALLESD 441
AESLAEVY+AN CDLNLTIEMLTQLELQVDGGFNQ NSKT+SAP +LSA DFPAL D
Sbjct: 241 AESLAEVYFANACDLNLTIEMLTQLELQVDGGFNQTTNSKTVSAPTNLSALDFPALTVPD 300
Query: 440 SQNGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAANFASAVKKFTPQDSGQS 261
+QNG KYAGD+LQQ+ PYRS +KDN+ FK+G+S RGA +FASAV+K QDS
Sbjct: 301 NQNGPSKYAGDDLQQAGIPYRSSNKDNMLVFKSGASFSSRGAVDFASAVRKLASQDSSMW 360
Query: 260 KFERYXXXXXXXXXXXXSQILASSYGGGQGRSTYGDRSQNYGSPRGAPVWVETGEAVANM 81
+R S +LAS+Y GG GR Y DRSQ+ GS + APVW+ETGEAVA+M
Sbjct: 361 NHDRNGSADSTVGSSRSSHVLASAYSGGHGRGIYADRSQSRGSGQAAPVWLETGEAVASM 420
Query: 80 YSELREEARDHARVRNAYFEQARQAY 3
YSE+REEARDHAR+RNAY EQARQAY
Sbjct: 421 YSEMREEARDHARIRNAYLEQARQAY 446
>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1439
Score = 492 bits (1266), Expect = e-136
Identities = 269/447 (60%), Positives = 318/447 (71%), Gaps = 12/447 (2%)
Frame = -1
Query: 1307 MNLSRKGFPNNMT-LNTAIKATALNPNAAEFVPFSLRSTP---GSTSPGEAPA--WDTSG 1146
M+LS+KG N T LN KATALNPNAAEFVPFSLRS GSTS A + TSG
Sbjct: 1 MSLSKKGSQTNTTKLNIPSKATALNPNAAEFVPFSLRSLSSPSGSTSNAAATTARFATSG 60
Query: 1145 TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 966
GKAVLDR+ESS+S SD+EAHQ+WR LPDDITPDFK + E+E+Q L A LS+
Sbjct: 61 PVGKAVLDRSESSISTTSDEEAHQFWRHQLPDDITPDFKVMGEDESQSLGGLSLAGLSLH 120
Query: 965 DVGQNSSFSASLA----LNKQQELSPQGIQHNSVIEKLRYSATPYVSEQSSA-GFATLPS 801
D + F AS+ L +QQE SP+ I +S EK+RY+ Y + +SA G+ LP+
Sbjct: 121 DSSEVPKFPASVGSGYILTEQQEPSPRHINGSSFSEKMRYAIASYGEDPTSAAGYLNLPT 180
Query: 800 NPWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGF 621
PW+K N D +LGNGRE PYNGNS FM D+L E AI D+ +++ ++FLAS FPGF
Sbjct: 181 KPWDKQIINNDHLLGNGREVHPYNGNSRRGFMNDMLGEQAIVDEPDMNPLDFLASHFPGF 240
Query: 620 AAESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQNLNSKTLSAPSLSAFDFPALLESD 441
AAESLAEVY+ANG DLNLTIEMLTQLELQVDGGFNQN+NSK LSAP+LSA DFPAL D
Sbjct: 241 AAESLAEVYFANGYDLNLTIEMLTQLELQVDGGFNQNMNSKALSAPNLSAMDFPALPVPD 300
Query: 440 SQNGLEKYAGDNLQQSTSPYRSVDKDNLFFFKTGSSAQPRGAA-NFASAVKKFTPQDSGQ 264
SQN KY+GD++QQS +PYRS DK+N+ FK+ SS RG A +FASAV+K QDSG
Sbjct: 301 SQNSPSKYSGDDIQQSGNPYRSSDKENILLFKSSSSTPSRGGAIDFASAVRKLASQDSGI 360
Query: 263 SKFERYXXXXXXXXXXXXSQILASSYGGGQGRSTYGDRSQNYGSPRGAPVWVETGEAVAN 84
K+ER S +LASSY G GR Y +R+QN GS R APVW+ETGEAVAN
Sbjct: 361 WKYERNGSADSAVGSSRSSHVLASSYSSGNGRGIYSERAQNRGSARAAPVWLETGEAVAN 420
Query: 83 MYSELREEARDHARVRNAYFEQARQAY 3
MYSELREEARDHAR+RNAYFEQARQAY
Sbjct: 421 MYSELREEARDHARLRNAYFEQARQAY 447