BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002353
         (1040 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27434.3| unnamed protein product [Vitis vinifera]               65   4e-08
ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat pro...    61   4e-07
ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    61   4e-07
ref|XP_003636673.1| F-box family protein [Medicago truncatula] g...    58   3e-06
ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    57   1e-05

>emb|CBI27434.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score = 64.7 bits (156), Expect = 4e-08
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
 Frame = +1

Query: 115 KILSGLHNVKKLSFEGSFVELVTRD---RELPTLQACCSLKHLQLNMHATKNQVQAITLL 285
           KI   L  V+KL  EG F+E +      + LP L     + HL     +  +++     L
Sbjct: 285 KIGRSLPAVEKLYLEGYFLEFLALGNVPKRLPILFNNLKVLHLDEMDFSNLDEILCSLCL 344

Query: 286 LRIYPNLQTLDILCYQGASPSSNKLNMEEYWRTEELSTRDVLKRLKEVQIRLHKGAEIEL 465
           +   PNL+ L ++ Y G      +  + EY+ T+ LS    LKRL++V++      E EL
Sbjct: 345 ITSSPNLEELRVVAYAG---DIARDAVVEYFGTQNLSHHS-LKRLQKVKMEEISNFEPEL 400

Query: 466 DLVRYLLGSADNLEKMSIKFLGD--NENRMRISMKLLTFTRVSPNAAIFFLQ 615
           + ++++L S+ +LE+M +    D   E+  ++  +L+ F R SP A + +LQ
Sbjct: 401 EFIKFILASSPSLEEMEVLRSEDTVGEDERKMWKELMRFRRASPKAEVIYLQ 452


>ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like
           [Glycine max]
          Length = 510

 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 24/216 (11%)
 Frame = +1

Query: 34  SIARIGLFPPSTSSNDANNEFC----DNYARKI------LSGLHNVKKLSFEGSFVELVT 183
           +I  + +F PS   N+    F     DN   K+      LSGL + + LS E   +E+++
Sbjct: 296 AITDMTMFGPSNLLNEVTVGFYVFTRDNILGKLQSAIDLLSGLSHARSLSLERQTIEILS 355

Query: 184 RDRELPTLQACCSLKHLQLNMHATKNQVQAITLLLRIYPNLQTLDILCYQGASPSSNKLN 363
            +  L   Q   +LKHL+L+    K+ V  +T L +  P L TL +           + N
Sbjct: 356 NNHLL--FQPFYNLKHLELHTGFNKSDVPGLTCLFKSSPTLDTLILKIIHEYRIERKEWN 413

Query: 364 M----------EEYWRTEELSTRDVLKRLKEVQIRLHKGAEIELDLVRYLLGSADNLEKM 513
                      E+YW ++  +    L+ LK V+I      E E+ L ++LL     LE+M
Sbjct: 414 RDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEM 473

Query: 514 SIKF----LGDNENRMRISMKLLTFTRVSPNAAIFF 609
            +        D   R +I  +++ F+  S NA + F
Sbjct: 474 ILHTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAF 509


>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
           gi|222858320|gb|EEE95867.1| f-box family protein
           [Populus trichocarpa]
          Length = 511

 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
 Frame = +1

Query: 10  SIQNLSSVSIARIGLFPPSTSSNDANNEFCDNYARKILSGLHNVKKLSFEGSFVELVTRD 189
           S+ NL+S+  A +G      + +    +   N+    LSGL +V  L+ +   VE+++  
Sbjct: 296 SLVNLTSLHEASVGFSLLHENLSVEKLQSVCNF----LSGLSHVHSLTLDSQCVEILSNK 351

Query: 190 RELPTL-QACCSLKHLQLNMHATKNQVQAITLLLRIYPNLQTLDILCYQGASPSSNKLNM 366
            ++  L     +LK L+L+    KN V  +  L R  P L TL +           + N 
Sbjct: 352 NDIINLLHPFNNLKVLELHTGFEKNNVPGLAFLFRSSPTLHTLILKIINDFKTERRQWNR 411

Query: 367 ----------EEYWRTEELSTRDVLKRLKEVQIRLHKGAEIELDLVRYLLGSADNLEKMS 516
                     E+YW ++  + R  L  LK V+I      E E+ L ++LL    +L++M+
Sbjct: 412 DLWDLSTSAEEQYWESQLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMT 471

Query: 517 IKFLG-----DNENRMRISMKLLTFTRVSPNAAIFFL 612
           +         D+  R ++  +++ F+  S NA I FL
Sbjct: 472 LCTANCCNFKDSLRRQKVRSQIMGFSWASSNAKIVFL 508


>ref|XP_003636673.1| F-box family protein [Medicago truncatula]
           gi|355502608|gb|AES83811.1| F-box family protein
           [Medicago truncatula]
          Length = 515

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
 Frame = +1

Query: 109 ARKILSGLHNVKKLSFEGSFVELVTRDRELPTLQACCSLKHLQLNMHATKNQVQAITLLL 288
           A    SGL +   L+     +E++++ + +  +Q   +LK L+L+    K+ VQA+  L 
Sbjct: 336 ANNFFSGLSHAHSLTLNTQTIEILSKYKFI--IQPFYNLKSLELHTSLNKSNVQALACLF 393

Query: 289 RIYPNLQTLDILCYQGASPSSNKLNM----------EEYWRTEELSTRDVLKRLKEVQIR 438
           R  P L T ++             N           E+YW ++  S +  L+ LK V+I+
Sbjct: 394 RSCPTLHTFNLEIINDYKIERKLWNRDLWDMTSTEEEQYWESQIPSLKSFLQHLKVVKIK 453

Query: 439 LHKGAEIELDLVRYLLGSADNLEKMSI----KFLGDNENRMRISMKLLTFTRVSPNAAIF 606
                  E+ LV++LL     LE+M +        D   R +I  +++ F+  S NA + 
Sbjct: 454 GFLDCANEVTLVKFLLKHGKGLEEMRLCTGHSNRRDTLRRQKIKSQMMGFSWASSNAKVE 513

Query: 607 F 609
           F
Sbjct: 514 F 514


>ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine
           max]
          Length = 427

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 2/208 (0%)
 Frame = +1

Query: 1   ENFSIQNLSSVSIARIGLFPPSTSSNDANNEFCDNYARKILSGLHNVKKLSFEGSFVE-L 177
           E+ S +N   +++  IGL+  +   N +      +   K    L +V++L  +  F++ L
Sbjct: 226 EDISFENTFQLAVVSIGLYL-NFEINQSRLHGGSSNLLKFFVHLPHVQRLEVQSYFLKYL 284

Query: 178 VTRDRELPTLQACCSLKHLQLNMHATK-NQVQAITLLLRIYPNLQTLDILCYQGASPSSN 354
                 +   + C  L +L + ++     ++ A   LLR  PNLQ L+IL    A P   
Sbjct: 285 AVGVVPIKLPRPCIDLSYLSIRINFNDLKEISASLCLLRSSPNLQELEIL----ARPEEQ 340

Query: 355 KLNMEEYWRTEELSTRDVLKRLKEVQIRLHKGAEIELDLVRYLLGSADNLEKMSIKFLGD 534
            + +   +  E++     + +L+ V+I    G + ELD + +LL  +  LE+M++K + +
Sbjct: 341 TVLLTHTYCWEDVYFSCPVMQLRYVKIDGISGIKPELDFINFLLLHSPVLERMTVKPVAN 400

Query: 535 NENRMRISMKLLTFTRVSPNAAIFFLQP 618
               + +  +LL F R S  A I +L+P
Sbjct: 401 --VGLELMKELLRFRRASGQAEIIYLEP 426