BLASTX nr result
ID: Coptis25_contig00002342
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002342
(256 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana] 82 5e-14
ref|XP_002519191.1| pentatricopeptide repeat-containing protein,... 82 5e-14
ref|NP_188886.1| pentatricopeptide repeat-containing protein [Ar... 82 5e-14
ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|2... 82 6e-14
gb|ABQ50548.1| hypothetical protein [Brassica rapa] 80 1e-13
>dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 82.0 bits (201), Expect = 5e-14
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = -2
Query: 255 AKRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFT 76
AKR+D +++F+E+ KG PNTITY+TL+ GFC+SG++ AKEL ++M++ G P T
Sbjct: 427 AKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 486
Query: 75 YSSLIHGLFRNGCSAEAMELFRVME 1
Y L+ GL NG +A+E+F M+
Sbjct: 487 YGILLDGLCDNGELNKALEIFEKMQ 511
Score = 66.6 bits (161), Expect = 2e-09
Identities = 33/82 (40%), Positives = 49/82 (59%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
+ D ++ +EM + P+ +T+S LID F K G++L AKEL +MI G PD TY+
Sbjct: 324 KWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYN 383
Query: 69 SLIHGLFRNGCSAEAMELFRVM 4
SLI G + C EA ++F +M
Sbjct: 384 SLIDGFCKENCLHEANQMFDLM 405
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/83 (38%), Positives = 50/83 (60%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
R+ +AV + M +P+ +T STLI+G C G V A L+ M+ G +PD+ TY
Sbjct: 184 RVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 243
Query: 69 SLIHGLFRNGCSAEAMELFRVME 1
+++ L ++G SA A++LFR ME
Sbjct: 244 PVLNRLCKSGNSALALDLFRKME 266
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = -2
Query: 240 KAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLI 61
+A +++ EM +G P+TITY++LIDGFCK + A ++ M++ G +PD TYS LI
Sbjct: 362 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 421
Query: 60 HGLFRNGCSAEAMELFR 10
+ + + M LFR
Sbjct: 422 NSYCKAKRVDDGMRLFR 438
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = -2
Query: 204 GFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLIHGLFRNGCSAEA 25
G++P+TIT+STL++GFC G V A L+ M+ ++PD T S+LI+GL G +EA
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 223
Query: 24 MEL 16
+ L
Sbjct: 224 LVL 226
>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 719
Score = 82.0 bits (201), Expect = 5e-14
Identities = 40/81 (49%), Positives = 54/81 (66%)
Frame = -2
Query: 246 MDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSS 67
MDKA FKEMQ KG PN +T++TLIDG+CK GE+ +++LL ++ G KPD FT+SS
Sbjct: 478 MDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSS 537
Query: 66 LIHGLFRNGCSAEAMELFRVM 4
+I GL R +A+ F M
Sbjct: 538 IIDGLCRAKQIEDALGCFSEM 558
Score = 58.9 bits (141), Expect = 4e-07
Identities = 28/80 (35%), Positives = 48/80 (60%)
Frame = -2
Query: 240 KAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLI 61
+++++ ++MQ G P+ +++ LI FC+ G+V AK+L M++ G PD +TY + I
Sbjct: 585 RSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFI 644
Query: 60 HGLFRNGCSAEAMELFRVME 1
++G EA ELF ME
Sbjct: 645 KVFCQSGRFNEAKELFLSME 664
Score = 58.5 bits (140), Expect = 5e-07
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = -2
Query: 255 AKRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFT 76
AK+++ A+ F EM + G PN +TY+ LI C G+V + +LL+ M G PD F+
Sbjct: 545 AKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFS 604
Query: 75 YSSLIHGLFRNGCSAEAMELFRVM 4
+++LI R G +A +LF M
Sbjct: 605 FNALIQSFCRMGKVEDAKKLFSSM 628
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = -2
Query: 246 MDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSS 67
+D A F++M KP+ TY+ LI G C+SG V A L+K M G P+ FTY+
Sbjct: 233 LDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTI 292
Query: 66 LIHGLFRNGCSAEAMELFRVME 1
LI G F + + E FRV+E
Sbjct: 293 LIDGFFN---AKKVDEAFRVLE 311
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = -2
Query: 231 QVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLIHGL 52
++F ++ G P+T Y+ +ID KS + +A + M A KPD+FTY+ LIHG+
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262
Query: 51 FRNGCSAEAMELFRVME 1
R+G EA+ L + ME
Sbjct: 263 CRSGVVDEALRLVKQME 279
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = -2
Query: 246 MDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSS 67
+D+A+++ K+M+ G+ PN TY+ LIDGF + +V A +L+ M A P + T S
Sbjct: 268 VDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRS 327
Query: 66 LIHGLFRNGCSAEAMEL 16
IHG+FR +A EL
Sbjct: 328 FIHGVFRCVAPNKAFEL 344
>ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis
thaliana] gi|51968798|dbj|BAD43091.1| hypothetical
protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 82.0 bits (201), Expect = 5e-14
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = -2
Query: 255 AKRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFT 76
AKR+D +++F+E+ KG PNTITY+TL+ GFC+SG++ AKEL ++M++ G P T
Sbjct: 398 AKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Query: 75 YSSLIHGLFRNGCSAEAMELFRVME 1
Y L+ GL NG +A+E+F M+
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQ 482
Score = 66.6 bits (161), Expect = 2e-09
Identities = 33/82 (40%), Positives = 49/82 (59%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
+ D ++ +EM + P+ +T+S LID F K G++L AKEL +MI G PD TY+
Sbjct: 295 KWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYN 354
Query: 69 SLIHGLFRNGCSAEAMELFRVM 4
SLI G + C EA ++F +M
Sbjct: 355 SLIDGFCKENCLHEANQMFDLM 376
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/83 (38%), Positives = 50/83 (60%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
R+ +AV + M +P+ +T STLI+G C G V A L+ M+ G +PD+ TY
Sbjct: 155 RVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 214
Query: 69 SLIHGLFRNGCSAEAMELFRVME 1
+++ L ++G SA A++LFR ME
Sbjct: 215 PVLNRLCKSGNSALALDLFRKME 237
Score = 58.2 bits (139), Expect = 7e-07
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = -2
Query: 240 KAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLI 61
+A +++ EM +G P+TITY++LIDGFCK + A ++ M++ G +PD TYS LI
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392
Query: 60 HGLFRNGCSAEAMELFR 10
+ + + M LFR
Sbjct: 393 NSYCKAKRVDDGMRLFR 409
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/63 (44%), Positives = 42/63 (66%)
Frame = -2
Query: 204 GFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLIHGLFRNGCSAEA 25
G++P+TIT+STL++GFC G V A L+ M+ ++PD T S+LI+GL G +EA
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 24 MEL 16
+ L
Sbjct: 195 LVL 197
>ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|222855677|gb|EEE93224.1|
predicted protein [Populus trichocarpa]
Length = 597
Score = 81.6 bits (200), Expect = 6e-14
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = -2
Query: 255 AKRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFT 76
AKR+D+A+Q+F EM +G PN ++Y+TLI GFC+ G++ A++L ++M G PD FT
Sbjct: 386 AKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFT 445
Query: 75 YSSLIHGLFRNGCSAEAMELFRVME 1
YS L+ G + G +A LFR M+
Sbjct: 446 YSILLDGFCKQGYLGKAFRLFRAMQ 470
Score = 68.2 bits (165), Expect = 7e-10
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = -2
Query: 240 KAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLI 61
+AV++F +M KG +P+ TY+T+I+G CK GE A LLK M G +P+ TYS+LI
Sbjct: 181 QAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLI 240
Query: 60 HGLFRNGCSAEAMELFRVME 1
L R+ EA+++F M+
Sbjct: 241 DSLCRDRLVNEALDIFSYMK 260
Score = 67.4 bits (163), Expect = 1e-09
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = -2
Query: 252 KRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTY 73
+R+D V ++ G +P +T++TLI+G CK GE A EL DM+A G +PD +TY
Sbjct: 142 QRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTY 201
Query: 72 SSLIHGLFRNGCSAEAMELFRVME 1
+++I+GL + G +A A L + ME
Sbjct: 202 NTIINGLCKIGETAAAAGLLKKME 225
Score = 62.4 bits (150), Expect = 4e-08
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = -2
Query: 240 KAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLI 61
+A ++F M KG KPN +Y+ LI+G+CK+ + A +L +MI G P+ +Y++LI
Sbjct: 356 EARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLI 415
Query: 60 HGLFRNGCSAEAMELFRVM 4
HG + G EA +LFR M
Sbjct: 416 HGFCQLGKLREAQDLFRNM 434
Score = 60.8 bits (146), Expect = 1e-07
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = -2
Query: 246 MDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSS 67
+ KA ++F+ MQ KPN + Y+ L+ CKSG A++L ++ G +P Y++
Sbjct: 459 LGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTT 518
Query: 66 LIHGLFRNGCSAEAMELFRVME 1
+I+GL + G EA+E FR ME
Sbjct: 519 IINGLCKEGLLDEALEAFRNME 540
Score = 57.0 bits (136), Expect = 2e-06
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = -2
Query: 237 AVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYSSLIH 58
A + K+M+ G +PN +TYSTLID C+ V A ++ M A G PD FTY+SLI
Sbjct: 217 AAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276
Query: 57 GLFRNGCSAEAMELFRVM 4
GL + EA L M
Sbjct: 277 GLCKFSRWKEASALLNEM 294
Score = 55.8 bits (133), Expect = 4e-06
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
R +A + EM P+ +T++ L+D FCK G+V A +LK M G +P+ TYS
Sbjct: 283 RWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342
Query: 69 SLIHGLFRNGCSAEAMELFRVM 4
SL++G EA +LF VM
Sbjct: 343 SLMYGYSLWTDVVEARKLFHVM 364
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = -2
Query: 249 RMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFTYS 70
++ +A+ V K M G +PN +TYS+L+ G+ +V+ A++L MI G KP+ F+Y+
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377
Query: 69 SLIHGLFRNGCSAEAMELFRVM 4
LI+G + EAM+LF M
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEM 399
>gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 80.5 bits (197), Expect = 1e-13
Identities = 36/85 (42%), Positives = 61/85 (71%)
Frame = -2
Query: 255 AKRMDKAVQVFKEMQLKGFKPNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPDQFT 76
AK +D+ ++VF+E+ L+G +T+TY+TL+ GFC++G++ VAKEL ++M++ G +PD T
Sbjct: 59 AKLVDEGMRVFREISLRGLVADTVTYNTLVQGFCEAGKLDVAKELFQEMVSQGARPDIVT 118
Query: 75 YSSLIHGLFRNGCSAEAMELFRVME 1
Y L+ GL NG EA+++ M+
Sbjct: 119 YRILLDGLCDNGELQEALDILEKMQ 143