BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002339
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525805.1| pentatricopeptide repeat-containing protein,...    88   6e-16
ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat...    84   2e-14
ref|XP_003629614.1| Pentatricopeptide repeat-containing protein ...    83   2e-14
ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat...    82   4e-14
emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]    82   4e-14

>ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534892|gb|EEF36579.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 182

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 43/94 (45%), Positives = 63/94 (67%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           M+ N +K D + YNII+DGMCK GK+++AKE+F TL    LQ  + RTYN++I     EG
Sbjct: 51  MQKNTLKLDCVAYNIIVDGMCKAGKLNDAKELFSTLPIEGLQ-PDVRTYNILIKVFCNEG 109

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQGCLVH 284
           + +EA  +F EM+E G   D  ++N+++QG L H
Sbjct: 110 SLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRH 143


>ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 39/95 (41%), Positives = 62/95 (65%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           ME + +  +++IY+I++DGMC  GK++ A E+F +L  + LQ IN  TY +MI G  ++G
Sbjct: 453 MEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQ-INVYTYTIMIKGLCKQG 511

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQGCLVHK 287
           +  +A+DL   M+E G   D+ T+N+ VQG L  K
Sbjct: 512 SLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKK 546



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/88 (37%), Positives = 48/88 (54%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           ME    K +V++Y+ I+DG+CKDG +SEA  +   +S + ++  N  TY  +I G    G
Sbjct: 208 MEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVR-PNLVTYACLIQGLCNFG 266

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMV 266
             KE   L  EM + G   D  T NI+V
Sbjct: 267 RWKETGSLLDEMIKMGMRLDLQTLNILV 294


>ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523636|gb|AET04090.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 47/127 (37%), Positives = 75/127 (59%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           ME + +  +++IY+II+DGMC  GK++ A E+F  L A+ LQ IN   Y +MI+G  ++G
Sbjct: 452 MEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQ-INVYAYTIMINGFAKQG 510

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQGCLVHKRKLLNLVTFSAAKFHDQKSSATLT* 362
              +A+DL   M+E G   D  T+N+ VQG LV +R++   + +      D+  S   T 
Sbjct: 511 LLDKAEDLLSNMEENGCMPDSCTYNVFVQG-LVAEREIARSIKY-LTMMRDKGFSVDATT 568

Query: 363 EDMINNH 383
            +MI N+
Sbjct: 569 TEMIINY 575



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/88 (35%), Positives = 48/88 (54%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           ME      +V++Y+ ++DG+CKDG +SEA  +   +S + ++  N  TY  +I G    G
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIK-PNLVTYTCLIQGLCNFG 265

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMV 266
             KEA  L  EM + G   D  + NI+V
Sbjct: 266 RWKEAGSLLDEMMKMGVMPDLQSLNILV 293



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           +E  G ++DV  Y ++I+G+CK GK SEA    R +  R+    N   Y+ ++ G  ++G
Sbjct: 172 VEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWN-PNVVVYSTVMDGLCKDG 230

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQG 272
              EA  L  EM  KG   +  T+  ++QG
Sbjct: 231 LVSEALGLCLEMSGKGIKPNLVTYTCLIQG 260


>ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 42/98 (42%), Positives = 60/98 (61%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           +E + M  D+ IY I+IDGMC+ G++  A++IF  LS++ L+  N RTY +MI+G  R G
Sbjct: 444 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRP-NVRTYTIMINGLCRRG 502

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQGCLVHKRKL 296
              EA  LF EM   G + D  T+N + QG L +K  L
Sbjct: 503 LLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEAL 540



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 52/90 (57%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           M N+ +  DV+I++ ++D +CK+GKI+EA ++   +  R ++  N  TYN ++ G   + 
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE-PNVVTYNALMDGHCLQS 328

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQG 272
              EA  +F  M   G+A +  ++N ++ G
Sbjct: 329 EMDEAVKVFDTMVHNGYAPNVISYNTLING 358


>emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 42/98 (42%), Positives = 60/98 (61%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           +E + M  D+ IY I+IDGMC+ G++  A++IF  LS++ L+  N RTY +MI+G  R G
Sbjct: 443 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRP-NVRTYTIMINGLCRRG 501

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQGCLVHKRKL 296
              EA  LF EM   G + D  T+N + QG L +K  L
Sbjct: 502 LLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEAL 539



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 52/90 (57%)
 Frame = +3

Query: 3   MENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLSARDLQLINTRTYNVMISGCFREG 182
           M N+ +  DV+I++ ++D +CK+GKI+EA ++   +  R ++  N  TYN ++ G   + 
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE-PNVVTYNALMDGHCLQS 326

Query: 183 NSKEAQDLFYEMQEKGFAADDFTFNIMVQG 272
              EA  +F  M   G+A +  ++N ++ G
Sbjct: 327 EMDEAVKVFDTMVHNGYAPNVISYNTLING 356