BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002297
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274498.1| PREDICTED: 50S ribosomal protein L1, chlorop...   438   e-120
emb|CBI24963.3| unnamed protein product [Vitis vinifera]              431   e-118
ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|2...   427   e-117
gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides]      427   e-117
ref|XP_002517771.1| 50S ribosomal protein L1p, putative [Ricinus...   425   e-116

>ref|XP_002274498.1| PREDICTED: 50S ribosomal protein L1, chloroplastic [Vitis vinifera]
          Length = 347

 Score =  438 bits (1127), Expect = e-120
 Identities = 237/347 (68%), Positives = 269/347 (77%), Gaps = 6/347 (1%)
 Frame = -1

Query: 1311 ASSSSALILTHRTPITVLPPEE---ASFCYKVKPFF--FSSFK-TLSINQSRPRTSWPCF 1150
            A+S  +L+LT+    + LP ++    S  +K KP F  FS +   L   + RP       
Sbjct: 5    ATSPFSLMLTYAAS-SPLPTQDFIAPSLSFKTKPLFRAFSLYPLALQARERRP------- 56

Query: 1149 FNGNNQLLFVTSAVSTQAQVXXXXXXXXXXLAASVQXXXXXXXXXXXXXXXXKSDRTRSK 970
             +GN     V +A++ +A+V             +V                 K DRTRSK
Sbjct: 57   -SGNGPYDVVVAALAAEAEVAEAVEEVEGGEGDAVSTAPPPKPKKGKAALLLKRDRTRSK 115

Query: 969  RFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATVNLP 790
            RFLEIQKLRENKKEYD+ TA+SLLK+MA T+FVETAEAHFRLNIDPKYNDQQLRATVNLP
Sbjct: 116  RFLEIQKLRENKKEYDLQTAISLLKQMASTRFVETAEAHFRLNIDPKYNDQQLRATVNLP 175

Query: 789  KGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPKVAS 610
            KGTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG MDFDKLIASPDMMPKVAS
Sbjct: 176  KGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVAS 235

Query: 609  LGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSDEDLI 430
            LGK+LGPRGLMPNPKAGTVTT+IPQAIAEFKKGKVEYRADKTGIVHLPFGKADFS+EDL+
Sbjct: 236  LGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSEEDLL 295

Query: 429  INLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFK 289
             NL+AAVKSV+TNKPSGAKGVYW+SAH+CSSMGPSIRLNIREMLD+K
Sbjct: 296  ANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYK 342


>emb|CBI24963.3| unnamed protein product [Vitis vinifera]
          Length = 343

 Score =  431 bits (1109), Expect = e-118
 Identities = 220/286 (76%), Positives = 242/286 (84%)
 Frame = -1

Query: 1146 NGNNQLLFVTSAVSTQAQVXXXXXXXXXXLAASVQXXXXXXXXXXXXXXXXKSDRTRSKR 967
            +GN     V +A++ +A+V             +V                 K DRTRSKR
Sbjct: 53   SGNGPYDVVVAALAAEAEVAEAVEEVEGGEGDAVSTAPPPKPKKGKAALLLKRDRTRSKR 112

Query: 966  FLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPK 787
            FLEIQKLRENKKEYD+ TA+SLLK+MA T+FVETAEAHFRLNIDPKYNDQQLRATVNLPK
Sbjct: 113  FLEIQKLRENKKEYDLQTAISLLKQMASTRFVETAEAHFRLNIDPKYNDQQLRATVNLPK 172

Query: 786  GTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPKVASL 607
            GTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG MDFDKLIASPDMMPKVASL
Sbjct: 173  GTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASL 232

Query: 606  GKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSDEDLII 427
            GK+LGPRGLMPNPKAGTVTT+IPQAIAEFKKGKVEYRADKTGIVHLPFGKADFS+EDL+ 
Sbjct: 233  GKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSEEDLLA 292

Query: 426  NLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFK 289
            NL+AAVKSV+TNKPSGAKGVYW+SAH+CSSMGPSIRLNIREMLD+K
Sbjct: 293  NLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYK 338


>ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|222845674|gb|EEE83221.1|
            predicted protein [Populus trichocarpa]
          Length = 355

 Score =  427 bits (1099), Expect = e-117
 Identities = 231/351 (65%), Positives = 263/351 (74%), Gaps = 7/351 (1%)
 Frame = -1

Query: 1317 ACASSSSALILTHRTPITVLPPEEASFCYKVKPFFFSSFKTLSINQSRPRTSWPCFFNGN 1138
            AC S++S+L+LT+    TV P +        KP   S +  +S    R  ++W  F+   
Sbjct: 5    ACTSTTSSLMLTYAAS-TVHPQDLTPSLLSFKPKTLSLYPLVS---ERKSSNWVKFYAQT 60

Query: 1137 NQL-----LFVTSAVSTQAQVXXXXXXXXXXLAASVQXXXXXXXXXXXXXXXXK--SDRT 979
                    + V +A++ +A+V              V                     DRT
Sbjct: 61   EAKSRPCRVVVAAALAAEAEVGEEVEETEGEEGGGVATATVIPPKPKKGKAALPLKRDRT 120

Query: 978  RSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATV 799
            RSKRFLEIQKLRE KKEYD+  A+SLLK+ A TKFVE+AEAHFRLNIDPKYNDQQLRATV
Sbjct: 121  RSKRFLEIQKLREIKKEYDLGAAISLLKKTASTKFVESAEAHFRLNIDPKYNDQQLRATV 180

Query: 798  NLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPK 619
            NLPKGTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG M+FDKLIASPDMMPK
Sbjct: 181  NLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIQQIKGGYMEFDKLIASPDMMPK 240

Query: 618  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSDE 439
            VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVH+PFGKADFS+E
Sbjct: 241  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSEE 300

Query: 438  DLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 286
            DL++NL+AAVKSV+ NKPSGAKGVYWKSAH+CSSMGPSIRLN REMLD+KL
Sbjct: 301  DLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLDYKL 351


>gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 355

 Score =  427 bits (1098), Expect = e-117
 Identities = 230/351 (65%), Positives = 263/351 (74%), Gaps = 7/351 (1%)
 Frame = -1

Query: 1317 ACASSSSALILTHRTPITVLPPEEASFCYKVKPFFFSSFKTLSINQSRPRTSWPCFFNGN 1138
            AC S++S+L+LT+    TV P +        KP   S +  +S    R  ++W  F+   
Sbjct: 5    ACTSTTSSLMLTYAAS-TVHPQDLTPSLLSFKPKTLSLYPLVS---ERKSSNWVKFYAQT 60

Query: 1137 NQL-----LFVTSAVSTQAQVXXXXXXXXXXLAASVQXXXXXXXXXXXXXXXXK--SDRT 979
                    + V +A++ +A+V              V                     DRT
Sbjct: 61   EAKSRPCRVVVAAALAAEAEVGEEVEETEGEEGGGVATATVIPPKPKKGKAALPLKRDRT 120

Query: 978  RSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATV 799
            RSKRFLEIQKLRE KKEYD+  A+SLLK+ A TKFVE+AEAHFRLNIDPKYNDQQLRATV
Sbjct: 121  RSKRFLEIQKLREIKKEYDLGAAISLLKKTASTKFVESAEAHFRLNIDPKYNDQQLRATV 180

Query: 798  NLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPK 619
            NLPKGTGQT+KVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG M+FDKLIASPDMMPK
Sbjct: 181  NLPKGTGQTIKVAVLTQGEKFDEAKNAGADLVGGEDLIQQIKGGYMEFDKLIASPDMMPK 240

Query: 618  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSDE 439
            VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVH+PFGKADFS+E
Sbjct: 241  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSEE 300

Query: 438  DLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 286
            DL++NL+AAVKSV+ NKPSGAKGVYWKSAH+CSSMGPSIRLN REMLD+KL
Sbjct: 301  DLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLDYKL 351


>ref|XP_002517771.1| 50S ribosomal protein L1p, putative [Ricinus communis]
            gi|223543043|gb|EEF44578.1| 50S ribosomal protein L1p,
            putative [Ricinus communis]
          Length = 360

 Score =  425 bits (1092), Expect = e-116
 Identities = 231/354 (65%), Positives = 265/354 (74%), Gaps = 11/354 (3%)
 Frame = -1

Query: 1314 CASSSSALILTHRTPITVLPPEEASFCYKVKP-FFFSSFKTLSINQSRPRTSWPCFFN-- 1144
            C SS S+L+LT+    TV P +        KP  FF +   L  N  R  +    F+   
Sbjct: 4    CTSSPSSLMLTYGAS-TVHPQDLTPSLLSFKPKTFFLNPLALGSNGDRKSSKSFNFYTQK 62

Query: 1143 -------GNNQLLFVTSAVSTQAQVXXXXXXXXXXL-AASVQXXXXXXXXXXXXXXXXKS 988
                   G    + V +A++ +A+V             A+                  K 
Sbjct: 63   DAKIGTCGGGGGVVVAAALAAEAEVADDVEEREEGGDVATATVAAPSKPKKGKAALPLKR 122

Query: 987  DRTRSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLR 808
            DR RSKRFLEIQKLRENK+EYD+ TA+SLLK+MA +KFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 123  DRARSKRFLEIQKLRENKQEYDLQTAISLLKQMATSKFVETAEAHFRLNIDPKYNDQQLR 182

Query: 807  ATVNLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDM 628
            ATVNLPKGTGQTVKVAVLTQGEK DEAK+AGAD+VGG+DLI QIKGG MDFDKLIASPDM
Sbjct: 183  ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADMVGGEDLIEQIKGGFMDFDKLIASPDM 242

Query: 627  MPKVASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHLPFGKADF 448
            MPKVASLGKILGPRGLMPNPKAGTV T+IPQAIAEFKKGKVEYRADKTGIVH+PFGKADF
Sbjct: 243  MPKVASLGKILGPRGLMPNPKAGTVATNIPQAIAEFKKGKVEYRADKTGIVHIPFGKADF 302

Query: 447  SDEDLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 286
            S++DL++NL AA+KS++TNKPSGAKGVYWKSAH+CSSMGPSIRLNIREML++KL
Sbjct: 303  SEDDLLVNLHAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLEYKL 356