BLASTX nr result

ID: Coptis25_contig00002294 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002294
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF50334.1| hypothetical protein [Crucihimalaya wallichii] g...    71   1e-10
dbj|BAF50245.1| hypothetical protein [Capsella bursa-pastoris] g...    71   1e-10
emb|CAF28642.1| ycf68 [Nymphaea alba] gi|50250389|emb|CAF28655.1...    62   8e-08

>dbj|BAF50334.1| hypothetical protein [Crucihimalaya wallichii]
           gi|134286725|dbj|BAF50348.1| hypothetical protein
           [Crucihimalaya wallichii] gi|134286888|dbj|BAF50509.1|
           hypothetical protein [Lepidium virginicum]
           gi|134286902|dbj|BAF50523.1| hypothetical protein
           [Lepidium virginicum] gi|134286977|dbj|BAF50597.1|
           hypothetical protein [Lobularia maritima]
           gi|134286991|dbj|BAF50611.1| hypothetical protein
           [Lobularia maritima]
          Length = 111

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/50 (68%), Positives = 39/50 (78%)
 Frame = -1

Query: 372 YVFPRGLEKAAINRVSLILPTRKEVHEILFPFCRDQSIASRRTKNAWSLS 223
           + FP GLEKAAINR+ LILP+RKE  EILFPF RDQ I S R KNAW ++
Sbjct: 34  HAFPGGLEKAAINRIFLILPSRKEEREILFPFRRDQEIGSSRKKNAWLIN 83


>dbj|BAF50245.1| hypothetical protein [Capsella bursa-pastoris]
           gi|134286635|dbj|BAF50259.1| hypothetical protein
           [Capsella bursa-pastoris]
          Length = 111

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/50 (68%), Positives = 39/50 (78%)
 Frame = -1

Query: 372 YVFPRGLEKAAINRVSLILPTRKEVHEILFPFCRDQSIASRRTKNAWSLS 223
           + FP GLEKAAINR+ LILP+RKE  EILFPF RDQ I S R KNAW ++
Sbjct: 34  HAFPGGLEKAAINRIFLILPSRKEEREILFPFRRDQEIGSSRKKNAWLIN 83


>emb|CAF28642.1| ycf68 [Nymphaea alba] gi|50250389|emb|CAF28655.1| ycf68 [Nymphaea
           alba]
          Length = 101

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 32/49 (65%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
 Frame = -1

Query: 372 YVFPRGLEKAAINRVSLILPT--RKEVHEILFPFCRDQSIASRRTKNAW 232
           + FP GLEKAAINR+SLI P+  RKE  EILFPF  DQ I S   KNAW
Sbjct: 51  HAFPGGLEKAAINRISLIFPSRKRKEEREILFPFRGDQEIGSSHKKNAW 99


Top