BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002250
         (395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   171   6e-41
ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   163   2e-38
ref|NP_191418.2| pentatricopeptide repeat-containing protein [Ar...   161   6e-38
emb|CAB68197.1| putative protein [Arabidopsis thaliana]               161   6e-38
ref|XP_002876469.1| pentatricopeptide repeat-containing protein ...   159   2e-37

>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  171 bits (433), Expect = 6e-41
 Identities = 81/131 (61%), Positives = 100/131 (76%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           LALGS+IHG +IK NFS CD FVCN+L+DMY KCG + SSVK+FN M  +NL +WTALIS
Sbjct: 561 LALGSSIHGFLIKNNFSSCDTFVCNVLLDMYGKCGCLRSSVKIFNSMRDRNLITWTALIS 620

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXXXXXXXLFGRMKGYNVEP 36
           ALG++     ALERF++ME  G++PD+VAFIAVL+ACRH         LF +MK Y +EP
Sbjct: 621 ALGINSCAHEALERFKDMEHQGLRPDKVAFIAVLTACRHGALVGEGIELFKKMKSYGLEP 680

Query: 35  EMDHYICVVDL 3
           EMDHY C+VDL
Sbjct: 681 EMDHYHCLVDL 691



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/97 (30%), Positives = 51/97 (52%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L  G  IH  + K  F    + V N ++ +Y KC ++  + K F E   K++ +W  +I 
Sbjct: 231 LEFGEQIHSLVTKTGFDYT-VSVVNSVISVYVKCATLHLAEKKFEEAACKDIVTWNTMIV 289

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 105
           AL     P  ALE F +M    I+P+++ F +++S+C
Sbjct: 290 ALAKSEKPIKALELFFKMPRDAIRPNQITFASLISSC 326


>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
           predicted protein [Populus trichocarpa]
          Length = 737

 Score =  163 bits (412), Expect = 2e-38
 Identities = 77/131 (58%), Positives = 101/131 (77%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           LALGS+IHG +IK NFS  D+ V N+L+DMY KCG++ESS K+F+ M ++NL +WTALIS
Sbjct: 560 LALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSAKIFDSMTERNLITWTALIS 619

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXXXXXXXLFGRMKGYNVEP 36
           ALG++G    ALERF +ME +G +PD+VAFIAVL+ACRH         LFG+M  Y++EP
Sbjct: 620 ALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRHGALVREGMQLFGKMNNYHIEP 679

Query: 35  EMDHYICVVDL 3
           +MDHY C+VDL
Sbjct: 680 DMDHYHCLVDL 690



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/97 (36%), Positives = 56/97 (57%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L  G  IHG +IK     C++ V N L++MYA+  SM    K+F E+  +++ +W  +IS
Sbjct: 230 LEFGGQIHGLVIKSGLD-CEVLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIIS 288

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 105
           A      P  ALE F +M   GI P++  F++V+++C
Sbjct: 289 AFSKSKNPGKALEVFLKMSEDGIMPNQTTFVSVINSC 325



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -1

Query: 386 GSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALISALG 207
           G  +HG ++K      D+++ + LVD YAKCG ++++   F E+ +KN+ SW +LI    
Sbjct: 334 GEYVHGKIVKTALET-DVYLGSALVDYYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYA 392

Query: 206 LH-GFPCVALERFREMESVGIKPDRVAFIAVLSA 108
               F  V+L    EM  +G +P+  +F AVL +
Sbjct: 393 NKCSFASVSL--LLEMLKLGFRPNEFSFSAVLKS 424



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
 Frame = -1

Query: 386 GSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALISALG 207
           G  +    IK      D+FV   L+ ++ +CG ++ +  VF +MP K+L +W ++IS LG
Sbjct: 131 GIMLQALAIKNGLFCSDVFVGTALLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLG 190

Query: 206 LHGF--PCVALERFREMESVGIKPDRVAFIAVLS 111
            HGF   CV L  FR++        + +F  VLS
Sbjct: 191 HHGFVEDCVVL--FRKLVRKEGSLSKCSFEGVLS 222


>ref|NP_191418.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525906|sp|Q0WN01.2|PP286_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g58590 gi|332646281|gb|AEE79802.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  161 bits (407), Expect = 6e-38
 Identities = 77/131 (58%), Positives = 96/131 (73%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KVF E  +KNL +WTALIS
Sbjct: 561 LTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALIS 620

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXXXXXXXLFGRMKGYNVEP 36
            LG+HG+   ALE+F+E  S+G KPDRV+FI++L+ACRH         LF +MK Y VEP
Sbjct: 621 CLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKMKDYGVEP 680

Query: 35  EMDHYICVVDL 3
           EMDHY C VDL
Sbjct: 681 EMDHYRCAVDL 691



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/97 (35%), Positives = 50/97 (51%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L+ G  IHG +IK N     + + N L+D YAKCG++E S   F+ +  KN+  W AL+S
Sbjct: 332 LSCGRQIHGMLIK-NGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLS 390

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 105
                  P + L  F +M  +G +P    F   L +C
Sbjct: 391 GYANKDGP-ICLSLFLQMLQMGFRPTEYTFSTALKSC 426



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%)
 Frame = -1

Query: 386 GSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALISALG 207
           G+ +HG  +K      D FV   L+ +Y +   +E + +VF +MP K+L +W  ++S LG
Sbjct: 132 GTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLG 191

Query: 206 LHGFPCVALERFREMESVGIKPDRVAFIAVL 114
             GF    +  FRE+  +G      +F+ VL
Sbjct: 192 HRGFLKECMFFFRELVRMGASLTESSFLGVL 222


>emb|CAB68197.1| putative protein [Arabidopsis thaliana]
          Length = 810

 Score =  161 bits (407), Expect = 6e-38
 Identities = 77/131 (58%), Positives = 96/131 (73%)
 Frame = -1

Query: 395  LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
            L LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KVF E  +KNL +WTALIS
Sbjct: 630  LTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALIS 689

Query: 215  ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXXXXXXXLFGRMKGYNVEP 36
             LG+HG+   ALE+F+E  S+G KPDRV+FI++L+ACRH         LF +MK Y VEP
Sbjct: 690  CLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKMKDYGVEP 749

Query: 35   EMDHYICVVDL 3
            EMDHY C VDL
Sbjct: 750  EMDHYRCAVDL 760



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/97 (35%), Positives = 50/97 (51%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L+ G  IHG +IK N     + + N L+D YAKCG++E S   F+ +  KN+  W AL+S
Sbjct: 401 LSCGRQIHGMLIK-NGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLS 459

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 105
                  P + L  F +M  +G +P    F   L +C
Sbjct: 460 GYANKDGP-ICLSLFLQMLQMGFRPTEYTFSTALKSC 495



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%)
 Frame = -1

Query: 386 GSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALISALG 207
           G+ +HG  +K      D FV   L+ +Y +   +E + +VF +MP K+L +W  ++S LG
Sbjct: 201 GTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLG 260

Query: 206 LHGFPCVALERFREMESVGIKPDRVAFIAVL 114
             GF    +  FRE+  +G      +F+ VL
Sbjct: 261 HRGFLKECMFFFRELVRMGASLTESSFLGVL 291


>ref|XP_002876469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322307|gb|EFH52728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score =  159 bits (402), Expect = 2e-37
 Identities = 75/131 (57%), Positives = 97/131 (74%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L LGS+IHG + K +FS  D FVCN+L+DMY KCGS+ S +KVF E  +KNL +WTALIS
Sbjct: 561 LTLGSSIHGLITKTDFSCVDTFVCNVLIDMYGKCGSIRSVIKVFEETREKNLITWTALIS 620

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSACRHXXXXXXXXXLFGRMKGYNVEP 36
           +LG++G+   ALE+F+E  S+G KPDRV+FI++L+ACRH         LF +MK Y +EP
Sbjct: 621 SLGIYGYGHEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMDLFQKMKDYGIEP 680

Query: 35  EMDHYICVVDL 3
           EMDHY C VDL
Sbjct: 681 EMDHYRCAVDL 691



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/97 (38%), Positives = 53/97 (54%)
 Frame = -1

Query: 395 LALGSAIHGHMIKMNFSRCDLFVCNILVDMYAKCGSMESSVKVFNEMPKKNLFSWTALIS 216
           L+ G  IHG +IK N  + D+F+ N L+D YAKCGS+E S   F+ +  KN+  W AL+S
Sbjct: 332 LSFGRQIHGMLIK-NGCKTDIFLGNALIDFYAKCGSLEDSHLCFDYIRDKNIVCWNALLS 390

Query: 215 ALGLHGFPCVALERFREMESVGIKPDRVAFIAVLSAC 105
                  P + L  F +M  +G +P    F   L +C
Sbjct: 391 GYSNKDGP-ICLSLFLQMLQMGFRPTEYTFSTTLKSC 426