BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002203
         (3726 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACC60969.1| phytochrome A [Vitis riparia]                         1782   0.0  
ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera] g...  1780   0.0  
ref|NP_001234490.1| alternative transcript type 3 [Solanum lycop...  1724   0.0  
ref|XP_003591274.1| Phytochrome A [Medicago truncatula] gi|35548...  1706   0.0  
dbj|BAL45559.1| Phytochrome A2 [Glycine soja] gi|371940246|dbj|B...  1697   0.0  

>gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1782 bits (4615), Expect = 0.0
 Identities = 879/1116 (78%), Positives = 987/1116 (88%)
 Frame = -1

Query: 3621 KHSARVIAQTTVDAKLHAQFEESGSSFDYSRTVCVSNAGSVQQQPKSDKLTTAYLHQIQK 3442
            KHSAR+IAQTTVDAKLHA FEESGSSFDYS +V  + AG   QQP+SDK+TTAYLH IQK
Sbjct: 17   KHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGG-DQQPRSDKVTTAYLHHIQK 75

Query: 3441 GKHIQPFGCLLALDDKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLRTIFTSP 3262
            GK IQPFG LLALDDKT KVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTD+RTIF+ P
Sbjct: 76   GKLIQPFGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGP 135

Query: 3261 SASALQKALGFNDVSLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEIPMTAAG 3082
            SASAL KALGF +VSLLNPILVHCKTSGKPFYAI HRVTGSLIIDFEPVKPYE+PMTAAG
Sbjct: 136  SASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAG 195

Query: 3081 ALQSYKLAAKAITRLQSLPGGSMERLCDAVVQEVYELTGYDRVMAYKFHEDDHGEVVSEV 2902
            ALQSYKLAAKAITRLQSLP GS+ERLCD +VQEV+ELTGYDRVMAYKFH+DDHGEVVSE+
Sbjct: 196  ALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEI 255

Query: 2901 TKQGLEPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLSFDLTLCGSA 2722
            TK GLEPYLGLHYPATDIPQAARFLFMKNK+RMICDCRAKH++VLQDEKL FDLTLCGS 
Sbjct: 256  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGST 315

Query: 2721 LRAPHSCHMQYMENMDSIASLVMAVVVNDGDEDDESTRPSQPQKRKRLWGLVVCHNTTPR 2542
            LRAPHSCH+QYMENM+SIASLVMAVVVNDGDE+ ES+   QPQKRKRLWGLVVCH+TTPR
Sbjct: 316  LRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPR 375

Query: 2541 FVPFPLRYACEFLIQVFAIHVSKEFELENQILEKNILRTQTLLCDMLMRNVPLGIVSQSP 2362
            FVPFPLRYACEFL QVFAIHV+KE ELE+QILEKNILRTQTLLCDMLMR+ PLGIVSQSP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSP 435

Query: 2361 NIMDLVKCDGAALLYKNKIWRLGSSPNEIQIRDIASWLSDYHMDSTGLSSDSLYDAGFPG 2182
            N+MDLVKCDGAALLYKNK+WRLG +P++ Q+ DI SWLS+YHMDSTGLS+DSLYDAG+PG
Sbjct: 436  NVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPG 495

Query: 2181 ALSIADTVCGMAAVRINSKDMLFWFRSHTAAEVRWGGAKHDPGEKDDGRKMHPRSSFKAF 2002
            AL++ D VCGMAAV+I SKD LFWFRSHTAAEVRWGGAKH+PGEKDDGRKMHPRSSFKAF
Sbjct: 496  ALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAF 555

Query: 2001 LEVVKTRSAPWKDYEMDAIHSLQLILRSAFKDIETTDGNTKAIHSQLDDLKINGMEELEA 1822
            LEVVKTRS PWKDYEMDAIHSLQLILR+AFKD E  D NT AIH++L+DLKI GM+ELEA
Sbjct: 556  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEA 615

Query: 1821 VTNEMVRLIETATVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGLPVDEVIGKHFL 1642
            VT+EMVRLIETA+VPI                             LT LPVD+ IG H L
Sbjct: 616  VTSEMVRLIETASVPILAVDVDGLVNGWNTKISE-----------LTSLPVDKAIGMHLL 664

Query: 1641 KLVEGSSVDTVKRMLHLALIGKEEQNVHFEMKTHGSRKEIGPVSLVVNACASRDLQENVV 1462
             LVE SS DTVK+MLHLAL G+EEQNV FE+KTHGS+++ GP+SLVVNACASRDL ENVV
Sbjct: 665  TLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDENVV 724

Query: 1461 GVCFVAQDITSQKMVMDKFTRIEGDYKAILQNPSPLIPPIFGSDEFGWCCEWNPAMTKLS 1282
            GVCFVAQDITSQK VMDKFTRIEGDYKAI+QNP+PLIPPIFG+DEFGWC EWNPAM KLS
Sbjct: 725  GVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLS 784

Query: 1281 GWERSEMMDKMLLGEIFGTHMACCRLKNQEIFVNLGIVLNGAMMGEETEKVSFGFFGRNG 1102
            GW R E+MDKMLLGE+FGTHMACCRLKN+E FV LGIVLN  M G E+EKVSFGFF ++G
Sbjct: 785  GWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSG 844

Query: 1101 NYVDCLLSVSKKVDGEGAVTGVFCFLQIVSRELQQALHVQRLSEQTAVKKSKALAYMKRQ 922
             YV+CLLSVSKK+D EGAVTGVFCFLQ+ S+ELQQALH+QRLSEQTA+K+ KALAY+KRQ
Sbjct: 845  KYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQ 904

Query: 921  IRNPLSGIIFSRKMLEETDLGEEQKQLLHTSMHCQRQLHKVLNDTDLENIMDGYVDLEMV 742
            I+NPLSGIIFSRKM+E+TDLGEEQ+Q+LHTS  CQRQL K+L+D DL++I++GY+DLEMV
Sbjct: 905  IKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMV 964

Query: 741  EFTLQEVLFTSISQVKIKSDEKNLRISCDSLDEIMTEIFYGDRLRLQQVLADFILVSVKF 562
            EFTL+EVL  SISQV IKS+ K ++I  D+ + IMTE  YGD LRLQQVLADF+L+SV F
Sbjct: 965  EFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNF 1024

Query: 561  TPTGGQLGISASLTRDRLGESVHLARLKLRLTHSGGGIAEELLSEMFESDSDTSEDGISL 382
            TP GGQL ++ASL +DRLGESVHL  L+LR+TH+G G+ E+LL++MF ++ D SE+GISL
Sbjct: 1025 TPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISL 1084

Query: 381  LVCRKLLKLMNGDVQYLREAGKSSFIISVEFASAPK 274
            L+ RKL+KLMNGDVQYLREAGKS+FIIS+E A+A K
Sbjct: 1085 LISRKLVKLMNGDVQYLREAGKSTFIISIELAAARK 1120


>ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
            gi|147838424|emb|CAN76586.1| hypothetical protein
            VITISV_020287 [Vitis vinifera]
            gi|183239014|gb|ACC60965.1| phytochrome A [Vitis
            vinifera] gi|296089871|emb|CBI39690.3| unnamed protein
            product [Vitis vinifera]
          Length = 1124

 Score = 1780 bits (4611), Expect = 0.0
 Identities = 878/1116 (78%), Positives = 987/1116 (88%)
 Frame = -1

Query: 3621 KHSARVIAQTTVDAKLHAQFEESGSSFDYSRTVCVSNAGSVQQQPKSDKLTTAYLHQIQK 3442
            KHSAR+IAQTTVDAKLHA FEESGSSFDYS +V  + AG   QQP+SDK+TTAYLH IQK
Sbjct: 17   KHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGG-DQQPRSDKVTTAYLHHIQK 75

Query: 3441 GKHIQPFGCLLALDDKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLRTIFTSP 3262
            GK IQPFG LLALD+KT KVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTD+RTIF+ P
Sbjct: 76   GKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGP 135

Query: 3261 SASALQKALGFNDVSLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEIPMTAAG 3082
            SASAL KALGF +VSLLNPILVHCKTSGKPFYAI HRVTGSLIIDFEPVKPYE+PMTAAG
Sbjct: 136  SASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAG 195

Query: 3081 ALQSYKLAAKAITRLQSLPGGSMERLCDAVVQEVYELTGYDRVMAYKFHEDDHGEVVSEV 2902
            ALQSYKLAAKAITRLQSLP GS+ERLCD +VQEV+ELTGYDRVMAYKFH+DDHGEVVSE+
Sbjct: 196  ALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEI 255

Query: 2901 TKQGLEPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLSFDLTLCGSA 2722
            TK GLEPYLGLHYPATDIPQAARFLFMKNK+RMICDCRAKH++VLQDEKL FDLTLCGS 
Sbjct: 256  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGST 315

Query: 2721 LRAPHSCHMQYMENMDSIASLVMAVVVNDGDEDDESTRPSQPQKRKRLWGLVVCHNTTPR 2542
            LRAPHSCH+QYMENM+SIASLVMAVVVNDGDE+ ES+   QPQKRKRLWGLVVCH+TTPR
Sbjct: 316  LRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPR 375

Query: 2541 FVPFPLRYACEFLIQVFAIHVSKEFELENQILEKNILRTQTLLCDMLMRNVPLGIVSQSP 2362
            FVPFPLRYACEFL QVFAIHV+KE ELE+QILEKNILRTQTLLCDMLMR+ PLGIVSQSP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSP 435

Query: 2361 NIMDLVKCDGAALLYKNKIWRLGSSPNEIQIRDIASWLSDYHMDSTGLSSDSLYDAGFPG 2182
            N+MDLVKCDGAALLYKNK+WRLG +P++ Q+ DI SWLS+YHMDSTGLS+DSLYDAG+PG
Sbjct: 436  NVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPG 495

Query: 2181 ALSIADTVCGMAAVRINSKDMLFWFRSHTAAEVRWGGAKHDPGEKDDGRKMHPRSSFKAF 2002
            AL++ D VCGMAAV+I SKD LFWFRSHTAAEVRWGGAKH+PGEKDDGRKMHPRSSFKAF
Sbjct: 496  ALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAF 555

Query: 2001 LEVVKTRSAPWKDYEMDAIHSLQLILRSAFKDIETTDGNTKAIHSQLDDLKINGMEELEA 1822
            LEVVKTRS PWKDYEMDAIHSLQLILR+AFKD E  D NT AIH++L+DLKI GM+ELEA
Sbjct: 556  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEA 615

Query: 1821 VTNEMVRLIETATVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGLPVDEVIGKHFL 1642
            VT+EMVRLIETA+VPI                             LT LPVD+ IG H L
Sbjct: 616  VTSEMVRLIETASVPILAVDVDGLVNGWNTKISE-----------LTSLPVDKAIGMHLL 664

Query: 1641 KLVEGSSVDTVKRMLHLALIGKEEQNVHFEMKTHGSRKEIGPVSLVVNACASRDLQENVV 1462
             LVE SS DTVK+MLHLAL G+EEQNV FE+KTHGS+++ GP+SLVVNACASRDL ENVV
Sbjct: 665  TLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVV 724

Query: 1461 GVCFVAQDITSQKMVMDKFTRIEGDYKAILQNPSPLIPPIFGSDEFGWCCEWNPAMTKLS 1282
            GVCFVAQDITSQK VMDKFTRIEGDYKAI+QNP+PLIPPIFG+DEFGWC EWNPAM KLS
Sbjct: 725  GVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLS 784

Query: 1281 GWERSEMMDKMLLGEIFGTHMACCRLKNQEIFVNLGIVLNGAMMGEETEKVSFGFFGRNG 1102
            GW R E+MDKMLLGE+FGTHMACCRLKN+E FV LGIVLN  M G E+EKVSFGFF ++G
Sbjct: 785  GWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSG 844

Query: 1101 NYVDCLLSVSKKVDGEGAVTGVFCFLQIVSRELQQALHVQRLSEQTAVKKSKALAYMKRQ 922
             YV+CLLSVSKK+D EGAVTGVFCFLQ+ S+ELQQALH+QRLSEQTA+K+ KALAY+KRQ
Sbjct: 845  KYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQ 904

Query: 921  IRNPLSGIIFSRKMLEETDLGEEQKQLLHTSMHCQRQLHKVLNDTDLENIMDGYVDLEMV 742
            I+NPLSGIIFSRKM+E+TDLGEEQ+Q+LHTS  CQRQL K+L+D DL++I++GY+DLEMV
Sbjct: 905  IKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMV 964

Query: 741  EFTLQEVLFTSISQVKIKSDEKNLRISCDSLDEIMTEIFYGDRLRLQQVLADFILVSVKF 562
            EFTL+EVL  SISQV IKS+ K ++I  D+ + IMTE  YGD LRLQQVLADF+L+SV F
Sbjct: 965  EFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNF 1024

Query: 561  TPTGGQLGISASLTRDRLGESVHLARLKLRLTHSGGGIAEELLSEMFESDSDTSEDGISL 382
            TP GGQL ++ASL +DRLGESVHL  L+LR+TH+G G+ E+LL++MF ++ D SE+GISL
Sbjct: 1025 TPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISL 1084

Query: 381  LVCRKLLKLMNGDVQYLREAGKSSFIISVEFASAPK 274
            L+ RKL+KLMNGDVQYLREAGKS+FIIS+E A+A K
Sbjct: 1085 LISRKLVKLMNGDVQYLREAGKSTFIISIELAAARK 1120


>ref|NP_001234490.1| alternative transcript type 3 [Solanum lycopersicum]
            gi|3492795|emb|CAA05086.1| phyA [Solanum lycopersicum]
            gi|3492797|emb|CAA05087.1| phyA [Solanum lycopersicum]
            gi|3492799|emb|CAA05088.1| phyA [Solanum lycopersicum]
            gi|3492801|emb|CAA05089.1| phyA [Solanum lycopersicum]
          Length = 1123

 Score = 1724 bits (4465), Expect = 0.0
 Identities = 844/1114 (75%), Positives = 965/1114 (86%)
 Frame = -1

Query: 3621 KHSARVIAQTTVDAKLHAQFEESGSSFDYSRTVCVSNAGSVQQQPKSDKLTTAYLHQIQK 3442
            KHSAR++AQT++DAKLHA FEESG SFDYS +V V++    +++PKSDK+TTAYLHQIQK
Sbjct: 17   KHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQIQK 76

Query: 3441 GKHIQPFGCLLALDDKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLRTIFTSP 3262
            GK IQPFGCLLALD+KT KVIA+SENAPEMLTMVSHAVPSVGEHPVLGIGTD+RTIFT P
Sbjct: 77   GKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGTDIRTIFTGP 136

Query: 3261 SASALQKALGFNDVSLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEIPMTAAG 3082
            S +ALQKALGF +VSLLNP+LVHCK SGKPFYAI HRVTGSLI+DFEPVKPYE+PMTAAG
Sbjct: 137  SGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLILDFEPVKPYEVPMTAAG 196

Query: 3081 ALQSYKLAAKAITRLQSLPGGSMERLCDAVVQEVYELTGYDRVMAYKFHEDDHGEVVSEV 2902
            ALQSYKLAAKAITRLQSLP GSMERLCD +VQEV+ELTGYDRVM YKFHEDDHGEVVSE+
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVSEI 256

Query: 2901 TKQGLEPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLSFDLTLCGSA 2722
            TK GLEPYLGLHYPATDIPQAARFLFMKNK+RMICDCRAKHV+V+QDEKL FDLTLCGS 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGST 316

Query: 2721 LRAPHSCHMQYMENMDSIASLVMAVVVNDGDEDDESTRPSQPQKRKRLWGLVVCHNTTPR 2542
            LRAPH CH+QYMENM+SIASLVMAVVVNDGDE+ ES+  SQ QKRKRLWGLVVCHNTTPR
Sbjct: 317  LRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVCHNTTPR 376

Query: 2541 FVPFPLRYACEFLIQVFAIHVSKEFELENQILEKNILRTQTLLCDMLMRNVPLGIVSQSP 2362
            FVPFPLRYACEFL QVFAIHV+KE ELENQ LEKNILRTQTLLCDMLMR+ PLGIVSQSP
Sbjct: 377  FVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSP 436

Query: 2361 NIMDLVKCDGAALLYKNKIWRLGSSPNEIQIRDIASWLSDYHMDSTGLSSDSLYDAGFPG 2182
            NIMDLVKCDGAALLYKNKI RLG +P++ Q++DI SWL +YH DSTGLS+DSLYDAGFPG
Sbjct: 437  NIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGFPG 496

Query: 2181 ALSIADTVCGMAAVRINSKDMLFWFRSHTAAEVRWGGAKHDPGEKDDGRKMHPRSSFKAF 2002
            AL++ D VCGMAAVRI+ KD LFWFRSHTAAEVRWGGAKH+PGEKDDGRKMHPRSSFKAF
Sbjct: 497  ALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAF 556

Query: 2001 LEVVKTRSAPWKDYEMDAIHSLQLILRSAFKDIETTDGNTKAIHSQLDDLKINGMEELEA 1822
            LEVVKTRS PWKDYEMDAIHSLQLILR+AFKD E  + NT +I+ +L+DLKI+GM+ELE+
Sbjct: 557  LEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIYKKLNDLKIDGMQELES 616

Query: 1821 VTNEMVRLIETATVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGLPVDEVIGKHFL 1642
            VT EMVRLIETA VPI                             LTGLPVDE IGKH L
Sbjct: 617  VTAEMVRLIETALVPILAVDVDGQVNGWNTKIAE-----------LTGLPVDEAIGKHLL 665

Query: 1641 KLVEGSSVDTVKRMLHLALIGKEEQNVHFEMKTHGSRKEIGPVSLVVNACASRDLQENVV 1462
             LVE SSVDTV +ML LAL GKEE+NV FE+KTHG  ++  P+SL+VNACAS+D+++NVV
Sbjct: 666  TLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDVRDNVV 725

Query: 1461 GVCFVAQDITSQKMVMDKFTRIEGDYKAILQNPSPLIPPIFGSDEFGWCCEWNPAMTKLS 1282
            GVCF+A DIT QK +MDKFTRIEGDY+AI+QNP PLIPPIFG+D+FGWC EWN AMTKL+
Sbjct: 726  GVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLT 785

Query: 1281 GWERSEMMDKMLLGEIFGTHMACCRLKNQEIFVNLGIVLNGAMMGEETEKVSFGFFGRNG 1102
            GW R ++MDKMLLGE+FGT  ACCRLKNQE FVN G+VLN A+ G+E+EK+ FGFF R G
Sbjct: 786  GWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYG 845

Query: 1101 NYVDCLLSVSKKVDGEGAVTGVFCFLQIVSRELQQALHVQRLSEQTAVKKSKALAYMKRQ 922
             YV+CLL VSK++D EGAVTG+FCFLQ+ S ELQQAL+VQRLSEQTA+K+ K LAY++RQ
Sbjct: 846  KYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLAYIRRQ 905

Query: 921  IRNPLSGIIFSRKMLEETDLGEEQKQLLHTSMHCQRQLHKVLNDTDLENIMDGYVDLEMV 742
            IRNPLSGIIFSRKMLE T LGEEQK +LHTS  CQRQL+K+L+DTDL++I+DGY+DLEM+
Sbjct: 906  IRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEML 965

Query: 741  EFTLQEVLFTSISQVKIKSDEKNLRISCDSLDEIMTEIFYGDRLRLQQVLADFILVSVKF 562
            EF L EVL  SISQV +KS+ KN+ IS D +++++ E  YGD  RLQQVLA+F+LVSV  
Sbjct: 966  EFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNA 1025

Query: 561  TPTGGQLGISASLTRDRLGESVHLARLKLRLTHSGGGIAEELLSEMFESDSDTSEDGISL 382
            TP+GGQL IS  LT+DR+GESV LA L+ R+ H+GGG+ EELL +MF S++D SE+GISL
Sbjct: 1026 TPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASEEGISL 1085

Query: 381  LVCRKLLKLMNGDVQYLREAGKSSFIISVEFASA 280
            LV RKL+KLMNG+VQYLREAG+S+FIISVE A A
Sbjct: 1086 LVSRKLVKLMNGEVQYLREAGQSTFIISVELAVA 1119


>ref|XP_003591274.1| Phytochrome A [Medicago truncatula] gi|355480322|gb|AES61525.1|
            Phytochrome A [Medicago truncatula]
          Length = 1171

 Score = 1706 bits (4417), Expect = 0.0
 Identities = 842/1116 (75%), Positives = 965/1116 (86%)
 Frame = -1

Query: 3621 KHSARVIAQTTVDAKLHAQFEESGSSFDYSRTVCVSNAGSVQQQPKSDKLTTAYLHQIQK 3442
            ++SAR+IAQTTVDAKLHA FEESGSSFDYS +V VS +   + QP+S+K+TTAYL+ IQ+
Sbjct: 64   RNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQPRSNKVTTAYLNTIQR 123

Query: 3441 GKHIQPFGCLLALDDKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLRTIFTSP 3262
            GK IQPFGCLLALD+KTCKVIAYSENAPEMLTMVSHAVPSVG+HP LGIGTD+RTIFT+P
Sbjct: 124  GKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAP 183

Query: 3261 SASALQKALGFNDVSLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEIPMTAAG 3082
            SASALQKALGF +VSLLNPILVHCKTSGKPFYAI HRVTGSLIIDFEPVKPYE+PMTAAG
Sbjct: 184  SASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAG 243

Query: 3081 ALQSYKLAAKAITRLQSLPGGSMERLCDAVVQEVYELTGYDRVMAYKFHEDDHGEVVSEV 2902
            ALQSYKLAAKAITRLQSLP GSMERLCD +VQEV+ELTGYDRVMAYKFHEDDHGEV++EV
Sbjct: 244  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEV 303

Query: 2901 TKQGLEPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLSFDLTLCGSA 2722
            TK GLEPYLGLHYPATDIPQAARFLFMKNK+RMI DC AKHV+VLQDEKL FDLTLCGS 
Sbjct: 304  TKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGST 363

Query: 2721 LRAPHSCHMQYMENMDSIASLVMAVVVNDGDEDDESTRPSQPQKRKRLWGLVVCHNTTPR 2542
            LRAPHSCH+QYM NMDSIASLVMAVVVND DED +S     PQK+KRLWGLVVCHNTTPR
Sbjct: 364  LRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPR 423

Query: 2541 FVPFPLRYACEFLIQVFAIHVSKEFELENQILEKNILRTQTLLCDMLMRNVPLGIVSQSP 2362
            FVPFPLRYACEFL QVFAIHV+KE ELE QILEKNILRTQTLLCDMLMR+ PLGIVSQSP
Sbjct: 424  FVPFPLRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTLLCDMLMRDAPLGIVSQSP 483

Query: 2361 NIMDLVKCDGAALLYKNKIWRLGSSPNEIQIRDIASWLSDYHMDSTGLSSDSLYDAGFPG 2182
            NIMDLVKCDGAALLY+NK+W LG++P+E QIR+IA W+S+YH DSTGLS+DSL DAGFPG
Sbjct: 484  NIMDLVKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPG 543

Query: 2181 ALSIADTVCGMAAVRINSKDMLFWFRSHTAAEVRWGGAKHDPGEKDDGRKMHPRSSFKAF 2002
            AL + DTVCGMAAVRI SKD++FWFRSHTAAE+RWGGAKH+PGE+DDGRKMHPRSSFKAF
Sbjct: 544  ALKLNDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAF 603

Query: 2001 LEVVKTRSAPWKDYEMDAIHSLQLILRSAFKDIETTDGNTKAIHSQLDDLKINGMEELEA 1822
            LEVVK RS PWKD+EMDAIHSLQLILR+A KD +  D N+KAI+++L+DLKI GM+ELEA
Sbjct: 604  LEVVKARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTRLNDLKIEGMQELEA 663

Query: 1821 VTNEMVRLIETATVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGLPVDEVIGKHFL 1642
            VT+EMVRLIETATVPI                             LTGLPV E IGKH L
Sbjct: 664  VTSEMVRLIETATVPILAVDVDGMVNGWNIKISE-----------LTGLPVGEAIGKHLL 712

Query: 1641 KLVEGSSVDTVKRMLHLALIGKEEQNVHFEMKTHGSRKEIGPVSLVVNACASRDLQENVV 1462
             LVE SS D VK+ML+LAL G+EE+NV FE+KTHGS+ + GP+SL+VNACASRDL ENVV
Sbjct: 713  TLVEDSSTDIVKKMLNLALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACASRDLHENVV 772

Query: 1461 GVCFVAQDITSQKMVMDKFTRIEGDYKAILQNPSPLIPPIFGSDEFGWCCEWNPAMTKLS 1282
            GVCFVAQDIT+QK VMDKFTRIEGDYKAI+QNP+ LIPPIFG+DEFGWCCEWN AM K++
Sbjct: 773  GVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKIT 832

Query: 1281 GWERSEMMDKMLLGEIFGTHMACCRLKNQEIFVNLGIVLNGAMMGEETEKVSFGFFGRNG 1102
            GW+R E+MDKMLLGE+FGTHM+CCRLKNQE FVN GIVLN AM G ETEKV FGF  R G
Sbjct: 833  GWKREEVMDKMLLGEVFGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFLSRKG 892

Query: 1101 NYVDCLLSVSKKVDGEGAVTGVFCFLQIVSRELQQALHVQRLSEQTAVKKSKALAYMKRQ 922
             YV+CLLSVSKK+D EG VTGVFCFLQ+ S ELQQALH+QRLSEQTA+K+ K L YM+RQ
Sbjct: 893  KYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQ 952

Query: 921  IRNPLSGIIFSRKMLEETDLGEEQKQLLHTSMHCQRQLHKVLNDTDLENIMDGYVDLEMV 742
            IRNPLSGI+FS KMLE T+LG EQK++++TS  CQRQL K+L+D+DL++I+DGY+DLEM 
Sbjct: 953  IRNPLSGIVFSSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMA 1012

Query: 741  EFTLQEVLFTSISQVKIKSDEKNLRISCDSLDEIMTEIFYGDRLRLQQVLADFILVSVKF 562
            EFTL EVL TS+SQV  +S+ +++RI  D  + I  E  YGD LRLQQVLADF+L+S+  
Sbjct: 1013 EFTLHEVLVTSLSQVMNRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLLISINS 1072

Query: 561  TPTGGQLGISASLTRDRLGESVHLARLKLRLTHSGGGIAEELLSEMFESDSDTSEDGISL 382
            TP GGQ+ I+A+LT+++LG+SVHL  L+L +TH G G+AE +L++MF ++   SE+GISL
Sbjct: 1073 TPNGGQVVIAATLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISL 1132

Query: 381  LVCRKLLKLMNGDVQYLREAGKSSFIISVEFASAPK 274
             + RKLLKLMNGDV+YL+EAGKSSFI+SVE A+A K
Sbjct: 1133 HISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQK 1168


>dbj|BAL45559.1| Phytochrome A2 [Glycine soja] gi|371940246|dbj|BAL45560.1|
            Phytochrome A2 [Glycine soja]
            gi|371940248|dbj|BAL45561.1| Phytochrome A2 [Glycine
            soja] gi|371940250|dbj|BAL45562.1| Phytochrome A2
            [Glycine soja] gi|371940252|dbj|BAL45563.1| Phytochrome
            A2 [Glycine soja] gi|371940256|dbj|BAL45565.1|
            Phytochrome A2 [Glycine soja]
            gi|371940258|dbj|BAL45566.1| Phytochrome A2 [Glycine
            soja] gi|371940262|dbj|BAL45568.1| Phytochrome A2
            [Glycine soja]
          Length = 1123

 Score = 1697 bits (4395), Expect = 0.0
 Identities = 833/1114 (74%), Positives = 961/1114 (86%)
 Frame = -1

Query: 3621 KHSARVIAQTTVDAKLHAQFEESGSSFDYSRTVCVSNAGSVQQQPKSDKLTTAYLHQIQK 3442
            + SAR +A  TVDAKLHA FEESGSSFDYS +V +S       QP+ DK+TTAYLH +QK
Sbjct: 17   RRSARAMALATVDAKLHATFEESGSSFDYSSSVRISGTADGVNQPRHDKVTTAYLHHMQK 76

Query: 3441 GKHIQPFGCLLALDDKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLRTIFTSP 3262
            GK IQPFGCLLALD+KTCKVIAYSENAPEMLTMVSHAVPSVG+HP LGIGTD++T+FT+P
Sbjct: 77   GKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAP 136

Query: 3261 SASALQKALGFNDVSLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEIPMTAAG 3082
            SASALQKALGF +VSLLNP+L+HCKTSGKPFYAI HRVTGS+IIDFEPVKPYE+PMTAAG
Sbjct: 137  SASALQKALGFAEVSLLNPVLIHCKTSGKPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAG 196

Query: 3081 ALQSYKLAAKAITRLQSLPGGSMERLCDAVVQEVYELTGYDRVMAYKFHEDDHGEVVSEV 2902
            ALQSYKLAAKAITRLQSLP GSMERLCD +VQEV+ELTGYDRVMAYKFHEDDHGEV++E+
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEI 256

Query: 2901 TKQGLEPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLSFDLTLCGSA 2722
            TK GLEPYLGLHYPATDIPQA+RFLFMKNK+RMI DC AKHVRVLQDEKL FDLTLCGS 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGST 316

Query: 2721 LRAPHSCHMQYMENMDSIASLVMAVVVNDGDEDDESTRPSQPQKRKRLWGLVVCHNTTPR 2542
            LRAPHSCH QYM NMDSIASLVMAVVVND +ED + T   QPQKRKRLWGLVVCHNTTPR
Sbjct: 317  LRAPHSCHAQYMANMDSIASLVMAVVVNDNEEDGD-TDAIQPQKRKRLWGLVVCHNTTPR 375

Query: 2541 FVPFPLRYACEFLIQVFAIHVSKEFELENQILEKNILRTQTLLCDMLMRNVPLGIVSQSP 2362
            FVPFPLRYACEFL QVFAIHV+KE ELE QI+EKNILRTQTLLCD++MR+ PLGIVS+SP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESP 435

Query: 2361 NIMDLVKCDGAALLYKNKIWRLGSSPNEIQIRDIASWLSDYHMDSTGLSSDSLYDAGFPG 2182
            NIMDLVKCDGAAL+YKNK+WRLG +P+E QIR+IA WLS+YHMDSTG S+DSL DAGFP 
Sbjct: 436  NIMDLVKCDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPS 495

Query: 2181 ALSIADTVCGMAAVRINSKDMLFWFRSHTAAEVRWGGAKHDPGEKDDGRKMHPRSSFKAF 2002
            ALS+ D VCGMAAVR+ +KD++FWFRSHTAAE+RWGGAKH+ GEKDDGR+MHPRSSFK F
Sbjct: 496  ALSLGDVVCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVF 555

Query: 2001 LEVVKTRSAPWKDYEMDAIHSLQLILRSAFKDIETTDGNTKAIHSQLDDLKINGMEELEA 1822
            L+VVK RS PWK+YE+DA+HSLQLILR+AFKD E+ D NTKAI+++L DLKI GM+ELEA
Sbjct: 556  LDVVKARSLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEA 615

Query: 1821 VTNEMVRLIETATVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTGLPVDEVIGKHFL 1642
            VT+E+VRLIETATVPI                             LTGLPV E +GKH L
Sbjct: 616  VTSEIVRLIETATVPILAVDVDGLVNGWNIKIAE-----------LTGLPVGEAMGKHLL 664

Query: 1641 KLVEGSSVDTVKRMLHLALIGKEEQNVHFEMKTHGSRKEIGPVSLVVNACASRDLQENVV 1462
             LVE SS D VK+ML+LAL+G+EE+NV FE+KTHGS+ + GP+SLVVNACASRDL++NVV
Sbjct: 665  TLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVV 724

Query: 1461 GVCFVAQDITSQKMVMDKFTRIEGDYKAILQNPSPLIPPIFGSDEFGWCCEWNPAMTKLS 1282
            GVCFVA DIT+QK VMDKFTRIEGDYKAI+QN +PLIPPIFG+DEFGWCCEWNPAMTKL+
Sbjct: 725  GVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLT 784

Query: 1281 GWERSEMMDKMLLGEIFGTHMACCRLKNQEIFVNLGIVLNGAMMGEETEKVSFGFFGRNG 1102
            GW+R E+MDKMLLGE+FGTHMA CRLKNQE FVNLG+VLN AM G ETEKV FGFF RNG
Sbjct: 785  GWKREEVMDKMLLGELFGTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNG 844

Query: 1101 NYVDCLLSVSKKVDGEGAVTGVFCFLQIVSRELQQALHVQRLSEQTAVKKSKALAYMKRQ 922
             YV+CLLSVSKK+D EG VTGVFCFLQ+ S ELQQALH+QRLSEQTA+K+  AL+YMKRQ
Sbjct: 845  KYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQ 904

Query: 921  IRNPLSGIIFSRKMLEETDLGEEQKQLLHTSMHCQRQLHKVLNDTDLENIMDGYVDLEMV 742
            IRNPL GIIFSRKMLE T LG EQKQLL TS  CQ+QL K+L+D+DL++I+DGY+DLEM 
Sbjct: 905  IRNPLCGIIFSRKMLEGTALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMA 964

Query: 741  EFTLQEVLFTSISQVKIKSDEKNLRISCDSLDEIMTEIFYGDRLRLQQVLADFILVSVKF 562
            EFTL EVL TS+SQV  KS+ K++RI  D  ++I+ E  YGD LRLQQVLADF+L+S+ F
Sbjct: 965  EFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINF 1024

Query: 561  TPTGGQLGISASLTRDRLGESVHLARLKLRLTHSGGGIAEELLSEMFESDSDTSEDGISL 382
            TP GGQ+ ++ +LT+++LG+SVHL +L+L +TH G G+ E LL++MF ++   SE+GISL
Sbjct: 1025 TPNGGQVVVAGTLTKEQLGKSVHLVKLELSITHGGSGVPEALLNQMFGNNGLESEEGISL 1084

Query: 381  LVCRKLLKLMNGDVQYLREAGKSSFIISVEFASA 280
            L+ RKLLKLMNGDV+YLREAGKS+FI+S E A+A
Sbjct: 1085 LISRKLLKLMNGDVRYLREAGKSAFILSAELAAA 1118