BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002146
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   330   2e-88
ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2...   326   2e-87
ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonu...   324   8e-87
ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex s...   324   8e-87
ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab...   324   8e-87

>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
           vinifera]
          Length = 586

 Score =  330 bits (846), Expect = 2e-88
 Identities = 160/176 (90%), Positives = 170/176 (96%)
 Frame = -3

Query: 528 TPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRY 349
           T K  ++LIKPQSFTP+LDTSQWPILLKNYDRLNVRTGHYTPLPSG+SPLKRPL  YIRY
Sbjct: 33  TQKDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRY 92

Query: 348 GVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 169
           G++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA
Sbjct: 93  GILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 152

Query: 168 GKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1
           GKEYVC+ARLHS+VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 153 GKEYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 208


>ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score =  326 bits (836), Expect = 2e-87
 Identities = 161/180 (89%), Positives = 169/180 (93%)
 Frame = -3

Query: 540 PIVDTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLEL 361
           P  DT K  D++IKPQ+FTPT+DTSQWPILLKNYDRLNVRTGHYTPLPSG SPLKRPL  
Sbjct: 27  PTTDTDK--DFMIKPQNFTPTIDTSQWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAE 84

Query: 360 YIRYGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 181
           YIRYG++NLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKS
Sbjct: 85  YIRYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 144

Query: 180 QQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1
           QQGAGKEYVCIARLH  VPDV+KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 145 QQGAGKEYVCIARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 204


>ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
           subunit 4-like [Cucumis sativus]
          Length = 566

 Score =  324 bits (831), Expect = 8e-87
 Identities = 157/171 (91%), Positives = 166/171 (97%)
 Frame = -3

Query: 513 DYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINL 334
           D++IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTPLPSG+ PLKRPL  YIRYG++NL
Sbjct: 23  DFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNL 82

Query: 333 DKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 154
           DKPANPSSHEVVAWIKR+LR +KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 83  DKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 142

Query: 153 CIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1
           C+ARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 143 CVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 193


>ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
           [Cucumis sativus]
          Length = 564

 Score =  324 bits (831), Expect = 8e-87
 Identities = 157/171 (91%), Positives = 166/171 (97%)
 Frame = -3

Query: 513 DYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIRYGVINL 334
           D++IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTPLPSG+ PLKRPL  YIRYG++NL
Sbjct: 23  DFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNL 82

Query: 333 DKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 154
           DKPANPSSHEVVAWIKR+LR +KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 83  DKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 142

Query: 153 CIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1
           C+ARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 143 CVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 193


>ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
           gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
           ribonucleoprotein complex subunit 4; AltName: Full=CBF5
           homolog; AltName: Full=Dyskerin; AltName:
           Full=Nopp-140-associated protein of 57 kDa homolog;
           Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
           homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
           pseudouridine synthase [Arabidopsis thaliana]
           gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
           thaliana] gi|28392852|gb|AAO41863.1| unknown protein
           [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein
           complex subunit 4 [Arabidopsis thaliana]
          Length = 565

 Score =  324 bits (831), Expect = 8e-87
 Identities = 158/177 (89%), Positives = 167/177 (94%)
 Frame = -3

Query: 531 DTPKQNDYLIKPQSFTPTLDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLELYIR 352
           D     DY+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G SPLKRPL+ YIR
Sbjct: 20  DAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIR 79

Query: 351 YGVINLDKPANPSSHEVVAWIKRLLRCEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 172
           YGVINLDKPANPSSHEVVAWIKR+LR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG
Sbjct: 80  YGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 139

Query: 171 AGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLL 1
           AGKEYVC+ARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLL
Sbjct: 140 AGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLL 196