BLASTX nr result
ID: Coptis25_contig00002139
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002139
(704 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK42077.1| ubiquitin extension protein [Capsicum annuum] 265 7e-69
gb|AEQ75492.1| ubiquitin extension protein [Rosa multiflora] 264 1e-68
ref|XP_002266750.1| PREDICTED: ubiquitin-40S ribosomal protein S... 263 2e-68
ref|XP_003629895.1| Ubiquitin [Medicago truncatula] gi|355523917... 263 3e-68
ref|XP_002297752.1| predicted protein [Populus trichocarpa] gi|2... 263 3e-68
>gb|ABK42077.1| ubiquitin extension protein [Capsicum annuum]
Length = 179
Score = 265 bits (677), Expect = 7e-69
Identities = 134/160 (83%), Positives = 136/160 (85%)
Frame = -3
Query: 621 RKKKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 442
R+ KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 20 RQTKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 79
Query: 441 ADYNIQKESTLHLVLRLRGGAXXXXXXXXXXXXXXXXXXXXXKLAVLQFYKVDDSGKVQK 262
ADYNIQKESTLHLVLRLRGGA KLAVLQFYKVDDSGKVQ+
Sbjct: 80 ADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQR 139
Query: 261 LRKECPNQECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 142
LRKECPN ECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct: 140 LRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179
>gb|AEQ75492.1| ubiquitin extension protein [Rosa multiflora]
Length = 156
Score = 264 bits (675), Expect = 1e-68
Identities = 134/156 (85%), Positives = 134/156 (85%)
Frame = -3
Query: 609 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 430
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 429 IQKESTLHLVLRLRGGAXXXXXXXXXXXXXXXXXXXXXKLAVLQFYKVDDSGKVQKLRKE 250
IQKESTLHLVLRLRGGA KLAVLQFYKVDDSGKVQKLRKE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQKLRKE 120
Query: 249 CPNQECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 142
CPN ECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156
>ref|XP_002266750.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Vitis
vinifera] gi|359491770|ref|XP_003634320.1| PREDICTED:
ubiquitin-40S ribosomal protein S27a isoform 2 [Vitis
vinifera] gi|147836392|emb|CAN75420.1| hypothetical
protein VITISV_037877 [Vitis vinifera]
Length = 156
Score = 263 bits (673), Expect = 2e-68
Identities = 133/156 (85%), Positives = 134/156 (85%)
Frame = -3
Query: 609 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 430
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 429 IQKESTLHLVLRLRGGAXXXXXXXXXXXXXXXXXXXXXKLAVLQFYKVDDSGKVQKLRKE 250
IQKESTLHLVLRLRGGA KLAVLQFYKVDDSGKVQ+LRKE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
Query: 249 CPNQECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 142
CPN ECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD
Sbjct: 121 CPNSECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156
>ref|XP_003629895.1| Ubiquitin [Medicago truncatula] gi|355523917|gb|AET04371.1|
Ubiquitin [Medicago truncatula]
Length = 232
Score = 263 bits (672), Expect = 3e-68
Identities = 136/165 (82%), Positives = 137/165 (83%)
Frame = -3
Query: 645 VCSRTYNQRKKKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 466
VC NQR K MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct: 67 VCESCSNQRSK-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 125
Query: 465 QLEDGRTLADYNIQKESTLHLVLRLRGGAXXXXXXXXXXXXXXXXXXXXXKLAVLQFYKV 286
QLEDGRTLADYNIQKESTLHLVLRLRGGA KLAVLQFYKV
Sbjct: 126 QLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKV 185
Query: 285 DDSGKVQKLRKECPNQECGAGTFMANHFDRHYCGKCGLTYVYQKA 151
DDSGKVQ+LRKECPN ECGAGTFMANHFDRHYCGKCGLTYVYQKA
Sbjct: 186 DDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 230
>ref|XP_002297752.1| predicted protein [Populus trichocarpa]
gi|224064701|ref|XP_002301539.1| predicted protein
[Populus trichocarpa] gi|224114615|ref|XP_002332324.1|
predicted protein [Populus trichocarpa]
gi|224136388|ref|XP_002322317.1| predicted protein
[Populus trichocarpa] gi|255548313|ref|XP_002515213.1|
ubiquitin, putative [Ricinus communis]
gi|1771780|emb|CAA71132.1| ubiquitin extension protein
[Solanum tuberosum] gi|76573361|gb|ABA46785.1| ubiquitin
extension protein-like protein [Solanum tuberosum]
gi|118481233|gb|ABK92566.1| unknown [Populus
trichocarpa] gi|118484030|gb|ABK93901.1| unknown
[Populus trichocarpa] gi|118484734|gb|ABK94236.1|
unknown [Populus trichocarpa]
gi|118484740|gb|ABK94239.1| unknown [Populus
trichocarpa] gi|118484834|gb|ABK94284.1| unknown
[Populus trichocarpa] gi|196166892|gb|ACG70965.1|
ubiquitin extensive-like protein [Ziziphus jujuba]
gi|222832571|gb|EEE71048.1| predicted protein [Populus
trichocarpa] gi|222843265|gb|EEE80812.1| predicted
protein [Populus trichocarpa]
gi|222845010|gb|EEE82557.1| predicted protein [Populus
trichocarpa] gi|222869313|gb|EEF06444.1| predicted
protein [Populus trichocarpa]
gi|223545693|gb|EEF47197.1| ubiquitin, putative [Ricinus
communis]
Length = 156
Score = 263 bits (672), Expect = 3e-68
Identities = 133/156 (85%), Positives = 134/156 (85%)
Frame = -3
Query: 609 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 430
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 429 IQKESTLHLVLRLRGGAXXXXXXXXXXXXXXXXXXXXXKLAVLQFYKVDDSGKVQKLRKE 250
IQKESTLHLVLRLRGGA KLAVLQFYKVDDSGKVQ+LRKE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120
Query: 249 CPNQECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 142
CPN ECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156