BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002115
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containi...   167   1e-39
emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]   167   1e-39
ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containi...   153   1e-35
emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]   153   1e-35
ref|XP_002514151.1| pentatricopeptide repeat-containing protein,...   148   4e-34

>ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
           [Vitis vinifera]
          Length = 593

 Score =  167 bits (422), Expect = 1e-39
 Identities = 75/127 (59%), Positives = 96/127 (75%)
 Frame = -2

Query: 383 DLLSLCKEGKVKEAVEILGNGYNADFNVFYELLNVCGNPKYLDEGKKVHSLLFKSQMRGD 204
           DL++LC+EGKVKEAVE++  G  AD   FY L N CG+PK L+E KKVH    +S  R D
Sbjct: 223 DLMNLCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSD 282

Query: 203 LVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLGDDGLHLFEEMRK 24
           L L N ++EMYG C SM +A++VF+ M +RD+DSWH M+NGYA N +GDDGL L+E+MRK
Sbjct: 283 LQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYANNAMGDDGLQLYEQMRK 342

Query: 23  LGLKPNE 3
           LGL+PNE
Sbjct: 343 LGLEPNE 349


>emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
          Length = 627

 Score =  167 bits (422), Expect = 1e-39
 Identities = 75/127 (59%), Positives = 96/127 (75%)
 Frame = -2

Query: 383 DLLSLCKEGKVKEAVEILGNGYNADFNVFYELLNVCGNPKYLDEGKKVHSLLFKSQMRGD 204
           DL++LC+EGKVKEAVE++  G  AD   FY L N CG+PK L+E KKVH    +S  R D
Sbjct: 257 DLMNLCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSD 316

Query: 203 LVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLGDDGLHLFEEMRK 24
           L L N ++EMYG C SM +A++VF+ M +RD+DSWH M+NGYA N +GDDGL L+E+MRK
Sbjct: 317 LQLNNKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMGDDGLQLYEQMRK 376

Query: 23  LGLKPNE 3
           LGL+PNE
Sbjct: 377 LGLEPNE 383


>ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15690-like [Vitis vinifera]
          Length = 476

 Score =  153 bits (387), Expect = 1e-35
 Identities = 70/125 (56%), Positives = 96/125 (76%)
 Frame = -2

Query: 383 DLLSLCKEGKVKEAVEILGNGYNADFNVFYELLNVCGNPKYLDEGKKVHSLLFKSQMRGD 204
           DL+ LC+EGK++EAVE +G G  A++ VF  +L+ CG  K L+ G++VH LL +S+  GD
Sbjct: 106 DLMGLCEEGKIREAVEYMGQGVCAEYGVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGD 165

Query: 203 LVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLGDDGLHLFEEMRK 24
           + L N LIEMYG+C SM +A++VF+RM +R++ SWH M+NGYAANG G DGL LFE MRK
Sbjct: 166 VELNNKLIEMYGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQGRDGLLLFERMRK 225

Query: 23  LGLKP 9
           +GL+P
Sbjct: 226 VGLRP 230


>emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]
          Length = 497

 Score =  153 bits (387), Expect = 1e-35
 Identities = 70/125 (56%), Positives = 96/125 (76%)
 Frame = -2

Query: 383 DLLSLCKEGKVKEAVEILGNGYNADFNVFYELLNVCGNPKYLDEGKKVHSLLFKSQMRGD 204
           DL+ LC+EGK++EAVE +G G  A++ VF  +L+ CG  K L+ G++VH LL +S+  GD
Sbjct: 108 DLMGLCEEGKIREAVEYMGQGVCAEYGVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGD 167

Query: 203 LVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLGDDGLHLFEEMRK 24
           + L N LIEMYG+C SM +A++VF+RM +R++ SWH M+NGYAANG G DGL LFE MRK
Sbjct: 168 VELNNKLIEMYGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQGRDGLLLFERMRK 227

Query: 23  LGLKP 9
           +GL+P
Sbjct: 228 VGLRP 232


>ref|XP_002514151.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546607|gb|EEF48105.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 388

 Score =  148 bits (374), Expect = 4e-34
 Identities = 69/127 (54%), Positives = 97/127 (76%)
 Frame = -2

Query: 383 DLLSLCKEGKVKEAVEILGNGYNADFNVFYELLNVCGNPKYLDEGKKVHSLLFKSQMRGD 204
           DL+SLC EGKV+EA+E +G G +AD +VF  LL+ CG+ K LD GK+VH  L +S    D
Sbjct: 93  DLMSLCDEGKVEEALECMGQGASADCSVFGALLDCCGSLKLLDMGKRVHEFLRRSTFADD 152

Query: 203 LVLLNNLIEMYGKCESMNEAKQVFERMLDRDLDSWHAMMNGYAANGLGDDGLHLFEEMRK 24
           + + N LIEMYG C S+ +A++VF++M +R++ SWH +++GYAANG GDDGL LFEEM++
Sbjct: 153 IEMNNKLIEMYGNCGSVRDARRVFDKMRERNMRSWHLLISGYAANGQGDDGLLLFEEMKE 212

Query: 23  LGLKPNE 3
            GL+P+E
Sbjct: 213 SGLRPDE 219