BLASTX nr result
ID: Coptis25_contig00002094
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00002094
(707 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002525660.1| Pre-mRNA-splicing factor ini1 [Ricinus commu... 224 2e-61
ref|XP_002299988.1| predicted protein [Populus trichocarpa] gi|2... 221 1e-60
ref|NP_563782.1| PHF5-like protein [Arabidopsis thaliana] gi|184... 221 2e-60
ref|NP_001054163.1| Os04g0663300 [Oryza sativa Japonica Group] g... 220 3e-60
ref|NP_001152699.1| PHD finger-like domain-containing protein 5A... 220 3e-60
>ref|XP_002525660.1| Pre-mRNA-splicing factor ini1 [Ricinus communis]
gi|223535096|gb|EEF36778.1| Pre-mRNA-splicing factor
ini1 [Ricinus communis]
Length = 110
Score = 224 bits (571), Expect(2) = 2e-61
Identities = 101/101 (100%), Positives = 101/101 (100%)
Frame = +3
Query: 219 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 398
MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA
Sbjct: 10 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 69
Query: 399 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 521
YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 70 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
Score = 38.1 bits (87), Expect(2) = 2e-61
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 106 MAKHHPDLIMCRKQP 150
MAKHHPDLIMCRKQP
Sbjct: 1 MAKHHPDLIMCRKQP 15
>ref|XP_002299988.1| predicted protein [Populus trichocarpa] gi|222847246|gb|EEE84793.1|
predicted protein [Populus trichocarpa]
Length = 110
Score = 221 bits (564), Expect(2) = 1e-60
Identities = 100/101 (99%), Positives = 100/101 (99%)
Frame = +3
Query: 219 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 398
MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA
Sbjct: 10 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 69
Query: 399 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 521
YYCKECTQ EKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 70 YYCKECTQLEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
Score = 38.1 bits (87), Expect(2) = 1e-60
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 106 MAKHHPDLIMCRKQP 150
MAKHHPDLIMCRKQP
Sbjct: 1 MAKHHPDLIMCRKQP 15
>ref|NP_563782.1| PHF5-like protein [Arabidopsis thaliana]
gi|18402218|ref|NP_565691.1| PHD finger-like
domain-containing protein 5A [Arabidopsis thaliana]
gi|145323768|ref|NP_001077473.1| PHF5-like protein
[Arabidopsis thaliana] gi|334182358|ref|NP_001184928.1|
PHF5-like protein [Arabidopsis thaliana]
gi|297826397|ref|XP_002881081.1| hypothetical protein
ARALYDRAFT_901975 [Arabidopsis lyrata subsp. lyrata]
gi|122223686|sp|Q0WMV8.1|PHF5B_ARATH RecName: Full=PHD
finger-like domain-containing protein 5B
gi|387935355|sp|P0DI19.1|PHF5A_ARATH RecName: Full=PHD
finger-like domain-containing protein 5A
gi|3420051|gb|AAC31852.1| expressed protein [Arabidopsis
thaliana] gi|21593073|gb|AAM65022.1| unknown
[Arabidopsis thaliana] gi|21618034|gb|AAM67084.1|
unknown [Arabidopsis thaliana]
gi|26451992|dbj|BAC43086.1| unknown protein [Arabidopsis
thaliana] gi|28416819|gb|AAO42940.1| At2g30000
[Arabidopsis thaliana] gi|30793845|gb|AAP40375.1|
unknown protein [Arabidopsis thaliana]
gi|30794025|gb|AAP40459.1| unknown protein [Arabidopsis
thaliana] gi|110739257|dbj|BAF01542.1| hypothetical
protein [Arabidopsis thaliana]
gi|297326920|gb|EFH57340.1| hypothetical protein
ARALYDRAFT_901975 [Arabidopsis lyrata subsp. lyrata]
gi|330253240|gb|AEC08334.1| PHD finger-like
domain-containing protein 5A [Arabidopsis thaliana]
gi|332189964|gb|AEE28085.1| PHF5-like protein
[Arabidopsis thaliana] gi|332189965|gb|AEE28086.1|
PHF5-like protein [Arabidopsis thaliana]
gi|332189966|gb|AEE28087.1| PHF5-like protein
[Arabidopsis thaliana]
Length = 110
Score = 221 bits (562), Expect(2) = 2e-60
Identities = 100/101 (99%), Positives = 100/101 (99%)
Frame = +3
Query: 219 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 398
MCRKQPGIAIGRLCEK DGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA
Sbjct: 10 MCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 69
Query: 399 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 521
YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 70 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
Score = 38.1 bits (87), Expect(2) = 2e-60
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 106 MAKHHPDLIMCRKQP 150
MAKHHPDLIMCRKQP
Sbjct: 1 MAKHHPDLIMCRKQP 15
>ref|NP_001054163.1| Os04g0663300 [Oryza sativa Japonica Group]
gi|115463469|ref|NP_001055334.1| Os05g0367000 [Oryza
sativa Japonica Group] gi|351720989|ref|NP_001235659.1|
uncharacterized protein LOC100305969 [Glycine max]
gi|224059768|ref|XP_002299987.1| predicted protein
[Populus trichocarpa] gi|224103931|ref|XP_002313249.1|
predicted protein [Populus trichocarpa]
gi|242047572|ref|XP_002461532.1| hypothetical protein
SORBIDRAFT_02g004290 [Sorghum bicolor]
gi|242077540|ref|XP_002448706.1| hypothetical protein
SORBIDRAFT_06g031860 [Sorghum bicolor]
gi|255582664|ref|XP_002532111.1| Pre-mRNA-splicing
factor ini1 [Ricinus communis]
gi|356566078|ref|XP_003551262.1| PREDICTED:
uncharacterized protein At1g07170/At2g30000-like isoform
1 [Glycine max] gi|356566080|ref|XP_003551263.1|
PREDICTED: uncharacterized protein
At1g07170/At2g30000-like isoform 2 [Glycine max]
gi|356566082|ref|XP_003551264.1| PREDICTED:
uncharacterized protein At1g07170/At2g30000-like isoform
3 [Glycine max] gi|357123892|ref|XP_003563641.1|
PREDICTED: uncharacterized protein
At1g07170/At2g30000-like [Brachypodium distachyon]
gi|357166580|ref|XP_003580757.1| PREDICTED:
uncharacterized protein At1g07170/At2g30000-like
[Brachypodium distachyon]
gi|449455024|ref|XP_004145253.1| PREDICTED: PHD
finger-like domain-containing protein 5B-like [Cucumis
sativus] gi|449475086|ref|XP_004154370.1| PREDICTED: PHD
finger-like domain-containing protein 5B-like [Cucumis
sativus] gi|449525868|ref|XP_004169938.1| PREDICTED: PHD
finger-like domain-containing protein 5B-like [Cucumis
sativus] gi|38346076|emb|CAE04844.2| OSJNBa0084K01.16
[Oryza sativa Japonica Group] gi|47777378|gb|AAT38012.1|
unknown protein [Oryza sativa Japonica Group]
gi|113565734|dbj|BAF16077.1| Os04g0663300 [Oryza sativa
Japonica Group] gi|113578885|dbj|BAF17248.1|
Os05g0367000 [Oryza sativa Japonica Group]
gi|116309854|emb|CAH66889.1| OSIGBa0099L20.4 [Oryza
sativa Indica Group] gi|118482169|gb|ABK93014.1| unknown
[Populus trichocarpa] gi|118484477|gb|ABK94114.1|
unknown [Populus trichocarpa]
gi|125550107|gb|EAY95929.1| hypothetical protein
OsI_17797 [Oryza sativa Indica Group]
gi|125552053|gb|EAY97762.1| hypothetical protein
OsI_19674 [Oryza sativa Indica Group]
gi|125591958|gb|EAZ32308.1| hypothetical protein
OsJ_16517 [Oryza sativa Japonica Group]
gi|147789122|emb|CAN64656.1| hypothetical protein
VITISV_003384 [Vitis vinifera]
gi|215737191|dbj|BAG96120.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768987|dbj|BAH01216.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|222631322|gb|EEE63454.1| hypothetical protein
OsJ_18267 [Oryza sativa Japonica Group]
gi|222847245|gb|EEE84792.1| predicted protein [Populus
trichocarpa] gi|222849657|gb|EEE87204.1| predicted
protein [Populus trichocarpa]
gi|223528214|gb|EEF30273.1| Pre-mRNA-splicing factor
ini1 [Ricinus communis] gi|241924909|gb|EER98053.1|
hypothetical protein SORBIDRAFT_02g004290 [Sorghum
bicolor] gi|241939889|gb|EES13034.1| hypothetical
protein SORBIDRAFT_06g031860 [Sorghum bicolor]
gi|255627145|gb|ACU13917.1| unknown [Glycine max]
gi|326530700|dbj|BAK01148.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|388514489|gb|AFK45306.1|
unknown [Lotus japonicus]
Length = 110
Score = 220 bits (561), Expect(2) = 3e-60
Identities = 99/101 (98%), Positives = 100/101 (99%)
Frame = +3
Query: 219 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 398
MCRKQPGIAIGRLCEK DGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDA
Sbjct: 10 MCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDA 69
Query: 399 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 521
YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 70 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
Score = 38.1 bits (87), Expect(2) = 3e-60
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 106 MAKHHPDLIMCRKQP 150
MAKHHPDLIMCRKQP
Sbjct: 1 MAKHHPDLIMCRKQP 15
>ref|NP_001152699.1| PHD finger-like domain-containing protein 5A [Zea mays]
gi|226499812|ref|NP_001148557.1| PHD finger-like
domain-containing protein 5A [Zea mays]
gi|195620406|gb|ACG32033.1| PHD finger-like
domain-containing protein 5A [Zea mays]
gi|195636738|gb|ACG37837.1| PHD finger-like
domain-containing protein 5A [Zea mays]
gi|195659129|gb|ACG49032.1| PHD finger-like
domain-containing protein 5A [Zea mays]
gi|223946749|gb|ACN27458.1| unknown [Zea mays]
gi|414584947|tpg|DAA35518.1| TPA: PHD finger-like
domain-containing protein 5A isoform 1 [Zea mays]
gi|414584948|tpg|DAA35519.1| TPA: PHD finger-like
domain-containing protein 5A isoform 2 [Zea mays]
gi|414584949|tpg|DAA35520.1| TPA: PHD finger-like
domain-containing protein 5A isoform 3 [Zea mays]
Length = 110
Score = 220 bits (560), Expect(2) = 3e-60
Identities = 98/101 (97%), Positives = 100/101 (99%)
Frame = +3
Query: 219 MCRKQPGIAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDA 398
MCRKQPGIAIGRLCEK DGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDA
Sbjct: 10 MCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDA 69
Query: 399 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 521
YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 70 YYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
Score = 38.1 bits (87), Expect(2) = 3e-60
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 106 MAKHHPDLIMCRKQP 150
MAKHHPDLIMCRKQP
Sbjct: 1 MAKHHPDLIMCRKQP 15