BLASTX nr result

ID: Coptis25_contig00002068 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002068
         (1224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27895.3| unnamed protein product [Vitis vinifera]              145   2e-32
ref|XP_003569232.1| PREDICTED: zinc finger CCCH domain-containin...   136   9e-30
sp|Q657B3.1|C3H7_ORYSJ RecName: Full=Zinc finger CCCH domain-con...   131   4e-28
gb|EEE54840.1| hypothetical protein OsJ_02295 [Oryza sativa Japo...   131   4e-28
gb|EEC70929.1| hypothetical protein OsI_02512 [Oryza sativa Indi...   130   5e-28

>emb|CBI27895.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  145 bits (367), Expect = 2e-32
 Identities = 101/303 (33%), Positives = 143/303 (47%), Gaps = 21/303 (6%)
 Frame = -3

Query: 1066 AEQDKMSGVKRLKLHTISKPIQVKYCKHYLKGSCHQGDSCKYSHDI----KKPEFCKYFL 899
            AE++K  GVKRL+L  +SKP  V YC+HYLKG CH+GD C++SHD     K    C +  
Sbjct: 209  AEKNKELGVKRLRLLPVSKPKTVTYCRHYLKGRCHEGDHCRFSHDTIPLTKSSPCCHFAR 268

Query: 898  NNCLKGADCPYDHDPSKYPCHKYQSEGFCVRGAACQFSHKVPLXXXXXXXXXAKQKAELQ 719
              C+KG DCP+DH  S YPC+ Y S+GFC RG  C FSHK+PL           +     
Sbjct: 269  GTCMKGDDCPFDHQLSNYPCNNYVSKGFCSRGDDCLFSHKMPLKESSPTAVNVCKPVSEP 328

Query: 718  GSAILGRQPNKGSTSKESLNMSKNMTRDTPA-SFGTIRHQGQN----TVDLKPPAQAPKG 554
             S      P+K  + K  +N + +   ++ + S G             + LKPP QA +G
Sbjct: 329  PSL-----PSKSYSKKLDMNGTSHQNGNSLSHSVGIFPQSNMEKKVAEIVLKPPEQASRG 383

Query: 553  ISFLMFGN---DSSKQPDGQCQSPPVGDDVASTCFKNQGVSERLYSSNKTS-----GRMS 398
            I+ L FG    D S +      SP + + V     KNQG  + +    K +      R  
Sbjct: 384  INSLSFGKSPMDYSGKLKQIGSSPTMDEGVEVDKQKNQGEVQNMNEKAKRTPVTVPPRGI 443

Query: 397  SILPVGQSSSMISDGKDKNLHSSAQKAQPSTSY----ESKKNDQSAPSTASNGNIPTISS 230
            + L  G++   ++D   K L  S    +         +S K  Q   S+A +GNI   S 
Sbjct: 444  NFLSFGKAP--LNDSSVKELAGSPSNREDGNKILPLGDSNKYKQVGSSSARDGNINVSSQ 501

Query: 229  ILQ 221
            + Q
Sbjct: 502  LNQ 504


>ref|XP_003569232.1| PREDICTED: zinc finger CCCH domain-containing protein 7-like
            [Brachypodium distachyon]
          Length = 685

 Score =  136 bits (343), Expect = 9e-30
 Identities = 101/301 (33%), Positives = 134/301 (44%), Gaps = 15/301 (4%)
 Frame = -3

Query: 1066 AEQDKMSGVKRLKLHTISKPIQVKYCKHYLKGSCHQGDSCKYSHD---IKKPEFCKYFLN 896
            A Q +  GVKRLKL  I KP  V+YC  YL G C QG+ CK+SHD   + K + C +F  
Sbjct: 408  ALQREADGVKRLKLAPIIKPKVVRYCHFYLHGKCQQGNVCKFSHDTTPLTKSKPCTHFAR 467

Query: 895  -NCLKGADCPYDHDPSKYPCHKYQSEGFCVRGAACQFSHKVPLXXXXXXXXXAKQKAELQ 719
             +CLKG DCPYDH+ SKYPCH +   G C+RG  C+FSH  P           K  A L 
Sbjct: 468  GSCLKGDDCPYDHELSKYPCHNFLGNGMCLRGDKCKFSHVAPTADDSSTKDAKKSDASLV 527

Query: 718  GSAILGRQPN---KGSTSKESLNMSKNMTR--DTPASFGTIRHQGQNTVDLKPPAQAPKG 554
               +  ++ N   K ST  +   ++   T+      + G+I    Q     K  A  PKG
Sbjct: 528  SEKLTSKEQNSSQKISTVHDGEPVASAPTKHYSILKTLGSISKNAQ-----KASAHMPKG 582

Query: 553  ISFLMFGNDSSKQPDGQCQSPPVGDDVASTCFKNQGVSERLYSSNKTSGRMSSILPVGQS 374
            + FL F    S        +PP G+ V     +           N    R  S     ++
Sbjct: 583  VQFLAFSKGRSDSSILHQDAPPPGNFVGPQAAEG--------DKNAQPNRHRSAARSNEN 634

Query: 373  SSMISDGKDKNLHSSAQKAQPSTSYESKKNDQSAPSTASNGNIPT------ISSILQDFL 212
            SS     K+ + H  +         E KK   SA S A  G++ T       S ILQ+FL
Sbjct: 635  SS-----KEASSHPIS---------EQKKTSLSADSIAVLGSVSTQHEVSEASRILQEFL 680

Query: 211  F 209
            F
Sbjct: 681  F 681


>sp|Q657B3.1|C3H7_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 7;
            Short=OsC3H7 gi|52076312|dbj|BAD45097.1| zinc finger
            (CCCH-type) protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  131 bits (329), Expect = 4e-28
 Identities = 104/312 (33%), Positives = 144/312 (46%), Gaps = 26/312 (8%)
 Frame = -3

Query: 1066 AEQDKMSGVKRLKLHTISKPIQVKYCKHYLKGSCHQGDSCKYSHD---IKKPEFCKYFLN 896
            A Q +  GVKRLKL  + KP  VK C  YL G C QG+ CK+SHD   + K + C ++  
Sbjct: 410  ALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYAR 469

Query: 895  -NCLKGADCPYDHDPSKYPCHKYQSEGFCVRGAACQFSHKVPLXXXXXXXXXAKQKAELQ 719
             +CLKG DCPYDH+ SKYPCH +   G C+RG  C+FSH +P           K  A   
Sbjct: 470  GSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAEGPSTPDAKKSNA--- 526

Query: 718  GSAILGRQPNKGSTSKE-SLNMSKNMTRDTPASFGTIRHQG--QNTVDL-----KPPAQA 563
                    P K +  ++ S   +  +    PA+   I+H    +N   +     K P + 
Sbjct: 527  -----SSVPEKANCQEQTSRQKTSTVYSGEPATSVPIKHHSILKNLAGISGNAQKVPVRI 581

Query: 562  PKGISFLMFGNDSSKQPDGQCQSPPVGDDVAST-CFKN------QGVSERLYSSNKTSGR 404
            P+GI FL F   +  +PD    S  +  DV ST   KN      Q       +  K  G+
Sbjct: 582  PRGIQFLPF---NKARPD----SSILHQDVVSTEKHKNPTGGPHQNFGRPQPADGKKLGK 634

Query: 403  MSSILPVGQSSSMISDGKDKNLHSSAQKAQPSTSYESKKNDQSAPSTA-------SNGNI 245
             +     G  S+ + D KD     S+++A      E KKN  S P+TA       +   +
Sbjct: 635  HN-----GHRSAPLLDEKD-----SSKQANLHPCSEPKKN--SLPTTAAVPSSVSTQHEV 682

Query: 244  PTISSILQDFLF 209
               S ILQ+FLF
Sbjct: 683  SEASRILQEFLF 694


>gb|EEE54840.1| hypothetical protein OsJ_02295 [Oryza sativa Japonica Group]
          Length = 698

 Score =  131 bits (329), Expect = 4e-28
 Identities = 104/312 (33%), Positives = 144/312 (46%), Gaps = 26/312 (8%)
 Frame = -3

Query: 1066 AEQDKMSGVKRLKLHTISKPIQVKYCKHYLKGSCHQGDSCKYSHD---IKKPEFCKYFLN 896
            A Q +  GVKRLKL  + KP  VK C  YL G C QG+ CK+SHD   + K + C ++  
Sbjct: 410  ALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYAR 469

Query: 895  -NCLKGADCPYDHDPSKYPCHKYQSEGFCVRGAACQFSHKVPLXXXXXXXXXAKQKAELQ 719
             +CLKG DCPYDH+ SKYPCH +   G C+RG  C+FSH +P           K  A   
Sbjct: 470  GSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAEGPSTPDAKKSNA--- 526

Query: 718  GSAILGRQPNKGSTSKE-SLNMSKNMTRDTPASFGTIRHQG--QNTVDL-----KPPAQA 563
                    P K +  ++ S   +  +    PA+   I+H    +N   +     K P + 
Sbjct: 527  -----SSVPEKANCQEQTSRQKTSTVYSGEPATSVPIKHHSILKNLAGISGNAQKVPVRI 581

Query: 562  PKGISFLMFGNDSSKQPDGQCQSPPVGDDVAST-CFKN------QGVSERLYSSNKTSGR 404
            P+GI FL F   +  +PD    S  +  DV ST   KN      Q       +  K  G+
Sbjct: 582  PRGIQFLPF---NKARPD----SSILHQDVVSTEKHKNPTGGPHQNFGRPQPADGKKLGK 634

Query: 403  MSSILPVGQSSSMISDGKDKNLHSSAQKAQPSTSYESKKNDQSAPSTA-------SNGNI 245
             +     G  S+ + D KD     S+++A      E KKN  S P+TA       +   +
Sbjct: 635  HN-----GHRSAPLLDEKD-----SSKQANLHPCSEPKKN--SLPTTAAVPSSVSTQHEV 682

Query: 244  PTISSILQDFLF 209
               S ILQ+FLF
Sbjct: 683  SEASRILQEFLF 694


>gb|EEC70929.1| hypothetical protein OsI_02512 [Oryza sativa Indica Group]
          Length = 698

 Score =  130 bits (328), Expect = 5e-28
 Identities = 104/312 (33%), Positives = 144/312 (46%), Gaps = 26/312 (8%)
 Frame = -3

Query: 1066 AEQDKMSGVKRLKLHTISKPIQVKYCKHYLKGSCHQGDSCKYSHD---IKKPEFCKYFLN 896
            A Q +  GVKRLKL  + KP  VK C  YL G C QG+ CK+SHD   + K + C ++  
Sbjct: 410  ALQREAEGVKRLKLQPVIKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYAR 469

Query: 895  -NCLKGADCPYDHDPSKYPCHKYQSEGFCVRGAACQFSHKVPLXXXXXXXXXAKQKAELQ 719
             +CLKG DCPYDH+ SKYPCH +   G C+RG  C+FSH +P           K  A   
Sbjct: 470  GSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAEGPSTPDAKKSNA--- 526

Query: 718  GSAILGRQPNKGSTSKE-SLNMSKNMTRDTPASFGTIRHQG--QNTVDL-----KPPAQA 563
                    P K +  ++ S   +  +    PA+   I+H    +N   +     K P + 
Sbjct: 527  -----SSVPEKANCQEQTSRQKTSTVYSGEPATSVPIKHHSILKNLAGISGNAQKVPIRI 581

Query: 562  PKGISFLMFGNDSSKQPDGQCQSPPVGDDVAST-CFKN------QGVSERLYSSNKTSGR 404
            P+GI FL F   +  +PD    S  +  DV ST   KN      Q       +  K  G+
Sbjct: 582  PRGIQFLPF---NKARPD----SSILHQDVVSTEKHKNPTGGPHQNFGRPQPADGKKLGK 634

Query: 403  MSSILPVGQSSSMISDGKDKNLHSSAQKAQPSTSYESKKNDQSAPSTA-------SNGNI 245
             +     G  S+ + D KD     S+++A      E KKN  S P+TA       +   +
Sbjct: 635  HN-----GHRSAPLLDEKD-----SSKQANLHPCSEPKKN--SLPTTAAVPSSVSTQHEV 682

Query: 244  PTISSILQDFLF 209
               S ILQ+FLF
Sbjct: 683  SEASRILQEFLF 694


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