BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002050
         (1340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           296   e-152
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         291   e-146
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            281   e-145
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   284   e-145
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      281   e-136

>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  296 bits (759), Expect(4) = e-152
 Identities = 146/215 (67%), Positives = 170/215 (79%)
 Frame = -2

Query: 1249 KNHTYELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKGIDFDEIFSPV 1070
            +N T+ELV+ P+G++ LKNKW++K+KH+E+N   R KARLVVKGF QRKGIDFDEIFSPV
Sbjct: 840  ENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPV 899

Query: 1069 VKMTSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIK 890
            VKMTSIR VLG+ AS+NLE+EQ+DVKT FLHGDLEE++YM+QP+GF+ KGKE  VC+L K
Sbjct: 900  VKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRK 959

Query: 889  RLYGLKQAPRQWYIKFGSFMAKQEYKKPASDHCVFLQRFPDRDFIVLLLYVDDMLIVGPX 710
             LYGLKQAPRQWY KF S M +  YKK  SDHCVF Q+F D DFI+LLLYVDDMLIVG  
Sbjct: 960  SLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRN 1019

Query: 709  XXXXXXXXXXXXKSFEMKDLGQAKQILGMRITRDR 605
                        K F MKDLG AKQILGMRI RDR
Sbjct: 1020 VSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDR 1054



 Score =  234 bits (597), Expect(4) = e-152
 Identities = 113/155 (72%), Positives = 126/155 (81%)
 Frame = -1

Query: 485  KMCPKGEHKQSQMEKILYASAVDSLMYAMVCTRPDIAFAVGVVSRFLSNPRKEHWKGVKW 306
            K  P  + ++ +ME+I YASAV SLMYAMVCTRPDIA AVGVVSRFLSNP KEHW  VKW
Sbjct: 1095 KQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKW 1154

Query: 305  ILRYLKGTSKSCLCFSGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFARGAISWQSKL*K 126
            ILRYL+GTSK CLCF    P+L GYTDADMAGDVDS KSTSGYL+ F+ GA+SWQSKL K
Sbjct: 1155 ILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQK 1214

Query: 125  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQ 21
            CVALSTTEAE+I  TE CKEL+WMK+F  ELG  Q
Sbjct: 1215 CVALSTTEAEFIAATEACKELIWMKKFLTELGFSQ 1249



 Score = 43.1 bits (100), Expect(4) = e-152
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = -3

Query: 579  KKNYIEKVLKKFNMDQAKPVSCPLGGQFRMT 487
            ++ YIEKVL++FNM++ K VSCPL   FR++
Sbjct: 1063 QEKYIEKVLQRFNMEKTKAVSCPLANHFRLS 1093



 Score = 37.4 bits (85), Expect(4) = e-152
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = -3

Query: 1338 SDGGEPMYYQKALEGTDKEKWLKVMHDEMQRI 1243
            +DGGEP  +++A++   KEKW++ M DE++ +
Sbjct: 807  TDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSL 838


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  291 bits (746), Expect(4) = e-146
 Identities = 142/214 (66%), Positives = 169/214 (78%)
 Frame = -2

Query: 1246 NHTYELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKGIDFDEIFSPVV 1067
            N T+ELV+ P+ RK LKN+W+Y+VKHEE     R KARLVVKGF Q+KGIDFDEIFSPVV
Sbjct: 838  NDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVV 897

Query: 1066 KMTSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKR 887
            K +SIRVVLG+ A +++EIEQ+DVKT FLHGDL+E++YM+QPEGF+VKGKE  VC+L K 
Sbjct: 898  KFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKS 957

Query: 886  LYGLKQAPRQWYIKFGSFMAKQEYKKPASDHCVFLQRFPDRDFIVLLLYVDDMLIVGPXX 707
            LYGLKQAPRQWY KF S M+K  YKK +SDHCVF+ R+ D DF++LLLYVDDMLIVG   
Sbjct: 958  LYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNA 1017

Query: 706  XXXXXXXXXXXKSFEMKDLGQAKQILGMRITRDR 605
                       KSF MKD+G AKQILGM+I RDR
Sbjct: 1018 SRIQELKQELSKSFSMKDMGPAKQILGMKIIRDR 1051



 Score =  223 bits (567), Expect(4) = e-146
 Identities = 104/155 (67%), Positives = 124/155 (80%)
 Frame = -1

Query: 485  KMCPKGEHKQSQMEKILYASAVDSLMYAMVCTRPDIAFAVGVVSRFLSNPRKEHWKGVKW 306
            K CP  E ++ +M+++ Y+SAV SLMYAMVCTRPDIA AVGVVSRFLSNP +EHW  VKW
Sbjct: 1092 KQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKW 1151

Query: 305  ILRYLKGTSKSCLCFSGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFARGAISWQSKL*K 126
            ILRYL+GTS   LCF   KP+L GYTD+DMAGD+D+ KSTSGYL+T+A GA+SWQS+L K
Sbjct: 1152 ILRYLRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKSTSGYLITYAGGAVSWQSRLQK 1211

Query: 125  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQ 21
            CV LSTTEAE+I   E  KE+LWMK+F  ELG  Q
Sbjct: 1212 CVDLSTTEAEFIASVEASKEMLWMKKFLQELGFVQ 1246



 Score = 40.4 bits (93), Expect(4) = e-146
 Identities = 17/32 (53%), Positives = 26/32 (81%)
 Frame = -3

Query: 579  KKNYIEKVLKKFNMDQAKPVSCPLGGQFRMTK 484
            ++ YIEKVL++F+M++AKPVS PL   F++ K
Sbjct: 1060 QEKYIEKVLERFHMNEAKPVSTPLDMHFKLCK 1091



 Score = 36.6 bits (83), Expect(4) = e-146
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 1338 SDGGEPMYYQKALEGTDKEKWLKVMHDEMQRI 1243
            +DGGEP  Y++A+E   K +W + M +EM  +
Sbjct: 804  TDGGEPESYEEAMESDQKRQWFEAMQEEMNSL 835


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  281 bits (718), Expect(4) = e-145
 Identities = 137/218 (62%), Positives = 170/218 (77%)
 Frame = -2

Query: 1249 KNHTYELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKGIDFDEIFSPV 1070
            KN TY+LV+ P+G+K+LKN+W++K K ++ N  ++ KARLVVKG  Q+KGIDFDEIF+PV
Sbjct: 200  KNETYDLVKPPKGKKVLKNRWLFKNK-KDGNKLVKRKARLVVKGCHQKKGIDFDEIFAPV 258

Query: 1069 VKMTSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIK 890
            VKMTSIR++LG+   +NLE+EQLDVKT FLHGDL E++YM+QPEGFEVKGKE+ VCKL K
Sbjct: 259  VKMTSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKK 318

Query: 889  RLYGLKQAPRQWYIKFGSFMAKQEYKKPASDHCVFLQRFPDRDFIVLLLYVDDMLIVGPX 710
             LYGLKQAPRQWY KF SFM+  EYK+  +D CV+ ++F + +FI+L LYVDDMLIVG  
Sbjct: 319  SLYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQD 378

Query: 709  XXXXXXXXXXXXKSFEMKDLGQAKQILGMRITRDR*GG 596
                        KSF+MKDLG AKQILGM I RDR  G
Sbjct: 379  VEMICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAG 416



 Score =  229 bits (583), Expect(4) = e-145
 Identities = 109/160 (68%), Positives = 127/160 (79%)
 Frame = -1

Query: 485 KMCPKGEHKQSQMEKILYASAVDSLMYAMVCTRPDIAFAVGVVSRFLSNPRKEHWKGVKW 306
           + CP  E ++  M  I Y+S V SLMYAMVCTRPDIA AVG+VSR+L+NP K HW+ VKW
Sbjct: 454 RCCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKW 513

Query: 305 ILRYLKGTSKSCLCFSGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFARGAISWQSKL*K 126
           ILRYL+GTS   LCF G +P+LEG+TDADMAGD+D+ KSTSGYL  FARGAISWQSKL K
Sbjct: 514 ILRYLRGTSNLSLCFGGGEPILEGFTDADMAGDLDNRKSTSGYLFKFARGAISWQSKLQK 573

Query: 125 CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVV 6
           CVALSTTE EYI   E  KE+LW+KRF  ELGLKQ ++VV
Sbjct: 574 CVALSTTEVEYIAAVEASKEMLWLKRFLQELGLKQSEYVV 613



 Score = 44.3 bits (103), Expect(4) = e-145
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = -3

Query: 603 RVGSCGFLKKNYIEKVLKKFNMDQAKPVSCPLGGQFRMTK 484
           + G     ++NYIE+VL++FNM  AKPV+ PL   F+++K
Sbjct: 414 KAGKLWLSQENYIERVLERFNMKNAKPVNTPLAAHFKLSK 453



 Score = 33.1 bits (74), Expect(4) = e-145
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 1338 SDGGEPMYYQKALEGTDKEKWLKVMHDEMQRI 1243
            +D GEP   Q+ L  +DK+ WLK M ++M  +
Sbjct: 167  TDEGEPESLQEVLSHSDKDHWLKAMQEDMDSL 198


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  284 bits (726), Expect(3) = e-145
 Identities = 139/215 (64%), Positives = 171/215 (79%)
 Frame = -2

Query: 1249 KNHTYELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKGIDFDEIFSPV 1070
            KN TY+LVE P+G++ LK KW++K+K + +   +R+KARLVVKGF Q+KGIDFDEIFSPV
Sbjct: 839  KNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPV 898

Query: 1069 VKMTSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIK 890
            VKMTSIR +L + AS++LE+EQLDVKT FLHGDLEE++YM+QPEGFEV GK+H+VCKL K
Sbjct: 899  VKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNK 958

Query: 889  RLYGLKQAPRQWYIKFGSFMAKQEYKKPASDHCVFLQRFPDRDFIVLLLYVDDMLIVGPX 710
             LYGLKQAPRQWY+KF SFM  Q Y K  SD CV+ +RF + +FI+LLLYVDDMLIVG  
Sbjct: 959  SLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKD 1018

Query: 709  XXXXXXXXXXXXKSFEMKDLGQAKQILGMRITRDR 605
                        KSF+MKDLG A+QILGM+I R+R
Sbjct: 1019 KGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053



 Score =  238 bits (608), Expect(3) = e-145
 Identities = 113/160 (70%), Positives = 132/160 (82%)
 Frame = -1

Query: 485  KMCPKGEHKQSQMEKILYASAVDSLMYAMVCTRPDIAFAVGVVSRFLSNPRKEHWKGVKW 306
            KMCP    ++  M K+ Y+SAV SLMYAMVCTRPDIA AVGVVSRFL NP KEHW+ VKW
Sbjct: 1094 KMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKW 1153

Query: 305  ILRYLKGTSKSCLCFSGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFARGAISWQSKL*K 126
            ILRYL+GT+  CLCF GS P+L+GYTDADMAGD+D+ KS++GYL TF+ GAISWQSKL K
Sbjct: 1154 ILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQK 1213

Query: 125  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVV 6
            CVALSTTEAEYI  TE  KE++W+KRF  ELGL QK++VV
Sbjct: 1214 CVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVV 1253



 Score = 42.0 bits (97), Expect(3) = e-145
 Identities = 17/32 (53%), Positives = 25/32 (78%)
 Frame = -3

Query: 579  KKNYIEKVLKKFNMDQAKPVSCPLGGQFRMTK 484
            ++ YIE+VL++FNM  AKPVS PL G  +++K
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSK 1093


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  281 bits (718), Expect(3) = e-136
 Identities = 136/214 (63%), Positives = 170/214 (79%)
 Frame = -2

Query: 1246 NHTYELVEKPQGRKILKNKWIYKVKHEENNPHLRHKARLVVKGFGQRKGIDFDEIFSPVV 1067
            NHT++LV+ P+ +K L+N+WIY+VK E N+   R+KARLVVKGF QRKGIDF+EIFSPVV
Sbjct: 784  NHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVV 843

Query: 1066 KMTSIRVVLGMTASMNLEIEQLDVKTVFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKR 887
            KM+SIR+VL + A+++LE+EQ+DVKT FLHGDLEE++YM QP+GF V+GKE  VC+L K 
Sbjct: 844  KMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKS 903

Query: 886  LYGLKQAPRQWYIKFGSFMAKQEYKKPASDHCVFLQRFPDRDFIVLLLYVDDMLIVGPXX 707
            LYGLKQAPRQWY KF S M +Q YKK  SDHCVF+++F + DFI+LLLYVDD+LIVG   
Sbjct: 904  LYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDI 963

Query: 706  XXXXXXXXXXXKSFEMKDLGQAKQILGMRITRDR 605
                       +SF MKD+G AKQILG+RI RDR
Sbjct: 964  SMINRLKKQLSESFAMKDMGAAKQILGIRIMRDR 997



 Score =  218 bits (554), Expect(3) = e-136
 Identities = 101/160 (63%), Positives = 126/160 (78%)
 Frame = -1

Query: 485  KMCPKGEHKQSQMEKILYASAVDSLMYAMVCTRPDIAFAVGVVSRFLSNPRKEHWKGVKW 306
            K  P  E+++S M++I YASAV SLMYAMVCTRPDIA  VG VSRF+SNP +EHW  VKW
Sbjct: 1038 KQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKW 1097

Query: 305  ILRYLKGTSKSCLCFSGSKPLLEGYTDADMAGDVDSMKSTSGYLVTFARGAISWQSKL*K 126
            ILRYL+GT+   LCF G KP L GYTD+DM GD+DS +STSGY++ FA GA++WQS+L K
Sbjct: 1098 ILRYLRGTTCLRLCFGGDKPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQK 1157

Query: 125  CVALSTTEAEYIVVTECCKELLWMKRFHDELGLKQKQFVV 6
            CVALSTTEAE+I +TE CKELLW+K+   EL   Q ++++
Sbjct: 1158 CVALSTTEAEFIAITEACKELLWVKKLLQELSFVQDKYLL 1197



 Score = 37.4 bits (85), Expect(3) = e-136
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 1338 SDGGEPMYYQKALEGTDKEKWLKVMHDEMQRI 1243
            +D GEP  Y +A+E  +K+KWL  M DEM+ +
Sbjct: 750  TDEGEPECYLEAMESEEKKKWLDAMQDEMKSL 781