BLASTX nr result
ID: Coptis25_contig00002003
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00002003 (1400 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago trun... 268 1e-91 ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vi... 271 3e-91 ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-lik... 266 2e-90 ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-lik... 267 2e-90 ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|2... 271 2e-90 >ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago truncatula] gi|355504724|gb|AES85927.1| tRNA modification GTPase mnmE [Medicago truncatula] Length = 543 Score = 268 bits (685), Expect(2) = 1e-91 Identities = 137/172 (79%), Positives = 148/172 (86%) Frame = +2 Query: 560 VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739 V+AVPMLAPRSYTREDVVELQCHGN+VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD Sbjct: 142 VIAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRICLEAGATLAQPGEFTLRAFLNGRLD 201 Query: 740 LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919 LSQAEN+ KLI+ GIQGGFS+LV+SLR QCI+LLTEIEARLDF+DEMP Sbjct: 202 LSQAENVGKLIAAKSVAAADAALEGIQGGFSSLVRSLRNQCIDLLTEIEARLDFEDEMPP 261 Query: 920 LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075 LD + +MD IH M DVE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA Sbjct: 262 LDLNGIMDKIHHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 313 Score = 96.7 bits (239), Expect(2) = 1e-91 Identities = 51/73 (69%), Positives = 62/73 (84%) Frame = +1 Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356 LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM VSA++G TS+D +LLERI+ +E T Sbjct: 346 LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKEST 405 Query: 1357 GSSALTILVINKI 1395 GSS ILV+NKI Sbjct: 406 GSSTPVILVVNKI 418 >ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera] gi|302141924|emb|CBI19127.3| unnamed protein product [Vitis vinifera] Length = 571 Score = 271 bits (694), Expect(2) = 3e-91 Identities = 139/172 (80%), Positives = 150/172 (87%) Frame = +2 Query: 560 VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739 VLA+PMLAPRSYTREDVVELQCHG++VCLRRVLRACLE+GARLAEPGEFTLRAFLNGRLD Sbjct: 173 VLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLESGARLAEPGEFTLRAFLNGRLD 232 Query: 740 LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919 LSQAEN+ KLIS GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP Sbjct: 233 LSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPP 292 Query: 920 LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075 LD + +MD IH M DVE ALETANYD+LLQSGLQIAI+GRPNVGKSSLLNA Sbjct: 293 LDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPNVGKSSLLNA 344 Score = 92.0 bits (227), Expect(2) = 3e-91 Identities = 49/73 (67%), Positives = 57/73 (78%) Frame = +1 Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356 LLDTAGI ET+DIVEKIGVERSEA+AI ADVIIM +SA+DG TS D +L RI N++ Sbjct: 377 LLDTAGIRETDDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFV 436 Query: 1357 GSSALTILVINKI 1395 SS ILV+NKI Sbjct: 437 ESSTPVILVVNKI 449 >ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max] Length = 548 Score = 266 bits (680), Expect(2) = 2e-90 Identities = 137/172 (79%), Positives = 147/172 (85%) Frame = +2 Query: 560 VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739 VLAVPMLAPRSYTREDVVELQCHG++VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD Sbjct: 148 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLD 207 Query: 740 LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919 LSQAEN+ +LI+ GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP Sbjct: 208 LSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPP 267 Query: 920 LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075 LD + MD IH M +VE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA Sbjct: 268 LDLNLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 319 Score = 94.7 bits (234), Expect(2) = 2e-90 Identities = 50/73 (68%), Positives = 61/73 (83%) Frame = +1 Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356 LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM VSA++G TS+D +LLERI+ + T Sbjct: 352 LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGST 411 Query: 1357 GSSALTILVINKI 1395 GSS ILV+NKI Sbjct: 412 GSSTPVILVVNKI 424 >ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max] Length = 520 Score = 267 bits (683), Expect(2) = 2e-90 Identities = 137/172 (79%), Positives = 148/172 (86%) Frame = +2 Query: 560 VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739 VLAVPMLAPRSYTREDVVELQCHG++VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD Sbjct: 120 VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLD 179 Query: 740 LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919 LSQAEN+ +LI+ GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP Sbjct: 180 LSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPP 239 Query: 920 LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075 LD + +MD IH M +VE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA Sbjct: 240 LDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 291 Score = 93.6 bits (231), Expect(2) = 2e-90 Identities = 49/73 (67%), Positives = 61/73 (83%) Frame = +1 Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356 LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM +SA++G TS+D +LLERI+ + T Sbjct: 324 LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGST 383 Query: 1357 GSSALTILVINKI 1395 GSS ILV+NKI Sbjct: 384 GSSTPVILVVNKI 396 >ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|222842763|gb|EEE80310.1| predicted protein [Populus trichocarpa] Length = 483 Score = 271 bits (692), Expect(2) = 2e-90 Identities = 140/172 (81%), Positives = 149/172 (86%) Frame = +2 Query: 560 VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739 VLAVPMLAPRSYTREDVVELQCHG +VCLRRVLRAC+EAGARLAEPGEFTLRAFLNGRLD Sbjct: 84 VLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEAGARLAEPGEFTLRAFLNGRLD 143 Query: 740 LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919 LSQAEN+ KLIS GIQGGF++LVKSLR QCIELLTEIEARLDFDDEMP Sbjct: 144 LSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIEARLDFDDEMPP 203 Query: 920 LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075 LD + +MD IH M +VE AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNA Sbjct: 204 LDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQIAIVGRPNVGKSSLLNA 255 Score = 90.1 bits (222), Expect(2) = 2e-90 Identities = 47/73 (64%), Positives = 57/73 (78%) Frame = +1 Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356 LLDTAGI T+D+VEKIGVERSEA+A+GADVI+M VSA+DG T +D ELL RI ++ Sbjct: 288 LLDTAGIRVTDDVVEKIGVERSEAVALGADVIVMTVSALDGWTPEDTELLNRIVSKKKSV 347 Query: 1357 GSSALTILVINKI 1395 GS ILV+NKI Sbjct: 348 GSFTPMILVVNKI 360