BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00002003
         (1400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago trun...   268   1e-91
ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vi...   271   3e-91
ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-lik...   266   2e-90
ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-lik...   267   2e-90
ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|2...   271   2e-90

>ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago truncatula]
            gi|355504724|gb|AES85927.1| tRNA modification GTPase mnmE
            [Medicago truncatula]
          Length = 543

 Score =  268 bits (685), Expect(2) = 1e-91
 Identities = 137/172 (79%), Positives = 148/172 (86%)
 Frame = +2

Query: 560  VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739
            V+AVPMLAPRSYTREDVVELQCHGN+VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD
Sbjct: 142  VIAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRICLEAGATLAQPGEFTLRAFLNGRLD 201

Query: 740  LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919
            LSQAEN+ KLI+            GIQGGFS+LV+SLR QCI+LLTEIEARLDF+DEMP 
Sbjct: 202  LSQAENVGKLIAAKSVAAADAALEGIQGGFSSLVRSLRNQCIDLLTEIEARLDFEDEMPP 261

Query: 920  LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075
            LD + +MD IH M  DVE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA
Sbjct: 262  LDLNGIMDKIHHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 313



 Score = 96.7 bits (239), Expect(2) = 1e-91
 Identities = 51/73 (69%), Positives = 62/73 (84%)
 Frame = +1

Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356
            LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM VSA++G TS+D +LLERI+  +E T
Sbjct: 346  LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKEST 405

Query: 1357 GSSALTILVINKI 1395
            GSS   ILV+NKI
Sbjct: 406  GSSTPVILVVNKI 418


>ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera]
            gi|302141924|emb|CBI19127.3| unnamed protein product
            [Vitis vinifera]
          Length = 571

 Score =  271 bits (694), Expect(2) = 3e-91
 Identities = 139/172 (80%), Positives = 150/172 (87%)
 Frame = +2

Query: 560  VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739
            VLA+PMLAPRSYTREDVVELQCHG++VCLRRVLRACLE+GARLAEPGEFTLRAFLNGRLD
Sbjct: 173  VLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLESGARLAEPGEFTLRAFLNGRLD 232

Query: 740  LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919
            LSQAEN+ KLIS            GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP 
Sbjct: 233  LSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPP 292

Query: 920  LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075
            LD + +MD IH M  DVE ALETANYD+LLQSGLQIAI+GRPNVGKSSLLNA
Sbjct: 293  LDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPNVGKSSLLNA 344



 Score = 92.0 bits (227), Expect(2) = 3e-91
 Identities = 49/73 (67%), Positives = 57/73 (78%)
 Frame = +1

Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356
            LLDTAGI ET+DIVEKIGVERSEA+AI ADVIIM +SA+DG TS D +L  RI  N++  
Sbjct: 377  LLDTAGIRETDDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFV 436

Query: 1357 GSSALTILVINKI 1395
             SS   ILV+NKI
Sbjct: 437  ESSTPVILVVNKI 449


>ref|XP_003527915.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
          Length = 548

 Score =  266 bits (680), Expect(2) = 2e-90
 Identities = 137/172 (79%), Positives = 147/172 (85%)
 Frame = +2

Query: 560  VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739
            VLAVPMLAPRSYTREDVVELQCHG++VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD
Sbjct: 148  VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLD 207

Query: 740  LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919
            LSQAEN+ +LI+            GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP 
Sbjct: 208  LSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPP 267

Query: 920  LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075
            LD +  MD IH M  +VE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA
Sbjct: 268  LDLNLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 319



 Score = 94.7 bits (234), Expect(2) = 2e-90
 Identities = 50/73 (68%), Positives = 61/73 (83%)
 Frame = +1

Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356
            LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM VSA++G TS+D +LLERI+  +  T
Sbjct: 352  LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGST 411

Query: 1357 GSSALTILVINKI 1395
            GSS   ILV+NKI
Sbjct: 412  GSSTPVILVVNKI 424


>ref|XP_003522812.1| PREDICTED: tRNA modification GTPase MnmE-like [Glycine max]
          Length = 520

 Score =  267 bits (683), Expect(2) = 2e-90
 Identities = 137/172 (79%), Positives = 148/172 (86%)
 Frame = +2

Query: 560  VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739
            VLAVPMLAPRSYTREDVVELQCHG++VCLRRVLR CLEAGA LA+PGEFTLRAFLNGRLD
Sbjct: 120  VLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLD 179

Query: 740  LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919
            LSQAEN+ +LI+            GIQGGFS+LV+SLR QCIELLTEIEARLDFDDEMP 
Sbjct: 180  LSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPP 239

Query: 920  LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075
            LD + +MD IH M  +VE ALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA
Sbjct: 240  LDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 291



 Score = 93.6 bits (231), Expect(2) = 2e-90
 Identities = 49/73 (67%), Positives = 61/73 (83%)
 Frame = +1

Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356
            LLDTAGI +T+DIVEKIGVERSEA+A GAD+IIM +SA++G TS+D +LLERI+  +  T
Sbjct: 324  LLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGST 383

Query: 1357 GSSALTILVINKI 1395
            GSS   ILV+NKI
Sbjct: 384  GSSTPVILVVNKI 396


>ref|XP_002301037.1| predicted protein [Populus trichocarpa] gi|222842763|gb|EEE80310.1|
            predicted protein [Populus trichocarpa]
          Length = 483

 Score =  271 bits (692), Expect(2) = 2e-90
 Identities = 140/172 (81%), Positives = 149/172 (86%)
 Frame = +2

Query: 560  VLAVPMLAPRSYTREDVVELQCHGNDVCLRRVLRACLEAGARLAEPGEFTLRAFLNGRLD 739
            VLAVPMLAPRSYTREDVVELQCHG +VCLRRVLRAC+EAGARLAEPGEFTLRAFLNGRLD
Sbjct: 84   VLAVPMLAPRSYTREDVVELQCHGTEVCLRRVLRACIEAGARLAEPGEFTLRAFLNGRLD 143

Query: 740  LSQAENIEKLISXXXXXXXXXXXXGIQGGFSALVKSLRRQCIELLTEIEARLDFDDEMPS 919
            LSQAEN+ KLIS            GIQGGF++LVKSLR QCIELLTEIEARLDFDDEMP 
Sbjct: 144  LSQAENVGKLISSKSVAAADAALAGIQGGFASLVKSLRTQCIELLTEIEARLDFDDEMPP 203

Query: 920  LDSHSLMDMIHGMCLDVEKALETANYDKLLQSGLQIAIVGRPNVGKSSLLNA 1075
            LD + +MD IH M  +VE AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNA
Sbjct: 204  LDLNLIMDKIHSMSENVENALKTANYDKLLQSGLQIAIVGRPNVGKSSLLNA 255



 Score = 90.1 bits (222), Expect(2) = 2e-90
 Identities = 47/73 (64%), Positives = 57/73 (78%)
 Frame = +1

Query: 1177 LLDTAGIWETEDIVEKIGVERSEAIAIGADVIIMAVSAMDG*TSDDAELLERIEVNQEIT 1356
            LLDTAGI  T+D+VEKIGVERSEA+A+GADVI+M VSA+DG T +D ELL RI   ++  
Sbjct: 288  LLDTAGIRVTDDVVEKIGVERSEAVALGADVIVMTVSALDGWTPEDTELLNRIVSKKKSV 347

Query: 1357 GSSALTILVINKI 1395
            GS    ILV+NKI
Sbjct: 348  GSFTPMILVVNKI 360