BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001983
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299005.1| predicted protein [Populus trichocarpa] gi|2...    76   2e-12
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    74   1e-11
ref|XP_002527480.1| conserved hypothetical protein [Ricinus comm...    70   2e-10
ref|XP_003598109.1| F-box protein [Medicago truncatula] gi|35548...    69   4e-10
ref|XP_003598113.1| F-box protein [Medicago truncatula] gi|35548...    69   5e-10

>ref|XP_002299005.1| predicted protein [Populus trichocarpa] gi|222846263|gb|EEE83810.1|
           predicted protein [Populus trichocarpa]
          Length = 412

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
 Frame = -2

Query: 501 IPVKCLSSQCRLACKTWYNFIRHPHFSEVHYRWAIQNCCSPCVVLCDGMSGFWFIDHQVF 322
           +P K L  + R  CKTW + IR P F ++H   ++   C   +++           HQ+F
Sbjct: 45  LPAKSLM-RFRCVCKTWSSLIRDPFFVKLHQNQSLNKPCKTGLLMS--------TKHQLF 95

Query: 321 DNLETSAPVHSLEFLKEP--EFEKTLQVIGSVNGLLCFSEDQYKCSYPVFYYICNPITGE 148
           ++    A     + L+E      K+  V+G  NGL C   D+++ S      + N  T E
Sbjct: 96  NSHFVFADHEGKQALEEDTISIPKSSNVLGIANGLACIVNDKHRIS------VYNLSTRE 149

Query: 147 HIRLPRARELFHVEVS-AFGFDSTTNEYKVIRF-HYDQDEGEVYTLGSSRW 1
              +P   +   ++   +FGFD   NEYK+++F  +D+++ E++TLG+ RW
Sbjct: 150 STTIPPPPQEIRIQDRLSFGFDPLANEYKIVKFCAHDKEQFEIFTLGTERW 200


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
 Frame = -2

Query: 477 QCRLACKTWYNFIRHPHFSEVHYRWAIQNCCSPCVVL-CDG--MSGFWFIDHQVFDNLET 307
           Q +  C+ W   ++ P   +++   + Q+   PC++L CD    +  +F+D    +  + 
Sbjct: 47  QFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLILHCDFPIRNNLYFVDFAAHEEEKE 106

Query: 306 S-----APVHSLEFLKEPEFEKTLQVIGSVNGLLCFSEDQYKCSYPVFYYICNPITGEHI 142
                 AP  S+     PEFE    V+GS NGLLC S+  Y  S     YI NP TG + 
Sbjct: 107 KVKRIPAPFSSMM----PEFE----VVGSCNGLLCLSDSLYNDSL----YIYNPFTGCYK 154

Query: 141 RLPRARELFHVEV-SAFGFDSTTNEYKVIRFHYDQD----------------EGEVYTLG 13
            LP++ +    EV S FGF+  T EYKVIR  Y ++                E ++ TLG
Sbjct: 155 ELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHGGYPRSRRIIYPLSEVQILTLG 214

Query: 12  SSRW 1
              W
Sbjct: 215 CPEW 218


>ref|XP_002527480.1| conserved hypothetical protein [Ricinus communis]
           gi|223533120|gb|EEF34878.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 379

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
 Frame = -2

Query: 501 IPVKCLSSQCRLACKTWYNFIRHPHFSEVHYRWAIQNCCSPCVVL---CDGMSGFWFIDH 331
           +PVK L  +CR  CKTWY+ I + +F   H R+ I +  +  ++L           F  H
Sbjct: 17  LPVKQLL-RCRCICKTWYSLISNHNFISTHSRYTIDSNNNNYLILRHYSRSNKKERFALH 75

Query: 330 QVFDNLETSAPVHSLEFLKEPEFEKTLQVIGSVNGLLCFSEDQYKCSYPVFYYICNPITG 151
             FD+ +  +    L+F  E  ++   +++GS NG++C +++       +  +  NP  G
Sbjct: 76  --FDDDDMFSEYQELDFPLESSWD-YFEIVGSCNGIICLTDNHSHILKRIVLW--NPSIG 130

Query: 150 EHIRLPRARELFHVE--VSAFGFDSTTNEYKVIRFHYDQ---------DEGEVYTLGSSR 4
             + LP  R  + V   V  FGFDS TN+YKVIR  Y            E E++ L    
Sbjct: 131 LSVTLPLQRISYKVSNVVLGFGFDSRTNDYKVIRIVYYSTNDDSLMVPPEVEIFELSRGT 190

Query: 3   W 1
           W
Sbjct: 191 W 191


>ref|XP_003598109.1| F-box protein [Medicago truncatula] gi|355487157|gb|AES68360.1|
           F-box protein [Medicago truncatula]
          Length = 405

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
 Frame = -2

Query: 501 IPVKCLSSQCRLACKTWYNFIRHPHFSEVHYRWAIQNCCSPCVVLCDGMSGFWFIDHQVF 322
           +PVK L  Q R ACK+W + I +P F++ H   + ++     V+ C   SG   +     
Sbjct: 64  LPVKLLL-QLRCACKSWSSLISNPKFAKKHLSMSTRH-----VLHCISSSGGDILKSYPL 117

Query: 321 DNLETSAPVHSLEFLKEPEFEKTLQVIGSVNGLLCFSEDQYKCSYPVFYYICNPITGEHI 142
           D++ T+A   ++  L+      +   IGS NG+LC + + Y  +  V + + NP   +  
Sbjct: 118 DSIYTNATTTAIPQLEYSVHRCSNYFIGSCNGILCLAAEGYHTNL-VTFRLWNPFIRKFK 176

Query: 141 RLP----RARELFHVEVSAFGFDSTTNEYKVIR----FHYD------QDEGEVYTLGSSR 4
            LP    +    + +++  FG+D  ++ YKV+     F Y        DE +VYTLG + 
Sbjct: 177 ELPPLGDQQTSAYIIKMYGFGYDPVSDNYKVVTVLRVFDYSSHILVKSDEVKVYTLGINS 236

Query: 3   W 1
           W
Sbjct: 237 W 237


>ref|XP_003598113.1| F-box protein [Medicago truncatula] gi|355487161|gb|AES68364.1|
           F-box protein [Medicago truncatula]
          Length = 405

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
 Frame = -2

Query: 501 IPVKCLSSQCRLACKTWYNFIRHPHFSEVHYRWAIQNCCSPCVVLCDGMSGFWFIDHQVF 322
           +PVK L  Q R ACK+W + I +P F++ H   + ++     V+ C   SG   +     
Sbjct: 64  LPVKLLL-QLRCACKSWSSLISNPKFAKKHLSMSTRH-----VLHCISSSGGDILKSYPL 117

Query: 321 DNLETSAPVHSLEFLKEPEFEKTLQVIGSVNGLLCFSEDQYKCSYPVFYYICNPITGEHI 142
           D++ T+A   ++  L+      +   IGS NG+LC + + Y  +  V + + NP   +  
Sbjct: 118 DSIYTNATTTAIPQLEYSFHRCSNYFIGSCNGILCLAAEGYHTNL-VTFRLWNPFIRKFK 176

Query: 141 RLP----RARELFHVEVSAFGFDSTTNEYKVIR----FHYD------QDEGEVYTLGSSR 4
            LP    +    + +++  FG+D  ++ YKV+     F Y        DE +VYTLG + 
Sbjct: 177 ELPPLGDQQTSAYIIKMYGFGYDPVSDNYKVVTVLRVFDYSSHILVKNDEVKVYTLGINS 236

Query: 3   W 1
           W
Sbjct: 237 W 237