BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001956
         (1154 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268094.2| PREDICTED: uncharacterized protein LOC100241...   304   3e-80
ref|XP_002522027.1| pentatricopeptide repeat-containing protein,...   290   5e-76
ref|XP_004142596.1| PREDICTED: uncharacterized protein LOC101209...   289   8e-76
ref|XP_003555560.1| PREDICTED: uncharacterized protein LOC100807...   282   1e-73
ref|NP_187076.2| plastid transcriptionally active 3 [Arabidopsis...   279   8e-73

>ref|XP_002268094.2| PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera]
            gi|296085161|emb|CBI28656.3| unnamed protein product
            [Vitis vinifera]
          Length = 884

 Score =  304 bits (778), Expect = 3e-80
 Identities = 150/209 (71%), Positives = 173/209 (82%)
 Frame = -3

Query: 1104 DRVKEKEVEAVKPLQMIGVQLLKDSEQTAXXXXXXXXXXXXXXXVEXXXXXDWFPEDLQE 925
            DRVK+KEVEA KPLQMIGVQLLKDS+QT                 E     DWFP D+ E
Sbjct: 667  DRVKDKEVEAAKPLQMIGVQLLKDSDQTTPATRKSRRKLSRASM-EDSDDDDWFPLDIHE 725

Query: 924  AFKMMRERKVFDESDMYTIADVWGWTWDREIKKRTPQKWSQEWEVELAIKVLLKVIELGS 745
            AFK MRERK+FD SDMYTIADVWGWTW++E+K + P+ W+QEWEVELAIKV+LKVIELG 
Sbjct: 726  AFKEMRERKIFDVSDMYTIADVWGWTWEKELKNKPPRSWTQEWEVELAIKVMLKVIELGG 785

Query: 744  KPTIGDCAMILRAAIKAPLPTAFFEILQTTHSLGYVFGSPLYDEMILLCLDLGELDAAIA 565
             PTIGDCAMILRAAI+APLP+AF ++LQTTH LGYVFGSPLY+E+I+LCLDLGELDAAIA
Sbjct: 786  TPTIGDCAMILRAAIRAPLPSAFLKVLQTTHKLGYVFGSPLYNEVIILCLDLGELDAAIA 845

Query: 564  IVAEMETAGIQVPDQTLDRVLSARQSIDS 478
            IVA+MET+GI VPD+TLDRV+SARQ ID+
Sbjct: 846  IVADMETSGIAVPDETLDRVISARQMIDT 874


>ref|XP_002522027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538831|gb|EEF40431.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 889

 Score =  290 bits (742), Expect = 5e-76
 Identities = 148/210 (70%), Positives = 167/210 (79%)
 Frame = -3

Query: 1098 VKEKEVEAVKPLQMIGVQLLKDSEQTAXXXXXXXXXXXXXXXVEXXXXXDWFPEDLQEAF 919
            VKEKEVEA KPLQMIGVQLLKDS+                   E     DWFPED  EAF
Sbjct: 677  VKEKEVEAKKPLQMIGVQLLKDSDHLTTRSKKSKRRSARASV-EDDADDDWFPEDPFEAF 735

Query: 918  KMMRERKVFDESDMYTIADVWGWTWDREIKKRTPQKWSQEWEVELAIKVLLKVIELGSKP 739
            K +RERKVFD  DMYTIADVWGWTW+REIK R PQKWSQEWEVELAIK++LK  +L   P
Sbjct: 736  KELRERKVFDVEDMYTIADVWGWTWEREIKNRPPQKWSQEWEVELAIKLMLKA-QLSGTP 794

Query: 738  TIGDCAMILRAAIKAPLPTAFFEILQTTHSLGYVFGSPLYDEMILLCLDLGELDAAIAIV 559
            TIGDCAMILRAAI+AP+P+AF +ILQTTHSLGY FGSPLYDE+I LCLD+GELDAAIAIV
Sbjct: 795  TIGDCAMILRAAIRAPMPSAFLKILQTTHSLGYTFGSPLYDEVISLCLDIGELDAAIAIV 854

Query: 558  AEMETAGIQVPDQTLDRVLSARQSIDSPVE 469
            A++E+ GI VPDQTLDRV+SARQ+ D+PV+
Sbjct: 855  ADLESTGITVPDQTLDRVISARQAADNPVD 884


>ref|XP_004142596.1| PREDICTED: uncharacterized protein LOC101209618 [Cucumis sativus]
          Length = 1177

 Score =  289 bits (740), Expect = 8e-76
 Identities = 147/210 (70%), Positives = 169/210 (80%)
 Frame = -3

Query: 1107 GDRVKEKEVEAVKPLQMIGVQLLKDSEQTAXXXXXXXXXXXXXXXVEXXXXXDWFPEDLQ 928
            G+RV +KEVEA KPLQMIGVQLLKD +Q                  E     DWFPED+ 
Sbjct: 946  GERVIKKEVEAKKPLQMIGVQLLKDVDQPTTTSKKSRRRSSRASL-EDDRDEDWFPEDIF 1004

Query: 927  EAFKMMRERKVFDESDMYTIADVWGWTWDREIKKRTPQKWSQEWEVELAIKVLLKVIELG 748
            EAFK +++RKVFD SDMYTIADVWGWTW+RE+K R P++WSQEWEVELAIK++ KVIELG
Sbjct: 1005 EAFKELQKRKVFDVSDMYTIADVWGWTWERELKNRPPRRWSQEWEVELAIKIMHKVIELG 1064

Query: 747  SKPTIGDCAMILRAAIKAPLPTAFFEILQTTHSLGYVFGSPLYDEMILLCLDLGELDAAI 568
              PTIGDCAMILRAAIKAPLP+AF +ILQTTH LGYVFGSPLYDE+I LCLDLGELDAAI
Sbjct: 1065 GIPTIGDCAMILRAAIKAPLPSAFLKILQTTHGLGYVFGSPLYDEVITLCLDLGELDAAI 1124

Query: 567  AIVAEMETAGIQVPDQTLDRVLSARQSIDS 478
            AIVA++ET GI V D+TLDRV+SARQ+ D+
Sbjct: 1125 AIVADLETTGILVHDETLDRVISARQTNDA 1154


>ref|XP_003555560.1| PREDICTED: uncharacterized protein LOC100807191 [Glycine max]
          Length = 887

 Score =  282 bits (721), Expect = 1e-73
 Identities = 140/213 (65%), Positives = 167/213 (78%)
 Frame = -3

Query: 1104 DRVKEKEVEAVKPLQMIGVQLLKDSEQTAXXXXXXXXXXXXXXXVEXXXXXDWFPEDLQE 925
            +R+KEKEVEA +PLQMIGVQLLKD +Q                  E     DW P DL E
Sbjct: 670  NRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKKFKRSRKVQV--EDDDDDDWLPLDLFE 727

Query: 924  AFKMMRERKVFDESDMYTIADVWGWTWDREIKKRTPQKWSQEWEVELAIKVLLKVIELGS 745
            AF+ MR+RK+FD SDMYT+AD WGWTW+RE+KK+ P++WSQEWEVELAIKV+ KVIELG 
Sbjct: 728  AFEEMRKRKIFDVSDMYTLADAWGWTWERELKKKPPRRWSQEWEVELAIKVMQKVIELGG 787

Query: 744  KPTIGDCAMILRAAIKAPLPTAFFEILQTTHSLGYVFGSPLYDEMILLCLDLGELDAAIA 565
            +PTIGDCAMILRAAI+APLP+AF  ILQTTHSLG+ FGSPLYDE+I LC+DLGELDAA+A
Sbjct: 788  RPTIGDCAMILRAAIRAPLPSAFLTILQTTHSLGFKFGSPLYDEIISLCVDLGELDAAVA 847

Query: 564  IVAEMETAGIQVPDQTLDRVLSARQSIDSPVEG 466
            +VA++ET GI V D TLDRV+SA+Q ID+   G
Sbjct: 848  VVADLETTGISVSDLTLDRVISAKQRIDNTSNG 880


>ref|NP_187076.2| plastid transcriptionally active 3 [Arabidopsis thaliana]
            gi|332640537|gb|AEE74058.1| plastid transcriptionally
            active 3 [Arabidopsis thaliana]
          Length = 910

 Score =  279 bits (714), Expect = 8e-73
 Identities = 141/210 (67%), Positives = 166/210 (79%)
 Frame = -3

Query: 1104 DRVKEKEVEAVKPLQMIGVQLLKDSEQTAXXXXXXXXXXXXXXXVEXXXXXDWFPEDLQE 925
            D VK K  +A K LQMIGVQLLK+S++                 +E     DWFPE+  E
Sbjct: 690  DLVKNKAADAKKHLQMIGVQLLKESDEA--NRTKKRGKRASRMTLEDDADEDWFPEEPFE 747

Query: 924  AFKMMRERKVFDESDMYTIADVWGWTWDREIKKRTPQKWSQEWEVELAIKVLLKVIELGS 745
            AFK MRERKVFD +DMYTIADVWGWTW+++ K +TP+KWSQEWEVELAI ++ KVIELG 
Sbjct: 748  AFKEMRERKVFDVADMYTIADVWGWTWEKDFKNKTPRKWSQEWEVELAIVLMTKVIELGG 807

Query: 744  KPTIGDCAMILRAAIKAPLPTAFFEILQTTHSLGYVFGSPLYDEMILLCLDLGELDAAIA 565
             PTIGDCA+ILRAA++AP+P+AF +ILQTTHSLGY FGSPLYDE+I LCLDLGELDAAIA
Sbjct: 808  IPTIGDCAVILRAALRAPMPSAFLKILQTTHSLGYSFGSPLYDEIITLCLDLGELDAAIA 867

Query: 564  IVAEMETAGIQVPDQTLDRVLSARQSIDSP 475
            IVA+MET GI VPDQTLD+V+SARQS +SP
Sbjct: 868  IVADMETTGITVPDQTLDKVISARQSNESP 897