BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001950
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]    53   7e-11
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s...    53   7e-11
gb|AFK37258.1| unknown [Lotus japonicus]                               55   1e-08
gb|AFK40316.1| unknown [Lotus japonicus]                               54   1e-07
ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III s...    49   3e-06

>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
          Length = 388

 Score = 53.1 bits (126), Expect(2) = 7e-11
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +2

Query: 17  VQSAARNQTRESIDEFLTSWVKFDPAKAEKLNLINIKPSPAIEI 148
           V+SAA NQTRESI+E L    K+D AKAE LN+INI+P+  +EI
Sbjct: 69  VESAACNQTRESINELLEKCKKYDLAKAEILNIINIRPASPVEI 112



 Score = 38.5 bits (88), Expect(2) = 7e-11
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 156 SAIEIDSIVENCEQRMGNEDEALVKMIIEMLPAP 257
           S +EID I+E  E+RMG   E L++M+I +LP P
Sbjct: 108 SPVEIDPIIEESEKRMGEGIEDLIEMVITVLPPP 141


>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
           vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score = 53.1 bits (126), Expect(2) = 7e-11
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +2

Query: 17  VQSAARNQTRESIDEFLTSWVKFDPAKAEKLNLINIKPSPAIEI 148
           V+SAA NQTRESI+E L    K+D AKAE LN+INI+P+  +EI
Sbjct: 48  VESAACNQTRESINELLEKCKKYDLAKAEILNIINIRPASPVEI 91



 Score = 38.5 bits (88), Expect(2) = 7e-11
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 156 SAIEIDSIVENCEQRMGNEDEALVKMIIEMLPAP 257
           S +EID I+E  E+RMG   E L++M+I +LP P
Sbjct: 87  SPVEIDPIIEESEKRMGEGIEDLIEMVITVLPPP 120


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score = 54.7 bits (130), Expect(2) = 1e-08
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = +2

Query: 17  VQSAARNQTRESIDEFLTSWVKFDPAKAEKLNLINIKPSPAIEI 148
           V +AA NQTRESI+EF+ S  K D AKAE LN+INI+P+ A+E+
Sbjct: 48  VNTAASNQTRESINEFMASVKKHDLAKAEVLNIINIRPAAAVEM 91



 Score = 29.3 bits (64), Expect(2) = 1e-08
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 SAIEIDSIVENCEQRMGNED-EALVKMIIEMLPAP 257
           +A+E+  I+E CE R  +E+   +V+++ + LPAP
Sbjct: 87  AAVEMFPIIEECESRFPDEEVTEIVELVKKTLPAP 121


>gb|AFK40316.1| unknown [Lotus japonicus]
          Length = 162

 Score = 53.5 bits (127), Expect(2) = 1e-07
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +2

Query: 17  VQSAARNQTRESIDEFLTSWVKFDPAKAEKLNLINIKPSPAIEI 148
           V +AA NQTRESI+EF+ S  K D AKAE LN+INI P+ A+E+
Sbjct: 48  VNTAASNQTRESINEFMASVKKHDLAKAEVLNIINITPAAAVEM 91



 Score = 27.3 bits (59), Expect(2) = 1e-07
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 SAIEIDSIVENCEQRMGNED-EALVKMIIEMLPAP 257
           +A+E+  I+E CE R  +E+   +V++  + LPAP
Sbjct: 87  AAVEMFPIIEECEPRFPDEEVTEIVELAKKTLPAP 121


>ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Glycine max]
          Length = 161

 Score = 48.5 bits (114), Expect(2) = 3e-06
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +2

Query: 17  VQSAARNQTRESIDEFLTSWVKFDPAKAEKLNLINIKPSPAIEI 148
           V +AA  QTRESI+EFLTS  + D AKAE LN++NI P+  +E+
Sbjct: 48  VDTAASVQTRESINEFLTSVKQHDLAKAEVLNILNIGPAAEVEL 91



 Score = 27.3 bits (59), Expect(2) = 3e-06
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 162 IEIDSIVENCEQRMGNEDE-ALVKMIIEMLPAP 257
           +E+  I+E+C++R G+E    +V+++ + LP P
Sbjct: 89  VELYPIIEDCDERFGDEGVLEIVELVKKTLPLP 121