BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001817
         (4003 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containi...  1348   0.0  
ref|XP_002325381.1| predicted protein [Populus trichocarpa] gi|2...  1248   0.0  
ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containi...  1199   0.0  
ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containi...  1195   0.0  
ref|XP_002520026.1| pentatricopeptide repeat-containing protein,...  1163   0.0  

>ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Vitis vinifera]
          Length = 1071

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 687/1086 (63%), Positives = 855/1086 (78%), Gaps = 14/1086 (1%)
 Frame = -3

Query: 3956 MDSLKTAFLSTTTTLHPIPSKQPKNLTS----------YISCNSITPDPWTLSDGNNS-- 3813
            ++ LKT+F+ TT    P+P K  KNL S           I C S+ PDPW+LS GN    
Sbjct: 5    IEPLKTSFICTTP---PLPLKPSKNLKSCQNPKKPRNLIIHC-SVHPDPWSLSTGNRPKP 60

Query: 3812 YKKQKKKPLSDDNARRIIKGKAKYLSVLRRNQGSHAQTPKWIQRSPEQMVQYLKDDRDGH 3633
              K  K PLSDDNARRIIKGKA+YLSVLRRNQG  AQTPKWI+R+PEQMVQYL+DDR+GH
Sbjct: 61   ISKNPKNPLSDDNARRIIKGKARYLSVLRRNQGPQAQTPKWIKRTPEQMVQYLQDDRNGH 120

Query: 3632 LYGKHVVAAIRIVRNLATKAQGSYNMREVMASFVTKLTFKEMCIVLKEQKGWRQVQDFFS 3453
            LYGKHVVAAIRIVR+LA +  GSYNMREVM SFV KL+F+EMC+VLKEQ+GWRQ +DFF 
Sbjct: 121  LYGKHVVAAIRIVRSLAARPDGSYNMREVMGSFVAKLSFREMCVVLKEQRGWRQARDFFG 180

Query: 3452 WMKLQLQYQPSVVVYTIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCAYARW 3273
            WMKLQL YQPSV+VYTI+LR+YGQVGKIKLAEQ FLEMLEAGCEPDEVACGTMLC YARW
Sbjct: 181  WMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARW 240

Query: 3272 GRHKAMLSFYSAVQDRRIVPSIAVFNFMISSLQKKSHHKKVIFLWRHMTDAGVVPNHFTY 3093
            GRHKAMLSFYSAVQ+R I+PSIAVFNFM+SSLQKKS H KVI LWR M D GVVPN FTY
Sbjct: 241  GRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTY 300

Query: 3092 TIVICSYAKEGLLKNAFEVFNDMRKSQFIPEEVTYSLLINLSAKQGNWDKSLNLYEEMRC 2913
            T+VI S  K+GL++ +F+ F +M+   F+PEEVTYSLLI+LS+K GN D+++ LYE+MR 
Sbjct: 301  TVVISSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRY 360

Query: 2912 QGIIPSNYTCATLLMLHYRNRDYQKALQLLSEMDKIKIAADEVIYGIIIRIYGKLGLYDD 2733
            + I+PSNYTCA+LL L+Y+N DY +A+ L SEM+K KI ADEVIYG++IRIYGKLGLY+D
Sbjct: 361  RRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYED 420

Query: 2732 AQKTFEDIEKLGLLNDEKTYVAMAQVHLNAGSIEKALSVLELMRSRNIWYSRFAYIVLLQ 2553
            A+KTF++ E+LGLL +EKTY+AMAQVHLN+G+ EKAL+++ELMRSRNIW+SRF+YIVLLQ
Sbjct: 421  AEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQ 480

Query: 2552 CYSMKEDVASAEVTFQALSKTGLPDAASCKDMLNLYARLGLLEKANAFIVRMRKDLVQFD 2373
            CY MKED+ASAE TFQALSKTGLPDA SC DMLNLY +L LLEKA  FI ++RKD V+FD
Sbjct: 481  CYVMKEDLASAEATFQALSKTGLPDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVEFD 540

Query: 2372 EELYMSVMKLYCNEGMLKDAEELTEEMRKTASFKDSKFLQTLLMAKHGESRIIVNADESL 2193
             EL  +VMK+YC +GML+DA++L +EM     FKDS+F+QTL +  H E           
Sbjct: 541  MELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLVMHEE----------- 589

Query: 2192 AASKQPETLVLAKADNVGNAVNQPNIMALKMLLSLYMENGDDGKTNHIVKILLQSASGLS 2013
              S++P+ +     D+   A+NQ N +AL+++L LY E G+  K   I+K+LL++A GLS
Sbjct: 590  --SERPDYV-----DDTVEALNQNNTLALELMLGLYSEVGNACKVEEILKMLLKTAGGLS 642

Query: 2012 EASQLIRKFVSEGNVAKAQSIHELVIKLGDRPTDAASASLITSYGRLQQLKRAHEVFSSV 1833
             AS LI KF  EG+++KAQ++++ ++KLG    DA+ ASLIT YG+  +LK+A EVFS++
Sbjct: 643  VASHLISKFTREGDISKAQNLNDQLVKLGRGAEDASIASLITLYGKQHKLKKAIEVFSAI 702

Query: 1832 AEFLTSSKPIYKSMIDAYLKCGKPDEALMLYNEMIKKGIKVDAVTISVLVNAMTSYGKQQ 1653
             E  TS K IY SMIDAY KCGK +EA  LY E+  KGI++  V+IS +V+A+ +YGK Q
Sbjct: 703  -EGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQ 761

Query: 1652 ESENIIRKSFQEKHELDTVAYNTFIKAMLEAGKLNFASRIYEQMLTSEVVPSIQTYSTMI 1473
            E+EN+IR+SF++  ELDTVAYNTFI AML AG+L+FA+ IY++M++  V PSIQTY+TMI
Sbjct: 762  EAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMI 821

Query: 1472 SVYGRGHKLTKAIEMFNLV--SSSDVSMDEKAYTTMISYYGKAGRSQEASLLFIKMREEG 1299
            SVYGRG KL KA+EMFN    S   VS+DEK YT +ISYYGKAG+S EASLLF +M+EEG
Sbjct: 822  SVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEG 881

Query: 1298 IRPGKVTYNIMMNMYASVALDDEAEKLLQAMEKDGCSPDSFTYQALIRAYTVSQKFLKAE 1119
            I+PGKV+YNIM+N+YA+  L  EA++L QAM +DGCSPDS TY ALIRAYT S KFL+AE
Sbjct: 882  IKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAE 941

Query: 1118 ETIIAMQKKGLCPSIAHFGYLLSAYAKHGLMKDAERIYGELTRAALFPDLECHCSMLRGY 939
            ETI++MQ +G+ PS  HF  LLSA+AK G  ++AER+Y  L  A L PD+ C+ +MLRGY
Sbjct: 942  ETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGY 1001

Query: 938  MDYGHVEEAISLFEHVSESVQPDRYLLSSAVHLYRFAGDELKASSILDYMNRLGIPFLNT 759
            +DYG VE+ I+ FE + ESV+PDR+++SSAVH Y+ AG EL+A  ILD M  LGIPFL  
Sbjct: 1002 LDYGCVEKGITFFEQIRESVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGIPFLKN 1061

Query: 758  LEIGSK 741
            LE+GSK
Sbjct: 1062 LEVGSK 1067


>ref|XP_002325381.1| predicted protein [Populus trichocarpa] gi|222862256|gb|EEE99762.1|
            predicted protein [Populus trichocarpa]
          Length = 1071

 Score = 1248 bits (3230), Expect = 0.0
 Identities = 638/1070 (59%), Positives = 801/1070 (74%), Gaps = 11/1070 (1%)
 Frame = -3

Query: 3914 LHPIPSKQPKNLTSYISCN------SITPDPWTLSDGNNSYK-----KQKKKPLSDDNAR 3768
            L P P+ + K     I+ N      SI PDPW+LSDGNN  K     K  K PLSDDNAR
Sbjct: 11   LPPPPNSKTKPKPKSINPNKVPIKSSIHPDPWSLSDGNNISKPKPKSKNPKNPLSDDNAR 70

Query: 3767 RIIKGKAKYLSVLRRNQGSHAQTPKWIQRSPEQMVQYLKDDRDGHLYGKHVVAAIRIVRN 3588
            R+I  +A+YLS+LR++QG  AQTPKWI+R+PEQMV YL+DDR+GHLYGKHVVAAI+ VR 
Sbjct: 71   RMIIARARYLSLLRKHQGPQAQTPKWIKRTPEQMVMYLEDDRNGHLYGKHVVAAIKRVRG 130

Query: 3587 LATKAQGSYNMREVMASFVTKLTFKEMCIVLKEQKGWRQVQDFFSWMKLQLQYQPSVVVY 3408
            LA K     +MR +M+ FV KL+F+EMC+VLKEQKGWR+ +DFFSWMKLQL Y PSV+VY
Sbjct: 131  LAGKKNEERDMRLLMSGFVGKLSFREMCVVLKEQKGWREARDFFSWMKLQLSYHPSVIVY 190

Query: 3407 TIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCAYARWGRHKAMLSFYSAVQD 3228
            TI+LRIYGQVGKIKLAEQTFLEMLE GCEPDEVACGTMLC+YARWG HKAM SFYSA+++
Sbjct: 191  TILLRIYGQVGKIKLAEQTFLEMLEVGCEPDEVACGTMLCSYARWGHHKAMFSFYSAIKE 250

Query: 3227 RRIVPSIAVFNFMISSLQKKSHHKKVIFLWRHMTDAGVVPNHFTYTIVICSYAKEGLLKN 3048
            R IV SIAV+NFM+SSLQKKS H KVI LWR M D  V PN+FTYT+VI S  KEGL K 
Sbjct: 251  RGIVVSIAVYNFMLSSLQKKSLHGKVIVLWRQMVDKRVAPNNFTYTVVISSLVKEGLHKE 310

Query: 3047 AFEVFNDMRKSQFIPEEVTYSLLINLSAKQGNWDKSLNLYEEMRCQGIIPSNYTCATLLM 2868
            AF+ FN+MR    +PEEV YSLLI +S K  NW ++L LYE+MR   I+PS +TCA+LL 
Sbjct: 311  AFKTFNEMRTMGLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKFTCASLLT 370

Query: 2867 LHYRNRDYQKALQLLSEMDKIKIAADEVIYGIIIRIYGKLGLYDDAQKTFEDIEKLGLLN 2688
            ++Y+ +DY KAL L  +M    IAADEVIYG++IRIYGKLGLY+DAQKTFE+ E+ GLL+
Sbjct: 371  MYYKIKDYSKALSLFIQMQSKNIAADEVIYGLLIRIYGKLGLYEDAQKTFEETERSGLLS 430

Query: 2687 DEKTYVAMAQVHLNAGSIEKALSVLELMRSRNIWYSRFAYIVLLQCYSMKEDVASAEVTF 2508
            +EKTY+AMAQVHL++G+ EKALSV+E+M+SRNIW SRFAYIVLLQCY MKED+ SAEVTF
Sbjct: 431  NEKTYLAMAQVHLSSGNFEKALSVIEVMKSRNIWLSRFAYIVLLQCYCMKEDLDSAEVTF 490

Query: 2507 QALSKTGLPDAASCKDMLNLYARLGLLEKANAFIVRMRKDLVQFDEELYMSVMKLYCNEG 2328
            QALSK G PDA SC DM+NLY RLG  EKA  FIV +RK LV FDEEL+ +V+K++C EG
Sbjct: 491  QALSKIGCPDAGSCSDMINLYVRLGFTEKAKDFIVHIRKYLVDFDEELFNTVIKVFCKEG 550

Query: 2327 MLKDAEELTEEMRKTASFKDSKFLQTLLMAKHGESRIIVNADESLAASKQPETLVLAKAD 2148
            MLKDAE+L  EM   ASFKD++F +T     +GE++ + N              ++  AD
Sbjct: 551  MLKDAEQLVYEMGTNASFKDNRFFKTFSNVMYGENKELEN--------------IMVSAD 596

Query: 2147 NVGNAVNQPNIMALKMLLSLYMENGDDGKTNHIVKILLQSASGLSEASQLIRKFVSEGNV 1968
                        AL ++LSLY+ENG+  KT   +K++L++ SGLS  SQL+  F+ EG++
Sbjct: 597  TT----------ALGLILSLYLENGNFTKTEEFLKLILEAGSGLSVVSQLVNSFIREGDL 646

Query: 1967 AKAQSIHELVIKLGDRPTDAASASLITSYGRLQQLKRAHEVFSSVAEFLTSSKPIYKSMI 1788
             KA++++  +IKLG +  D   ASLI++YGR  +LK+A EVF++VA+      PI  SMI
Sbjct: 647  FKAEAVNGQLIKLGSKLEDETIASLISAYGRQNKLKQAQEVFAAVADSPILGNPIINSMI 706

Query: 1787 DAYLKCGKPDEALMLYNEMIKKGIKVDAVTISVLVNAMTSYGKQQESENIIRKSFQEKHE 1608
            DA +KCGK +EA +LY E+ ++G  + AV I ++VNA+T+ GK  E+ENIIR+S Q++ E
Sbjct: 707  DACVKCGKFEEAYLLYEEVAQRGHNLGAVGIGMVVNALTNSGKHPEAENIIRRSIQDRME 766

Query: 1607 LDTVAYNTFIKAMLEAGKLNFASRIYEQMLTSEVVPSIQTYSTMISVYGRGHKLTKAIEM 1428
            LDTVAYN FIKAMLEAG+L+FA+ IYE ML     PSIQTY+TMISVYGRG KL KA+E+
Sbjct: 767  LDTVAYNIFIKAMLEAGRLHFATSIYEHMLLLGFTPSIQTYNTMISVYGRGRKLDKAVEV 826

Query: 1427 FNLVSSSDVSMDEKAYTTMISYYGKAGRSQEASLLFIKMREEGIRPGKVTYNIMMNMYAS 1248
            FN   SS VS+DEKAY  MI+YYGKAG+  EASLLF KM+EEGI+PG V+YN+M  +YA 
Sbjct: 827  FNTACSSGVSLDEKAYMNMINYYGKAGKRHEASLLFAKMQEEGIKPGVVSYNVMAKVYAM 886

Query: 1247 VALDDEAEKLLQAMEKDGCSPDSFTYQALIRAYTVSQKFLKAEETIIAMQKKGLCPSIAH 1068
              L  E E+L + ME+DGC PDSFTY +L++AY+ S K L+AEETI AMQKKG+ PS AH
Sbjct: 887  SGLYHEVEELFKVMERDGCPPDSFTYLSLVQAYSESSKCLEAEETINAMQKKGIPPSCAH 946

Query: 1067 FGYLLSAYAKHGLMKDAERIYGELTRAALFPDLECHCSMLRGYMDYGHVEEAISLFEHVS 888
            F +LL A  K GLM +AER+Y EL  A L PDL C  +MLRGYMDYGHVE+ I  +E + 
Sbjct: 947  FKHLLYALVKAGLMVEAERVYMELLSAGLNPDLVCCRAMLRGYMDYGHVEKGIKFYEQIR 1006

Query: 887  ESVQPDRYLLSSAVHLYRFAGDELKASSILDYMNRLGIPFLNTLEIGSKM 738
            E V+ DR+++S+AVHLY+ AG +L+A  + + M  L I FLN LE+G K+
Sbjct: 1007 ELVKADRFIMSAAVHLYKSAGKKLEAEVLFESMKSLRISFLNELEVGLKI 1056


>ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Glycine max]
          Length = 1079

 Score = 1199 bits (3103), Expect = 0.0
 Identities = 614/1092 (56%), Positives = 808/1092 (73%), Gaps = 21/1092 (1%)
 Frame = -3

Query: 3956 MDSLKTAFLSTTTTLHPIPSKQPKNLTS--------------YISCNSITPDPWTLSDGN 3819
            M+ LK+ FL +T+ L P PS QP ++T               +I C +I  DPW+ + G+
Sbjct: 1    MECLKSPFLFSTSLLPP-PSHQPYSITPNIKNKKNKKPRVPIFIRC-TIQRDPWSPTSGD 58

Query: 3818 NSYKKQK----KKPLSDDNARRIIKGKAKYLSVLRRNQGSHAQTPKWIQRSPEQMVQYLK 3651
             +  K +    KKPLSDDNARRIIKGKA Y S+LRRNQG  AQTP+WI+R+PEQMV+YL+
Sbjct: 59   PTRPKPRSRNPKKPLSDDNARRIIKGKAAYQSILRRNQGPQAQTPRWIKRTPEQMVRYLQ 118

Query: 3650 DDRDGHLYGKHVVAAIRIVRNLATKAQGSYNMREVMASFVTKLTFKEMCIVLKEQKGWRQ 3471
            DDR+G LYG+HV+AA++ VR+L+ +  G Y+MR VMASFV KL+FKEMC+VLKEQKGWRQ
Sbjct: 119  DDRNGQLYGRHVLAAVKKVRSLSQRVDGDYDMRMVMASFVGKLSFKEMCVVLKEQKGWRQ 178

Query: 3470 VQDFFSWMKLQLQYQPSVVVYTIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTML 3291
            V+DFF+WMKLQL Y+PSV+VYTIVLR+YGQVGK+KLAE+ FLEML+ GCEPDEVACGTML
Sbjct: 179  VRDFFAWMKLQLSYRPSVIVYTIVLRLYGQVGKLKLAEEIFLEMLDVGCEPDEVACGTML 238

Query: 3290 CAYARWGRHKAMLSFYSAVQDRRIVPSIAVFNFMISSLQKKSHHKKVIFLWRHMTDAGVV 3111
            C+YARWGRHKAMLSFYSA+++R I+ S+AVFNFM+SSLQKKS H++V+ +W+ M   GV+
Sbjct: 239  CSYARWGRHKAMLSFYSAIKERGIILSVAVFNFMMSSLQKKSLHREVVHVWKDMLGKGVI 298

Query: 3110 PNHFTYTIVICSYAKEGLLKNAFEVFNDMRKSQFIPEEVTYSLLINLSAKQGNWDKSLNL 2931
            PN+FTYT+ I S+ KEGL ++AF+ F++MR    +PEE+TYSLLINL+AK GN D+   L
Sbjct: 299  PNNFTYTVAISSFVKEGLHEDAFKTFDEMRNYGVVPEELTYSLLINLNAKSGNRDEVQRL 358

Query: 2930 YEEMRCQGIIPSNYTCATLLMLHYRNRDYQKALQLLSEMDKIKIAADEVIYGIIIRIYGK 2751
            YE+MR +GIIPSNYTCA+LL L+Y+  DY +AL L SEM + KI+ DEVIYG++IRIYGK
Sbjct: 359  YEDMRFRGIIPSNYTCASLLSLYYKYEDYPRALSLFSEMVRNKISTDEVIYGLLIRIYGK 418

Query: 2750 LGLYDDAQKTFEDIEKLGLLNDEKTYVAMAQVHLNAGSIEKALSVLELMRSRNIWYSRFA 2571
            LGLY+DA KTFE+ +  G L  EKTY+AMAQVHL +G+++KAL V+ELM+S N+W+SRFA
Sbjct: 419  LGLYEDAHKTFEETKNRGQLTSEKTYLAMAQVHLTSGNVDKALEVIELMKSSNLWFSRFA 478

Query: 2570 YIVLLQCYSMKEDVASAEVTFQALSKTGLPDAASCKDMLNLYARLGLLEKANAFIVRMRK 2391
            YIVLLQCY MKEDVASAE TF ALSKTG PDA SC DML+LY  L L  KA  FIV++R+
Sbjct: 479  YIVLLQCYVMKEDVASAEGTFLALSKTGPPDAGSCNDMLSLYMGLNLTNKAKEFIVQIRE 538

Query: 2390 DLVQFDEELYMSVMKLYCNEGMLKDAEELTEEMRKTASFKDSKFLQTL--LMAKHGESRI 2217
            +   FD+ELY +VMK+YC EGML +AE+LT +M KT  FK+ KF  T   ++ +H     
Sbjct: 539  NETNFDKELYRTVMKVYCKEGMLPEAEQLTNQMVKTEYFKNDKFFMTFYWILCEHKGD-- 596

Query: 2216 IVNADESLAASKQPETLVLAKADNVGNAVNQPNIMALKMLLSLYMENGDDGKTNHIVKIL 2037
             + +D+ L A +                +++ N  AL ++LSLY+ NG+  KT  ++K+L
Sbjct: 597  -MESDDELVAIE---------------PIDKFNATALGLMLSLYLANGNFNKTKILLKLL 640

Query: 2036 LQSASGLSE-ASQLIRKFVSEGNVAKAQSIHELVIKLGDRPTDAASASLITSYGRLQQLK 1860
            L  A+G S+  SQLI     EG ++KA+ ++  + KLG R  +A  ASLI+ YG+ Q LK
Sbjct: 641  LGYAAGGSKIVSQLIINLSKEGEISKAELLNHQLTKLGCRMDEATVASLISHYGKQQMLK 700

Query: 1859 RAHEVFSSVAEFLTSSKPIYKSMIDAYLKCGKPDEALMLYNEMIKKGIKVDAVTISVLVN 1680
            +A ++F+      TSSK +Y SMI+AY KCGK ++A +LY +   +G  + AV IS+ VN
Sbjct: 701  QAEDIFAEYINSPTSSKVLYNSMINAYAKCGKQEKAYLLYKQATGEGRDLGAVGISIAVN 760

Query: 1679 AMTSYGKQQESENIIRKSFQEKHELDTVAYNTFIKAMLEAGKLNFASRIYEQMLTSEVVP 1500
            ++T+ GK QE+ENI+++S +E  ELDTVAYNTFIKAMLEAGKL+FAS I+E M++S V P
Sbjct: 761  SLTNGGKHQEAENIVQRSLEENLELDTVAYNTFIKAMLEAGKLHFASSIFEHMISSGVAP 820

Query: 1499 SIQTYSTMISVYGRGHKLTKAIEMFNLVSSSDVSMDEKAYTTMISYYGKAGRSQEASLLF 1320
            SI+T++TMISVYG+  KL +A+EMFN  SS  V +DEK Y  +I YYGKAG   EAS LF
Sbjct: 821  SIETFNTMISVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYYGKAGLMLEASQLF 880

Query: 1319 IKMREEGIRPGKVTYNIMMNMYASVALDDEAEKLLQAMEKDGCSPDSFTYQALIRAYTVS 1140
             KM+E GI+PGKV+YNIM+N+YA+  +  E EKL   M++ G  PDSFTY +L++AYT S
Sbjct: 881  SKMQEGGIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDSFTYLSLVQAYTRS 940

Query: 1139 QKFLKAEETIIAMQKKGLCPSIAHFGYLLSAYAKHGLMKDAERIYGELTRAALFPDLECH 960
              + KAEETI AMQ KG+ PS  HF  LL A+ K GL+ +A+R+Y +L+   L PDL CH
Sbjct: 941  LNYSKAEETIHAMQSKGIPPSCVHFNILLHAFIKAGLIHEAKRVYEDLSTFGLVPDLVCH 1000

Query: 959  CSMLRGYMDYGHVEEAISLFEHVSESVQPDRYLLSSAVHLYRFAGDELKASSILDYMNRL 780
             +ML GY+  G+VEE I+ FE + ES + DR+++S+AVH Y+ AG   +A  IL+ MN +
Sbjct: 1001 RTMLNGYLKCGYVEEGINFFESICESTKSDRFIMSAAVHFYKSAGKGRQAKEILNLMNNM 1060

Query: 779  GIPFLNTLEIGS 744
            GIPFL  LE+GS
Sbjct: 1061 GIPFLKKLEVGS 1072


>ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Cucumis sativus]
          Length = 1062

 Score = 1195 bits (3091), Expect = 0.0
 Identities = 632/1085 (58%), Positives = 796/1085 (73%), Gaps = 12/1085 (1%)
 Frame = -3

Query: 3956 MDSLKTAFLSTT--------TTLHPIPSKQPKNLTSYISCNSITPDPWTLSDGNNSYKKQ 3801
            M+SLKT+FLS          TT  P+ S+   N   +I   S+TPDPW+LSDGN +  K 
Sbjct: 1    MESLKTSFLSPILLPPPFIRTTRSPLKSR---NAQIFIIRLSVTPDPWSLSDGNPARPKP 57

Query: 3800 K----KKPLSDDNARRIIKGKAKYLSVLRRNQGSHAQTPKWIQRSPEQMVQYLKDDRDGH 3633
            +    KKPLSDDNARRIIK KA+YLSVLRRNQG  AQTPKWI+R+PEQMVQYL+DDR+GH
Sbjct: 58   RSKNAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGH 117

Query: 3632 LYGKHVVAAIRIVRNLATKAQGSYNMREVMASFVTKLTFKEMCIVLKEQKGWRQVQDFFS 3453
            LYGKHVVAAIR VR+L+ K +G YNMR  MASFV KLTF+EMCIVLKEQKGWRQV+D F 
Sbjct: 118  LYGKHVVAAIRHVRSLSQKTEGEYNMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVFD 177

Query: 3452 WMKLQLQYQPSVVVYTIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCAYARW 3273
            WMKLQL Y+PSV+VYTIVLR YGQVGKIKLAE+TFLEMLE G EPDEVACGTMLC YARW
Sbjct: 178  WMKLQLSYRPSVIVYTIVLRAYGQVGKIKLAEETFLEMLEVGLEPDEVACGTMLCTYARW 237

Query: 3272 GRHKAMLSFYSAVQDRRIVPSIAVFNFMISSLQKKSHHKKVIFLWRHMTDAGVVPNHFTY 3093
            G HK MLSFYSAV+DR IVP IAVFNFM+SSLQKK  H KV  LW  M + GV  + FTY
Sbjct: 238  GHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFSDFTY 297

Query: 3092 TIVICSYAKEGLLKNAFEVFNDMRKSQFIPEEVTYSLLINLSAKQGNWDKSLNLYEEMRC 2913
            T+VI S  KEG  + AF+VFN+M+   FIPEEVTY+LLI+LS K+ N D+ L LY++MR 
Sbjct: 298  TVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKRENSDEVLRLYKDMRD 357

Query: 2912 QGIIPSNYTCATLLMLHYRNRDYQKALQLLSEMDKIKIAADEVIYGIIIRIYGKLGLYDD 2733
            + I+PSNYTC++LL L Y+N DY KAL L SEM+  K+  DEVIYG++IRIYGKLGLY+D
Sbjct: 358  KDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGLYED 417

Query: 2732 AQKTFEDIEKLGLLNDEKTYVAMAQVHLNAGSIEKALSVLELMRSRNIWYSRFAYIVLLQ 2553
            A KTFE++E+LGLL DEK+Y+AMAQVHLN+ + EKAL ++ELM+SRNIW SRFAYIV LQ
Sbjct: 418  AHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNIWLSRFAYIVSLQ 477

Query: 2552 CYSMKEDVASAEVTFQALSKTGLPDAASCKDMLNLYARLGLLEKANAFIVRMRKDLVQFD 2373
            CY MKED+ SAE TFQALSKTGLPDA SC  +LNLY +L L+ KA  FI  +RKD V FD
Sbjct: 478  CYVMKEDIRSAESTFQALSKTGLPDARSCIYILNLYLKLDLVNKAKDFIAHIRKDGVVFD 537

Query: 2372 EELYMSVMKLYCNEGMLKDAEELTEEMRKTASFKDSKFLQTLLMAKHGESRIIVNADESL 2193
            EELY  V+++YC EG+ +DAE L E M+K   F D+KF++T           +   D   
Sbjct: 538  EELYKLVLRVYCKEGLSEDAEILIELMKKDELFVDNKFMETF--------SFMFKLD--- 586

Query: 2192 AASKQPETLVLAKADNVGNAVNQPNIMALKMLLSLYMENGDDGKTNHIVKILLQSASGLS 2013
               K   T+V           +QP+ +AL M+L LY+ NGD  K N I+K ++    G++
Sbjct: 587  GGEKNESTIV---------GYDQPDHIALDMILRLYLANGDVSKRNKILKFII-GKGGVT 636

Query: 2012 EASQLIRKFVSEGNVAKAQSIHELVIKLGDRPTDAASASLITSYGRLQQLKRAHEVFSSV 1833
              SQL+   + EG+  KA ++ + ++KL  R  DA  ASLI+ YG+ +++ +A EV ++V
Sbjct: 637  VVSQLVANLIREGDSLKAGTLTKELLKLDCRLDDAIIASLISLYGKERKINQAAEVLAAV 696

Query: 1832 AEFLTSSKPIYKSMIDAYLKCGKPDEALMLYNEMIKKGIKVDAVTISVLVNAMTSYGKQQ 1653
            A   TS+  I+ SMIDAY+KC K +EA  LY E+I+KG  + AV +S +VN +T  GK +
Sbjct: 697  ANSCTSTL-IFGSMIDAYIKCDKAEEASTLYKELIEKGYDLGAVAVSRIVNTLTVGGKHR 755

Query: 1652 ESENIIRKSFQEKHELDTVAYNTFIKAMLEAGKLNFASRIYEQMLTSEVVPSIQTYSTMI 1473
             +EN++R S     ELDTVA+NTFIKAMLE GKL+FASRIYE M+   +VPSIQTY+TMI
Sbjct: 756  VAENVVRASLNCGLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMI 815

Query: 1472 SVYGRGHKLTKAIEMFNLVSSSDVSMDEKAYTTMISYYGKAGRSQEASLLFIKMREEGIR 1293
            SVYGRG KL KA+EMFN   SS +S DEKAYT +IS YGKAG++ EASLLF +M EEG++
Sbjct: 816  SVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVK 875

Query: 1292 PGKVTYNIMMNMYASVALDDEAEKLLQAMEKDGCSPDSFTYQALIRAYTVSQKFLKAEET 1113
            PG V+YNIM+N+YA+  L +E E LL+AME+D   PDSFTY +LIRAYT S K+ +AE+ 
Sbjct: 876  PGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKI 935

Query: 1112 IIAMQKKGLCPSIAHFGYLLSAYAKHGLMKDAERIYGELTRAALFPDLECHCSMLRGYMD 933
            I +MQ+KG+  + AH+  LLSA AK G+++ AER+Y EL  A L PD+ C+ +++RGY+D
Sbjct: 936  INSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYLD 995

Query: 932  YGHVEEAISLFEHVSESVQPDRYLLSSAVHLYRFAGDELKASSILDYMNRLGIPFLNTLE 753
            YG+V E I  FE   +    DR+++S+AVH Y+  G E +A +ILD M  LG+ FL  L+
Sbjct: 996  YGYVREGIKFFESTCK-YAGDRFIMSAAVHFYKAEGKEDEALNILDSMKTLGLSFLKDLQ 1054

Query: 752  IGSKM 738
            IG K+
Sbjct: 1055 IGLKL 1059


>ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540790|gb|EEF42350.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1040

 Score = 1163 bits (3009), Expect = 0.0
 Identities = 600/1075 (55%), Positives = 774/1075 (72%), Gaps = 11/1075 (1%)
 Frame = -3

Query: 3923 TTTLHPIPSKQPKNL------TSYISCNSITPDPWTLSDGNNSYK-----KQKKKPLSDD 3777
            +T L P+P+++PK+       +     +SI  DPW+LSDGN+  K     +  KKPLSDD
Sbjct: 8    STFLPPLPNRKPKSQKASKANSKMTIKSSIHSDPWSLSDGNDISKPKPRSRNPKKPLSDD 67

Query: 3776 NARRIIKGKAKYLSVLRRNQGSHAQTPKWIQRSPEQMVQYLKDDRDGHLYGKHVVAAIRI 3597
            NARRIIK KA+YLS+LR+++G H QTPKWI+R+PEQMV+YL+DDR+GHLYGKHVVAAI+ 
Sbjct: 68   NARRIIKAKAQYLSLLRKHKGPHVQTPKWIKRTPEQMVKYLEDDRNGHLYGKHVVAAIKT 127

Query: 3596 VRNLATKAQGSYNMREVMASFVTKLTFKEMCIVLKEQKGWRQVQDFFSWMKLQLQYQPSV 3417
            VR LA K +   N+R VM+ FV KL+F+EMC+VLKEQKGWR+ +DFF WMKLQ+ Y PSV
Sbjct: 128  VRGLAGKREEERNVRLVMSGFVGKLSFREMCVVLKEQKGWREARDFFYWMKLQICYHPSV 187

Query: 3416 VVYTIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCAYARWGRHKAMLSFYSA 3237
            +VYTIVLR YGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLC+YARWGRHKAM SFYSA
Sbjct: 188  IVYTIVLRTYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCSYARWGRHKAMFSFYSA 247

Query: 3236 VQDRRIVPSIAVFNFMISSLQKKSHHKKVIFLWRHMTDAGVVPNHFTYTIVICSYAKEGL 3057
            +++R I  S++V+NFM+SSLQKKS H +VI LWR M D  V PN FTYT+VI S  KEGL
Sbjct: 248  IRERGITLSVSVYNFMLSSLQKKSLHGRVIELWRQMVDKAVAPNTFTYTVVISSLVKEGL 307

Query: 3056 LKNAFEVFNDMRKSQFIPEEVTYSLLINLSAKQGNWDKSLNLYEEMRCQGIIPSNYTCAT 2877
             + AF+VFN+M+ +  +PEEVTYSLLI ++ K+GNWD++  LYE++   G++PSN+TCA+
Sbjct: 308  HEEAFKVFNEMKNTGHVPEEVTYSLLITVNTKKGNWDEAGRLYEDLISHGLVPSNFTCAS 367

Query: 2876 LLMLHYRNRDYQKALQLLSEMDKIKIAADEVIYGIIIRIYGKLGLYDDAQKTFEDIEKLG 2697
            LL ++Y+N D+ KAL L  EM   KIAADEVIYG++IRIYGKLGLYDDAQKTFE+ E+LG
Sbjct: 368  LLTMYYKNGDFSKALSLFMEMQSKKIAADEVIYGLLIRIYGKLGLYDDAQKTFEETEQLG 427

Query: 2696 LLNDEKTYVAMAQVHLNAGSIEKALSVLELMRSRNIWYSRFAYIVLLQCYSMKEDVASAE 2517
            LL+DEKTY+AMAQVHLN+G+ EKALSV+E+M+SRNIW SRFAYIVLLQCY MKED+  AE
Sbjct: 428  LLSDEKTYLAMAQVHLNSGNSEKALSVIEVMKSRNIWLSRFAYIVLLQCYVMKEDLDCAE 487

Query: 2516 VTFQALSKTGLPDAASCKDMLNLYARLGLLEKANAFIVRMRKDLVQFDEELYMSVMKLYC 2337
             T+QALSKTGLPDA SC DMLNLY RL L EKA  F +++R                   
Sbjct: 488  ATYQALSKTGLPDAGSCNDMLNLYLRLDLTEKAKTFFIQIR------------------- 528

Query: 2336 NEGMLKDAEELTEEMRKTASFKDSKFLQTLLMAKHGESRIIVNADESLAASKQPETLVLA 2157
                 KD  +  EE+ KT          T ++ K G    +    E +  ++        
Sbjct: 529  -----KDQVDFDEELYKTV---------TKVLCKEGMLSDVEQLTEEVGTNE-------- 566

Query: 2156 KADNVGNAVNQPNIMALKMLLSLYMENGDDGKTNHIVKILLQSASGLSEASQLIRKFVSE 1977
                           +LK               + I++ LL +  GLS  +QL+   + E
Sbjct: 567  ---------------SLK---------------DKIIRSLLVTYGGLSTVNQLVTNSIRE 596

Query: 1976 GNVAKAQSIHELVIKLGDRPTDAASASLITSYGRLQQLKRAHEVFSSVAEFLTSSKPIYK 1797
            G+V KA+ I+  V  LG R  +   ASLI+ Y + Q+LK+A EVF++VA+     KPI  
Sbjct: 597  GDVCKAEMINAQVTMLGGRLENDVIASLISLYAKQQKLKQAQEVFAAVADSPVCGKPIVN 656

Query: 1796 SMIDAYLKCGKPDEALMLYNEMIKKGIKVDAVTISVLVNAMTSYGKQQESENIIRKSFQE 1617
            SMIDAY KCGK ++A  LY E+  +G+ + AV +S++V A+++ GK QE+ENI+RKS +E
Sbjct: 657  SMIDAYAKCGKSEDAYSLYREVTDRGLNLGAVGVSIIVKALSNRGKHQEAENIVRKSIRE 716

Query: 1616 KHELDTVAYNTFIKAMLEAGKLNFASRIYEQMLTSEVVPSIQTYSTMISVYGRGHKLTKA 1437
              +LDTVAYN FIKAMLEAG+L+FA+ IYE ML+  V PSIQTY+TMISVYGRG KL KA
Sbjct: 717  NMDLDTVAYNIFIKAMLEAGRLHFAASIYEHMLSLGVTPSIQTYNTMISVYGRGEKLDKA 776

Query: 1436 IEMFNLVSSSDVSMDEKAYTTMISYYGKAGRSQEASLLFIKMREEGIRPGKVTYNIMMNM 1257
            +E+FN   SS VS+DEKAY  M+SYYGKAG+  EASLLF KM+EEGI+PGKV+YNIM+ +
Sbjct: 777  VEIFNTACSSGVSLDEKAYMNMVSYYGKAGKRNEASLLFTKMQEEGIKPGKVSYNIMIKV 836

Query: 1256 YASVALDDEAEKLLQAMEKDGCSPDSFTYQALIRAYTVSQKFLKAEETIIAMQKKGLCPS 1077
            +A   L  EA++L  AM++DG  PDSFTY +L++AYT S K+ +AEETI  M KKG+ PS
Sbjct: 837  FAIAGLYHEAKELFHAMQRDGWPPDSFTYLSLVQAYTESLKYSEAEETIDGMPKKGVLPS 896

Query: 1076 IAHFGYLLSAYAKHGLMKDAERIYGELTRAALFPDLECHCSMLRGYMDYGHVEEAISLFE 897
             +HF +LLSAYAK GLM +AER+Y +L  + L PDL C+ +MLRGY+DYG VE+ I+ FE
Sbjct: 897  CSHFNHLLSAYAKAGLMVEAERVYKKLLTSGLSPDLACYRAMLRGYLDYGQVEKGINFFE 956

Query: 896  HVSESVQPDRYLLSSAVHLYRFAGDELKASSILDYMNRLGIPFLNTLEIGSKMIA 732
             + +  + DR+++S+AVHLY+FAG E  A  +L  MN L I FL+ L++GSK+++
Sbjct: 957  QIKKYAESDRFIMSAAVHLYKFAGKEPMAEVLLGSMNNLKISFLHNLQVGSKIVS 1011



 Score = 90.1 bits (222), Expect = 4e-15
 Identities = 98/449 (21%), Positives = 180/449 (40%), Gaps = 42/449 (9%)
 Frame = -3

Query: 3413 VYTIVLRIYGQVGKIKLAEQTFLEMLEAGCEPDEVACG-----TMLCAYARWGRHKAMLS 3249
            V   ++ +Y +  K+K A++ F  +       D   CG     +M+ AYA+ G+ +   S
Sbjct: 620  VIASLISLYAKQQKLKQAQEVFAAVA------DSPVCGKPIVNSMIDAYAKCGKSEDAYS 673

Query: 3248 FYSAVQDRRIVPSIAVFNFMISSLQKKSHHKKV--------------------IFL---- 3141
             Y  V DR +       + ++ +L  +  H++                     IF+    
Sbjct: 674  LYREVTDRGLNLGAVGVSIIVKALSNRGKHQEAENIVRKSIRENMDLDTVAYNIFIKAML 733

Query: 3140 -----------WRHMTDAGVVPNHFTYTIVICSYAKEGLLKNAFEVFNDMRKSQFIPEEV 2994
                       + HM   GV P+  TY  +I  Y +   L  A E+FN    S    +E 
Sbjct: 734  EAGRLHFAASIYEHMLSLGVTPSIQTYNTMISVYGRGEKLDKAVEIFNTACSSGVSLDEK 793

Query: 2993 TYSLLINLSAKQGNWDKSLNLYEEMRCQGIIPSNYTCATLLMLHYRNRDYQKALQLLSEM 2814
             Y  +++   K G  +++  L+ +M+ +GI P                            
Sbjct: 794  AYMNMVSYYGKAGKRNEASLLFTKMQEEGIKPG--------------------------- 826

Query: 2813 DKIKIAADEVIYGIIIRIYGKLGLYDDAQKTFEDIEKLGLLNDEKTYVAMAQVHLNAGSI 2634
                    +V Y I+I+++   GLY +A++ F  +++ G   D  TY+++ Q +  +   
Sbjct: 827  --------KVSYNIMIKVFAIAGLYHEAKELFHAMQRDGWPPDSFTYLSLVQAYTESLKY 878

Query: 2633 EKALSVLELMRSRNIWYSRFAYIVLLQCYSMKEDVASAEVTFQALSKTGL-PDAASCKDM 2457
             +A   ++ M  + +  S   +  LL  Y+    +  AE  ++ L  +GL PD A  + M
Sbjct: 879  SEAEETIDGMPKKGVLPSCSHFNHLLSAYAKAGLMVEAERVYKKLLTSGLSPDLACYRAM 938

Query: 2456 LNLYARLGLLEKANAFIVRMRKDLVQFDEELYMSVMKLYCNEGMLKDAEELTEEMRK-TA 2280
            L  Y   G +EK   F  +++K   + D  +  + + LY   G    AE L   M     
Sbjct: 939  LRGYLDYGQVEKGINFFEQIKK-YAESDRFIMSAAVHLYKFAGKEPMAEVLLGSMNNLKI 997

Query: 2279 SFKDSKFLQTLLMAKHGESRIIVNADESL 2193
            SF  +  + + +++K+  S+I V     L
Sbjct: 998  SFLHNLQVGSKIVSKYA-SKIAVQCTSQL 1025