BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001724
         (587 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD18921.1| RNA-binding protein precursor [Persea americana]      219   3e-55
emb|CBI34828.3| unnamed protein product [Vitis vinifera]              218   6e-55
ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   218   6e-55
ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ri...   207   1e-51
gb|ABF60862.1| GRSF [Lilium longiflorum]                              207   1e-51

>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
          Length = 300

 Score =  219 bits (557), Expect = 3e-55
 Identities = 104/124 (83%), Positives = 119/124 (95%)
 Frame = -1

Query: 587 KAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFS 408
           KA++MFNRYDINGR LTVNKAAP+G+R +R PR+FEP+FR+YVGNLPWQVDDARLEQVFS
Sbjct: 177 KAVEMFNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFS 236

Query: 407 EYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPR 228
           E+GKV +ARVVYDRE+GRSRGFGF+TMSTQTE+DDAIAALDGQSLDGRAI+VNVAE+RPR
Sbjct: 237 EHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPR 296

Query: 227 RNSF 216
           R SF
Sbjct: 297 RASF 300



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 35/82 (42%), Positives = 53/82 (64%)
 Frame = -1

Query: 470 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 291
           +++VGNLP+ VD   L ++F + G V  A V+Y+RE+ +SRGFGF+TMST  E + A+  
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 181

Query: 290 LDGQSLDGRAIKVNVAEERPRR 225
            +   ++GR + VN A  R  R
Sbjct: 182 FNRYDINGRLLTVNKAAPRGAR 203


>emb|CBI34828.3| unnamed protein product [Vitis vinifera]
          Length = 272

 Score =  218 bits (555), Expect = 6e-55
 Identities = 103/124 (83%), Positives = 119/124 (95%)
 Frame = -1

Query: 587 KAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFS 408
           KA++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQVFS
Sbjct: 149 KAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFS 208

Query: 407 EYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPR 228
           E+GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAALDGQSLDGRAI+VNVAEERPR
Sbjct: 209 EHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPR 268

Query: 227 RNSF 216
           R S+
Sbjct: 269 RGSY 272



 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 38/82 (46%), Positives = 54/82 (65%)
 Frame = -1

Query: 470 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 291
           +++VGNLP+ +D  +L Q+F E G V  A V+Y+RE+ +SRGFGFITMST  E + A+  
Sbjct: 94  KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 153

Query: 290 LDGQSLDGRAIKVNVAEERPRR 225
            +   L+GR + VN A  R  R
Sbjct: 154 FNRYDLNGRFLTVNKAAPRGSR 175


>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
           vinifera]
          Length = 312

 Score =  218 bits (555), Expect = 6e-55
 Identities = 103/124 (83%), Positives = 119/124 (95%)
 Frame = -1

Query: 587 KAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFS 408
           KA++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQVFS
Sbjct: 189 KAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFS 248

Query: 407 EYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPR 228
           E+GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAALDGQSLDGRAI+VNVAEERPR
Sbjct: 249 EHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPR 308

Query: 227 RNSF 216
           R S+
Sbjct: 309 RGSY 312



 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 38/82 (46%), Positives = 54/82 (65%)
 Frame = -1

Query: 470 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 291
           +++VGNLP+ +D  +L Q+F E G V  A V+Y+RE+ +SRGFGFITMST  E + A+  
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEM 193

Query: 290 LDGQSLDGRAIKVNVAEERPRR 225
            +   L+GR + VN A  R  R
Sbjct: 194 FNRYDLNGRFLTVNKAAPRGSR 215


>ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223550401|gb|EEF51888.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 319

 Score =  207 bits (527), Expect = 1e-51
 Identities = 96/122 (78%), Positives = 116/122 (95%)
 Frame = -1

Query: 587 KAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFS 408
           KA++MF+R+D++GR LTVNKAAP+GSRPER PR FEP +RIYVGNLPW VD+ARLEQ+FS
Sbjct: 197 KAVEMFHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFS 256

Query: 407 EYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPR 228
           E+GKV DARVVYDR++GRSRGFGF+TMST+TE++DAIAALDG+SLDGRAI+VNVAE+RPR
Sbjct: 257 EHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPR 316

Query: 227 RN 222
           RN
Sbjct: 317 RN 318



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/98 (41%), Positives = 56/98 (57%)
 Frame = -1

Query: 518 KGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFG 339
           +GS PE          +I+VGNLP+ VD  +L  +F + G V  A V+Y+RE+  SRGFG
Sbjct: 126 EGSEPEEAFEEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFG 185

Query: 338 FITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 225
           F++MST  E + A+       LDGR + VN A  R  R
Sbjct: 186 FVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAPRGSR 223


>gb|ABF60862.1| GRSF [Lilium longiflorum]
          Length = 207

 Score =  207 bits (527), Expect = 1e-51
 Identities = 98/124 (79%), Positives = 117/124 (94%)
 Frame = -1

Query: 587 KAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQVFS 408
           +A++M +RYDINGRNLTVNKAAP+GSRPER PR  +PS R+YVGNLPWQVDD+RLEQ+FS
Sbjct: 85  RAVEMLHRYDINGRNLTVNKAAPRGSRPER-PRESDPSLRVYVGNLPWQVDDSRLEQLFS 143

Query: 407 EYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPR 228
           E+GKV DARVVYDR+SGRSRGFGF+T++T+ EVDDAIAALDGQSL+GRA++VNVAEERPR
Sbjct: 144 EHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRVNVAEERPR 203

Query: 227 RNSF 216
           R+SF
Sbjct: 204 RSSF 207



 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
 Frame = -1

Query: 515 GSRPERTPR---SFEPSFRIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRG 345
           G RP+R  R   S     +++VGN+P+  D  +L  +F + G V  A V+Y+RE+ +SRG
Sbjct: 13  GRRPQRRSRRTPSRRRQAKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRG 71

Query: 344 FGFITMSTQTEVDDAIAALDGQSLDGRAIKVNVAEERPRR 225
           FGF+TMST  E + A+  L    ++GR + VN A  R  R
Sbjct: 72  FGFVTMSTVEEAERAVEMLHRYDINGRNLTVNKAAPRGSR 111