BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00001604
         (789 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucum...   491   e-137
ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucum...   489   e-136
gb|ADE77625.1| unknown [Picea sitchensis]                             486   e-135
ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vini...   486   e-135
ref|XP_003551358.1| PREDICTED: THO complex subunit 3-like [Glyci...   484   e-135

>ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]
          Length = 314

 Score =  491 bits (1264), Expect = e-137
 Identities = 234/261 (89%), Positives = 246/261 (94%)
 Frame = +3

Query: 6   MEETRSVPNFKNLYSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARISHIEPHGHSKVK 185
           MEE  S   FKNL+SREYQGHKKKVHSVAWNCTG KLASGSVDQTAR+ HIEPHGH KVK
Sbjct: 1   MEE--SAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVK 58

Query: 186 DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKP 365
           D+ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQ ELSGENINITYKP
Sbjct: 59  DVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKP 118

Query: 366 DGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTGEIFFLTTGNGTVEVLAY 545
           DGTHIAVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWN TGE+FFLTTGNGTVEVLAY
Sbjct: 119 DGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAY 178

Query: 546 PSLKALHTLMAHTAGCYCIAIDPTGSYFAVGSADSLVSLWDMSEMLCVRTFTKLEWPVRT 725
           PSL+ + TLMAHTAGCYCIAIDP G YFAVGSADSLVSLWD+S+MLCVRTFTKLEWPVRT
Sbjct: 179 PSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRT 238

Query: 726 ISFNSTGEYIASASEDLFIDV 788
           ISFN TGEYIASASEDLFID+
Sbjct: 239 ISFNHTGEYIASASEDLFIDI 259


>ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]
          Length = 314

 Score =  489 bits (1259), Expect = e-136
 Identities = 233/261 (89%), Positives = 245/261 (93%)
 Frame = +3

Query: 6   MEETRSVPNFKNLYSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARISHIEPHGHSKVK 185
           MEE  S   FKNL+SREYQGHKKKVHSVAWNCTG KLASGSVDQTAR+ HIEPHGH KVK
Sbjct: 1   MEE--SAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVK 58

Query: 186 DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKP 365
           D+ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQ ELSGENINITYKP
Sbjct: 59  DVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKP 118

Query: 366 DGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTGEIFFLTTGNGTVEVLAY 545
           DGTHIAVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWN TGE+FFLTTGNGTVEVLAY
Sbjct: 119 DGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAY 178

Query: 546 PSLKALHTLMAHTAGCYCIAIDPTGSYFAVGSADSLVSLWDMSEMLCVRTFTKLEWPVRT 725
           PSL+ + TLMAHTAGCYCIAIDP G YFAVGSADSLVSLWD+S+MLCVRTFTKL WPVRT
Sbjct: 179 PSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLRWPVRT 238

Query: 726 ISFNSTGEYIASASEDLFIDV 788
           ISFN TGEYIASASEDLFID+
Sbjct: 239 ISFNHTGEYIASASEDLFIDI 259


>gb|ADE77625.1| unknown [Picea sitchensis]
          Length = 327

 Score =  486 bits (1252), Expect = e-135
 Identities = 227/261 (86%), Positives = 248/261 (95%)
 Frame = +3

Query: 6   MEETRSVPNFKNLYSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARISHIEPHGHSKVK 185
           + E  S PNFKNL++REY  HKKKVHSVAWNCTGTKLASGSVDQTAR+ +IEPHGHSK K
Sbjct: 12  LPERDSAPNFKNLHTREYAAHKKKVHSVAWNCTGTKLASGSVDQTARVWNIEPHGHSKAK 71

Query: 186 DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKP 365
           D+ELKGH DSVDQLCWDPKHA+L+ATASGD+TVRLWDARSGKCSQQVELSGENINIT+KP
Sbjct: 72  DLELKGHADSVDQLCWDPKHAELLATASGDRTVRLWDARSGKCSQQVELSGENINITFKP 131

Query: 366 DGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTGEIFFLTTGNGTVEVLAY 545
           DGTHIAVGNRDDELTI+DVRKFKP+HKRKF+YEVNEIAWNTTGE+FFLTTGNGTVEVL+Y
Sbjct: 132 DGTHIAVGNRDDELTIIDVRKFKPLHKRKFSYEVNEIAWNTTGELFFLTTGNGTVEVLSY 191

Query: 546 PSLKALHTLMAHTAGCYCIAIDPTGSYFAVGSADSLVSLWDMSEMLCVRTFTKLEWPVRT 725
           PSL+ALHTL+AHTAGCYCIAIDP G YFAVGSAD+LVSLWD+SEMLCVRTFTKLEWPVRT
Sbjct: 192 PSLQALHTLVAHTAGCYCIAIDPIGRYFAVGSADALVSLWDLSEMLCVRTFTKLEWPVRT 251

Query: 726 ISFNSTGEYIASASEDLFIDV 788
           ISFN  G+YIASASEDLFID+
Sbjct: 252 ISFNHDGQYIASASEDLFIDI 272


>ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera]
           gi|147789347|emb|CAN62349.1| hypothetical protein
           VITISV_004943 [Vitis vinifera]
           gi|296089987|emb|CBI39806.3| unnamed protein product
           [Vitis vinifera]
          Length = 313

 Score =  486 bits (1250), Expect = e-135
 Identities = 237/261 (90%), Positives = 247/261 (94%)
 Frame = +3

Query: 6   MEETRSVPNFKNLYSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARISHIEPHGHSKVK 185
           MEET  +P FKNL+SREYQGHKKKVHSVAWNCTGTKLASGSVDQTARI  IE HGH KVK
Sbjct: 1   MEET--IP-FKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVK 57

Query: 186 DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKP 365
           DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC+QQ ELSGENINITYKP
Sbjct: 58  DIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKP 117

Query: 366 DGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTGEIFFLTTGNGTVEVLAY 545
           DGTHIAVGNRDDELTILDVRKFKPIH+RKF+YEVNEIAWN TGE+FFLTTGNGTVEVLAY
Sbjct: 118 DGTHIAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAY 177

Query: 546 PSLKALHTLMAHTAGCYCIAIDPTGSYFAVGSADSLVSLWDMSEMLCVRTFTKLEWPVRT 725
           P+L+ L TLMAHTAGCYCIAIDP G YFAVGSADSLVSLWD+SEMLCVRTFTKLEWPVRT
Sbjct: 178 PALRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 237

Query: 726 ISFNSTGEYIASASEDLFIDV 788
           ISFN TGEYIASASEDLFID+
Sbjct: 238 ISFNHTGEYIASASEDLFIDI 258


>ref|XP_003551358.1| PREDICTED: THO complex subunit 3-like [Glycine max]
          Length = 313

 Score =  484 bits (1246), Expect = e-135
 Identities = 229/252 (90%), Positives = 240/252 (95%)
 Frame = +3

Query: 33  FKNLYSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARISHIEPHGHSKVKDIELKGHTD 212
           FKNL++REY GHKKKVHSVAWNC GTKLASGSVDQTARI HIEPHGH KVKDIELKGHTD
Sbjct: 7   FKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTD 66

Query: 213 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGTHIAVGN 392
           SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ ELSGENINITYKPDGTH+AVGN
Sbjct: 67  SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGN 126

Query: 393 RDDELTILDVRKFKPIHKRKFNYEVNEIAWNTTGEIFFLTTGNGTVEVLAYPSLKALHTL 572
           RDDELTILDVRKFKPIH+RKFNYEVNEIAWN TGE+FFLTTGNGTVEVL+YPSL+ L TL
Sbjct: 127 RDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTL 186

Query: 573 MAHTAGCYCIAIDPTGSYFAVGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEY 752
           MAHTAGCYCIAIDP G YFAVGSADSLVSLWD+SEMLCVRTFTKLEWPVRTI FN TG++
Sbjct: 187 MAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFNYTGDF 246

Query: 753 IASASEDLFIDV 788
           IASASEDLFID+
Sbjct: 247 IASASEDLFIDI 258