BLASTX nr result
ID: Coptis25_contig00001510
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00001510
(1143 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycin... 130 5e-39
ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23... 128 2e-38
gb|ABD96960.1| hypothetical protein [Cleome spinosa] 126 3e-38
ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsi... 125 6e-38
ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabido... 125 6e-38
>ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 130 bits (328), Expect(2) = 5e-39
Identities = 65/102 (63%), Positives = 75/102 (73%)
Frame = -2
Query: 404 GNNREGTIQQILDMGGGTWDRDIVECALRAAYNSPKRAIEYLFSGIPEQADVPPVIRPPA 225
G+N EGTIQQILDMGGG+WDRD V ALRAAYN+P+RA+EYL+SGIPEQA+ PPV R PA
Sbjct: 158 GSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPA 217
Query: 224 TRQTTDVXXXXXXXXXXXXXPIRGPNANPLDLFPRGLPNVDS 99
+ Q + P GPNANPLDLFP+GLPNV S
Sbjct: 218 SAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGS 259
Score = 57.8 bits (138), Expect(2) = 5e-39
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = -3
Query: 91 LVQPMLQELGKQNPNLMRLIQEHQADFLRL 2
++QPMLQELGKQNP+LMRLIQEHQ DFLRL
Sbjct: 289 ILQPMLQELGKQNPHLMRLIQEHQVDFLRL 318
>ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product
[Vitis vinifera]
Length = 397
Score = 128 bits (321), Expect(2) = 2e-38
Identities = 66/103 (64%), Positives = 75/103 (72%)
Frame = -2
Query: 404 GNNREGTIQQILDMGGGTWDRDIVECALRAAYNSPKRAIEYLFSGIPEQADVPPVIRPPA 225
GNN E IQQILDMGGGTWDRD V ALRAAYN+P+RA+EYL+SGIPEQA+VPPV R PA
Sbjct: 166 GNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPA 225
Query: 224 TRQTTDVXXXXXXXXXXXXXPIRGPNANPLDLFPRGLPNVDSN 96
+ Q + P GPNANPLDLFP+G+PNV SN
Sbjct: 226 SGQAAN---PPAQSQQPVPAPSSGPNANPLDLFPQGIPNVGSN 265
Score = 58.9 bits (141), Expect(2) = 2e-38
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = -3
Query: 91 LVQPMLQELGKQNPNLMRLIQEHQADFLRL 2
++QPMLQELGKQNP LMRLIQEHQADFLRL
Sbjct: 294 ILQPMLQELGKQNPQLMRLIQEHQADFLRL 323
>gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 126 bits (317), Expect(2) = 3e-38
Identities = 67/104 (64%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Frame = -2
Query: 404 GNNREGTIQQILDMGGGTWDRDIVECALRAAYNSPKRAIEYLFSGIPEQADVPPVIRPPA 225
G+N E IQQILDMGGG+WDRD V ALRAAYN+P+RA+EYL+SGIPEQA+VPPV RPPA
Sbjct: 202 GSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVTRPPA 261
Query: 224 T-RQTTDVXXXXXXXXXXXXXPIRGPNANPLDLFPRGLPNVDSN 96
+ Q T+ P GPNANPLDLFP+GLPNV SN
Sbjct: 262 SGGQPTN--PPAQSQQQPAVAPTSGPNANPLDLFPQGLPNVGSN 303
Score = 59.3 bits (142), Expect(2) = 3e-38
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = -3
Query: 91 LVQPMLQELGKQNPNLMRLIQEHQADFLRL 2
++QPMLQELGKQNP+LMRLIQEHQADFLRL
Sbjct: 331 ILQPMLQELGKQNPHLMRLIQEHQADFLRL 360
>ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName:
Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis
thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17
[Arabidopsis thaliana] gi|21360453|gb|AAM47342.1|
AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein
[Arabidopsis thaliana] gi|110735092|gb|ABG89116.1|
Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein
RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 125 bits (314), Expect(2) = 6e-38
Identities = 64/106 (60%), Positives = 76/106 (71%)
Frame = -2
Query: 413 LS*GNNREGTIQQILDMGGGTWDRDIVECALRAAYNSPKRAIEYLFSGIPEQADVPPVIR 234
L+ G+N E TIQQILDMGGGTWDR+ V ALRAA+N+P+RA+EYL++GIPEQA+VPPV R
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 240
Query: 233 PPATRQTTDVXXXXXXXXXXXXXPIRGPNANPLDLFPRGLPNVDSN 96
PPA+ P GPNANPLDLFP+GLPNV N
Sbjct: 241 PPAS--AGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGN 284
Score = 59.7 bits (143), Expect(2) = 6e-38
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = -3
Query: 91 LVQPMLQELGKQNPNLMRLIQEHQADFLRL 2
++QPMLQELGKQNPNLMRLIQ+HQADFLRL
Sbjct: 312 VLQPMLQELGKQNPNLMRLIQDHQADFLRL 341
>ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein
RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 125 bits (314), Expect(2) = 6e-38
Identities = 64/106 (60%), Positives = 76/106 (71%)
Frame = -2
Query: 413 LS*GNNREGTIQQILDMGGGTWDRDIVECALRAAYNSPKRAIEYLFSGIPEQADVPPVIR 234
L+ G+N E TIQQILDMGGGTWDR+ V ALRAA+N+P+RA+EYL++GIPEQA+VPPV R
Sbjct: 180 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 239
Query: 233 PPATRQTTDVXXXXXXXXXXXXXPIRGPNANPLDLFPRGLPNVDSN 96
PPA+ P GPNANPLDLFP+GLPNV N
Sbjct: 240 PPAS--AGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGN 283
Score = 59.7 bits (143), Expect(2) = 6e-38
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = -3
Query: 91 LVQPMLQELGKQNPNLMRLIQEHQADFLRL 2
++QPMLQELGKQNPNLMRLIQ+HQADFLRL
Sbjct: 311 VLQPMLQELGKQNPNLMRLIQDHQADFLRL 340