BLASTX nr result

ID: Coptis25_contig00000982 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000982
         (855 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23546.3| unnamed protein product [Vitis vinifera]               78   3e-12
emb|CBI18711.3| unnamed protein product [Vitis vinifera]               76   1e-11
ref|XP_002303485.1| predicted protein [Populus trichocarpa] gi|2...    75   2e-11
ref|NP_568757.2| protein SWITCH1 (protein DYAD) [Arabidopsis tha...    74   5e-11
gb|AAL13233.1| SWITCH1 splice variant S [Arabidopsis thaliana]         74   5e-11

>emb|CBI23546.3| unnamed protein product [Vitis vinifera]
          Length = 141

 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 45/55 (81%)
 Frame = -3

Query: 853 WLESADLLSVRKEGGVEETYFTPLLGWKAGDYPSQDTNCAWELKLLKEEMSNIKR 689
           WLE+ADL+S+R+E GV++ Y+TP LGWK GD P+QD  CA ELK LK+EM+ +KR
Sbjct: 87  WLENADLVSIRREAGVQDPYWTPPLGWKPGDSPTQDPVCAKELKRLKQEMAQMKR 141


>emb|CBI18711.3| unnamed protein product [Vitis vinifera]
          Length = 362

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 34/55 (61%), Positives = 44/55 (80%)
 Frame = -3

Query: 853 WLESADLLSVRKEGGVEETYFTPLLGWKAGDYPSQDTNCAWELKLLKEEMSNIKR 689
           WLE+ADL+S+R+E GV++ Y+TP LGWK GD P+QD  CA ELK LK EM+ +KR
Sbjct: 308 WLENADLVSIRREAGVQDPYWTPPLGWKPGDSPTQDPVCAKELKRLKIEMAQMKR 362


>ref|XP_002303485.1| predicted protein [Populus trichocarpa] gi|222840917|gb|EEE78464.1|
           predicted protein [Populus trichocarpa]
          Length = 830

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 853 WLESADLLSVRKEGGVEETYFTPLLGWKAGDYPSQDTNCAWELKLLKEEMSNIKRDVQA 677
           WLE ADL+ +RKE GV++ Y+TP  GWK GD PSQD  CA E+K L+EE++ IK +++A
Sbjct: 377 WLEKADLVDIRKEAGVQDPYWTPPPGWKPGDNPSQDPVCAREIKELREEIAKIKGEMEA 435


>ref|NP_568757.2| protein SWITCH1 (protein DYAD) [Arabidopsis thaliana]
           gi|334302786|sp|Q9FGN8.2|DYAD_ARATH RecName:
           Full=Protein DYAD; AltName: Full=Protein SWITCH 1
           gi|332008684|gb|AED96067.1| protein SWITCH1 (protein
           DYAD) [Arabidopsis thaliana]
          Length = 639

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 30/58 (51%), Positives = 47/58 (81%)
 Frame = -3

Query: 853 WLESADLLSVRKEGGVEETYFTPLLGWKAGDYPSQDTNCAWELKLLKEEMSNIKRDVQ 680
           WLES+DL+ +RKE GV++ Y+TP  GWK GD PSQD  CA E++ ++EE++++KR+++
Sbjct: 374 WLESSDLIHIRKEAGVKDPYWTPPPGWKLGDNPSQDPVCAGEIRDIREELASLKRELK 431


>gb|AAL13233.1| SWITCH1 splice variant S [Arabidopsis thaliana]
          Length = 578

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 30/58 (51%), Positives = 47/58 (81%)
 Frame = -3

Query: 853 WLESADLLSVRKEGGVEETYFTPLLGWKAGDYPSQDTNCAWELKLLKEEMSNIKRDVQ 680
           WLES+DL+ +RKE GV++ Y+TP  GWK GD PSQD  CA E++ ++EE++++KR+++
Sbjct: 313 WLESSDLIHIRKEAGVKDPYWTPPPGWKLGDNPSQDPVCAGEIRDIREELASLKRELK 370


Top