BLASTX nr result
ID: Coptis25_contig00000931
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000931
(1473 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003613697.1| Ran guanine nucleotide release factor [Medic... 245 2e-65
ref|XP_003518721.1| PREDICTED: ran guanine nucleotide release fa... 238 1e-62
ref|XP_004135179.1| PREDICTED: probable ran guanine nucleotide r... 230 6e-62
ref|XP_002524187.1| Nuclear import protein mog1, putative [Ricin... 231 7e-62
ref|NP_001241181.1| uncharacterized protein LOC100786093 [Glycin... 236 7e-62
>ref|XP_003613697.1| Ran guanine nucleotide release factor [Medicago truncatula]
gi|355515032|gb|AES96655.1| Ran guanine nucleotide
release factor [Medicago truncatula]
Length = 402
Score = 245 bits (626), Expect(2) = 2e-65
Identities = 117/161 (72%), Positives = 140/161 (86%)
Frame = +2
Query: 644 EVYVDPSRDESLIVELLELKQEVQDSASVAWFFQDLAREQDAQGSIVVEQSGIVELDGLR 823
EV+ DPSRDESLIVELLE K ++ D S AWF QDLAREQDA+G++V+EQSG++E GL
Sbjct: 237 EVFADPSRDESLIVELLEFKPDIADDGSAAWFLQDLAREQDAEGTVVIEQSGVLEAPGLM 296
Query: 824 FRNMPAIMTTAVGQMSVSKGKQGREAQNVVKVYLANLRLKGVGTDVLITAYEPIVISPFS 1003
+ N+PA++TTAVGQM++SKG+QGREAQN+VKVYLANLR+KGV TDVLITAYEPIVI+PFS
Sbjct: 297 YNNIPAVVTTAVGQMAISKGRQGREAQNIVKVYLANLRVKGVDTDVLITAYEPIVINPFS 356
Query: 1004 ESARTAGAGLAVPAMQPGCMQMADVFKLAVSSFKVQDWNLF 1126
ESA T GAG+AVPA Q GCM M +VFKLA +SFKV DW+LF
Sbjct: 357 ESADTVGAGMAVPASQAGCMSMDEVFKLAATSFKVYDWSLF 397
Score = 32.0 bits (71), Expect(2) = 2e-65
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Frame = +1
Query: 457 RMSSD----RPLFGGAIWSTFPLRFQ 522
+MS D RPLFGG I STFP RFQ
Sbjct: 199 KMSQDVVYQRPLFGGKISSTFPNRFQ 224
>ref|XP_003518721.1| PREDICTED: ran guanine nucleotide release factor-like [Glycine max]
Length = 198
Score = 238 bits (608), Expect(2) = 1e-62
Identities = 115/161 (71%), Positives = 136/161 (84%)
Frame = +2
Query: 644 EVYVDPSRDESLIVELLELKQEVQDSASVAWFFQDLAREQDAQGSIVVEQSGIVELDGLR 823
EV+ DPS DESLI ELLE K +V D+ S AWF QDLA EQDA+GS+V+EQSG++E GL
Sbjct: 38 EVFADPSHDESLIFELLEFKPDVADNGSAAWFLQDLATEQDAEGSVVIEQSGVLEAPGLM 97
Query: 824 FRNMPAIMTTAVGQMSVSKGKQGREAQNVVKVYLANLRLKGVGTDVLITAYEPIVISPFS 1003
++NMPA++ TAVGQM++SKG+QGREAQN VKVYLANL LKGV TDVL+TAYEPIVI+PFS
Sbjct: 98 YKNMPAVVITAVGQMAISKGRQGREAQNFVKVYLANLHLKGVDTDVLVTAYEPIVINPFS 157
Query: 1004 ESARTAGAGLAVPAMQPGCMQMADVFKLAVSSFKVQDWNLF 1126
ESA T GAG+AVPA Q GCM M +VFKLAV+SF+V DW LF
Sbjct: 158 ESADTVGAGVAVPAAQAGCMPMEEVFKLAVTSFRVHDWGLF 198
Score = 29.3 bits (64), Expect(2) = 1e-62
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 475 PLFGGAIWSTFPLRFQ 522
PLFGG I STFP RFQ
Sbjct: 10 PLFGGKIASTFPHRFQ 25
>ref|XP_004135179.1| PREDICTED: probable ran guanine nucleotide release factor-like
[Cucumis sativus] gi|449478418|ref|XP_004155313.1|
PREDICTED: probable ran guanine nucleotide release
factor-like [Cucumis sativus]
Length = 202
Score = 230 bits (587), Expect(2) = 6e-62
Identities = 112/163 (68%), Positives = 137/163 (84%)
Frame = +2
Query: 644 EVYVDPSRDESLIVELLELKQEVQDSASVAWFFQDLAREQDAQGSIVVEQSGIVELDGLR 823
EV+VDPSRDESLI ELL+ K +V D+ S WF QDLA EQDA+GS+V+EQSG++E L
Sbjct: 38 EVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEAPELC 97
Query: 824 FRNMPAIMTTAVGQMSVSKGKQGREAQNVVKVYLANLRLKGVGTDVLITAYEPIVISPFS 1003
+ N+P++ TTAVGQM++SKG+QGREAQN+V+VYLANLRLKGVGTDVLI+AYEPIVI+P S
Sbjct: 98 YGNIPSVATTAVGQMAISKGRQGREAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLS 157
Query: 1004 ESARTAGAGLAVPAMQPGCMQMADVFKLAVSSFKVQDWNLFGS 1132
ESA + G+GLA PA G M M +VFKLAVSSFKV DW+LFG+
Sbjct: 158 ESASSVGSGLATPASHSGYMPMPEVFKLAVSSFKVCDWSLFGA 200
Score = 35.4 bits (80), Expect(2) = 6e-62
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 463 SSDRPLFGGAIWSTFPLRFQ 522
S++R LFGGAI STFPLRFQ
Sbjct: 6 STERALFGGAIVSTFPLRFQ 25
>ref|XP_002524187.1| Nuclear import protein mog1, putative [Ricinus communis]
gi|223536556|gb|EEF38202.1| Nuclear import protein mog1,
putative [Ricinus communis]
Length = 203
Score = 231 bits (588), Expect(2) = 7e-62
Identities = 108/163 (66%), Positives = 138/163 (84%)
Frame = +2
Query: 644 EVYVDPSRDESLIVELLELKQEVQDSASVAWFFQDLAREQDAQGSIVVEQSGIVELDGLR 823
EV+VDP+RDESLI ELL+ K ++ D+ S WF QDLA EQDA+G ++EQSG+VE GL
Sbjct: 38 EVFVDPARDESLIFELLDFKHDIGDNGSATWFLQDLANEQDAEGCTLIEQSGVVEAPGLL 97
Query: 824 FRNMPAIMTTAVGQMSVSKGKQGREAQNVVKVYLANLRLKGVGTDVLITAYEPIVISPFS 1003
+R+ P +++TAVGQM++SKG+QGREAQNVV+VYLAN+RLKGV +DVLITAYEP++I P S
Sbjct: 98 YRDNPTVVSTAVGQMNISKGRQGREAQNVVRVYLANIRLKGVSSDVLITAYEPVLIHPLS 157
Query: 1004 ESARTAGAGLAVPAMQPGCMQMADVFKLAVSSFKVQDWNLFGS 1132
E+ART GAG+A+PA Q G + M++VFKLAVS+FKV DWNLFGS
Sbjct: 158 ETARTVGAGMAIPAAQSGFLPMSEVFKLAVSTFKVNDWNLFGS 200
Score = 34.7 bits (78), Expect(2) = 7e-62
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1
Query: 466 SDRPLFGGAIWSTFPLRFQ 522
++RPLFGGAI ++FPLRFQ
Sbjct: 7 TERPLFGGAITTSFPLRFQ 25
>ref|NP_001241181.1| uncharacterized protein LOC100786093 [Glycine max]
gi|255642279|gb|ACU21404.1| unknown [Glycine max]
Length = 198
Score = 236 bits (602), Expect(2) = 7e-62
Identities = 113/161 (70%), Positives = 136/161 (84%)
Frame = +2
Query: 644 EVYVDPSRDESLIVELLELKQEVQDSASVAWFFQDLAREQDAQGSIVVEQSGIVELDGLR 823
EV+ DPSRDESLI ELLE K +V D+ S WF QDLA EQDA+GS+V+EQSG++E GL
Sbjct: 38 EVFADPSRDESLIFELLEFKPDVADNGSAGWFLQDLASEQDAEGSVVIEQSGVLEAPGLM 97
Query: 824 FRNMPAIMTTAVGQMSVSKGKQGREAQNVVKVYLANLRLKGVGTDVLITAYEPIVISPFS 1003
+ N PA++TTAVGQM++SKG+QGREAQN+VKVYLANLRL+GV TDVL++AYEPIVI+P S
Sbjct: 98 YNNTPAVVTTAVGQMAISKGRQGREAQNIVKVYLANLRLRGVDTDVLVSAYEPIVINPLS 157
Query: 1004 ESARTAGAGLAVPAMQPGCMQMADVFKLAVSSFKVQDWNLF 1126
ESA T GAG+AVPA Q GCM M +VFKLAV+SF+V DW LF
Sbjct: 158 ESADTVGAGVAVPAAQAGCMPMDEVFKLAVTSFRVHDWGLF 198
Score = 29.3 bits (64), Expect(2) = 7e-62
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 475 PLFGGAIWSTFPLRFQ 522
PLFGG I STFP RFQ
Sbjct: 10 PLFGGKISSTFPHRFQ 25