BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000920
         (1057 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67425.1| hypothetical protein VITISV_006652 [Vitis vinifera]   343   5e-92
emb|CBI19029.3| unnamed protein product [Vitis vinifera]              327   4e-87
ref|XP_003589591.1| Replication factor C large subunit [Medicago...   261   2e-67
ref|XP_002302240.1| predicted protein [Populus trichocarpa] gi|2...   246   5e-63
ref|XP_003561795.1| PREDICTED: uncharacterized protein LOC100837...   237   4e-60

>emb|CAN67425.1| hypothetical protein VITISV_006652 [Vitis vinifera]
          Length = 1170

 Score =  343 bits (879), Expect = 5e-92
 Identities = 180/340 (52%), Positives = 239/340 (70%), Gaps = 6/340 (1%)
 Frame = +2

Query: 56   MGERADLKNVLLVSGPVGSGKSAAIYACAREQGFEVIEVSASDWRNGAQMKLKFGAAMES 235
            + E   LKNVLLV+GPVGSGKSAAIYACA+EQGF +IE++ S  R+G  +K + G A+ES
Sbjct: 326  LDEGTGLKNVLLVTGPVGSGKSAAIYACAKEQGFRIIEINTSGLRSGTVVKQRIGEALES 385

Query: 236  LGLNKWSLEVPLGLNVKHIPEFPSTQPCKSSIRESDDDVIEVLPETCKDKSDGLKSEPCN 415
             GL + SLE P+G   KHI +     P  ++ +E +  VIE++P + ++ S      P  
Sbjct: 386  HGLKR-SLENPIGSQSKHIMKSFPALPNGTATQEFESKVIELIPSSDEEDSHDAIGTPEK 444

Query: 416  VGVKDNSTASHRGADKTLILFEDVDAVFDEDRGLIASIQQIAETAKRPIILTSSSKDPLL 595
               K N TA  RG   TLILFEDVD  F EDRGLIA+IQQ+AETAKRPIILTS+S +P+L
Sbjct: 445  HIHKKNRTACDRGETITLILFEDVDITFPEDRGLIAAIQQLAETAKRPIILTSNSNNPVL 504

Query: 596  PDQLDRVEVRFAVPLPEELSSLVYMVCGAEQADINPELLDQFIRCCQGDIRKIIMLLQFW 775
            PD LDR+EV F +P P+EL    YMVC AE+ +I P L+++FI  CQGDIRK +M LQFW
Sbjct: 505  PDNLDRLEVCFTLPSPKELLCHAYMVCAAEKTNIQPWLIERFIEYCQGDIRKTLMHLQFW 564

Query: 776  CQGKTNKIDRRIQSTYGPPHFDVDAGHHILPKVIPWEFPCQLAELVEREITKSLPMVKGN 955
            CQGK  + DR+    YGP  FD++AGH ILPK+IPW+FP QL+ELVE+EI KSL  ++G+
Sbjct: 565  CQGKRYRQDRKAHKIYGPLSFDLEAGHQILPKIIPWDFPSQLSELVEKEIAKSLSKMEGD 624

Query: 956  ASLLDIVEEEEFSSQDMQEALGM------NMEAKKEAMLN 1057
            +S +++++EE   +++MQ  L M      ++EAKKEAM +
Sbjct: 625  SSSMEVIKEEGLHNKEMQNGLEMHDYEKDSIEAKKEAMFS 664


>emb|CBI19029.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  327 bits (837), Expect = 4e-87
 Identities = 178/351 (50%), Positives = 237/351 (67%), Gaps = 17/351 (4%)
 Frame = +2

Query: 56   MGERADLKNVLLVSGPVG-----------SGKSAAIYACAREQGFEVIEVSASDWRNGAQ 202
            + E   LKNVLLV+GPVG           SGKSAAIYACA+EQGF +IE++ S  R+G  
Sbjct: 100  LDEGTGLKNVLLVTGPVGVYTHSISTAIFSGKSAAIYACAKEQGFRIIEINTSGLRSGTV 159

Query: 203  MKLKFGAAMESLGLNKWSLEVPLGLNVKHIPEFPSTQPCKSSIRESDDDVIEVLPETCKD 382
            +K + G A+ES GL + SLE P+G   KHI +     P  ++ +E +  VIE++P + ++
Sbjct: 160  VKQRIGEALESHGLKR-SLENPIGSQSKHIMKSFPALPNGTATQEFESKVIELIPSSDEE 218

Query: 383  KSDGLKSEPCNVGVKDNSTASHRGADKTLILFEDVDAVFDEDRGLIASIQQIAETAKRPI 562
             S      P     K N TA  RG   TLILFEDVD  F EDRGLIA+IQQ+AETAKRPI
Sbjct: 219  DSHDDIGTPEKHIHKKNRTACDRGETITLILFEDVDITFPEDRGLIAAIQQLAETAKRPI 278

Query: 563  ILTSSSKDPLLPDQLDRVEVRFAVPLPEELSSLVYMVCGAEQADINPELLDQFIRCCQGD 742
            ILTS+S +P+LPD LDR+EV F +P  +EL    YMVC AE+ +I P L+++FI  CQGD
Sbjct: 279  ILTSNSNNPVLPDNLDRLEVCFTLPSLKELLCHAYMVCAAEKTNIQPWLIERFIEYCQGD 338

Query: 743  IRKIIMLLQFWCQGKTNKIDRRIQSTYGPPHFDVDAGHHILPKVIPWEFPCQLAELVERE 922
            IRK +M LQFWCQGK  +  ++    YGP  FD+DAGH ILPK+IPW+FP QL+ELVE+E
Sbjct: 339  IRKTLMHLQFWCQGKRYRQGQKAHKIYGPLSFDLDAGHQILPKIIPWDFPSQLSELVEKE 398

Query: 923  ITKSLPMVKGNASLLDIVEEEEFSSQDMQEALGM------NMEAKKEAMLN 1057
            I KSL  ++G++S +++++EE   +++MQ  L M      ++EAKKEAM +
Sbjct: 399  IAKSLSKMEGDSSSMEVIKEEGLHNKEMQNGLEMHDYEKDSIEAKKEAMFS 449


>ref|XP_003589591.1| Replication factor C large subunit [Medicago truncatula]
            gi|355478639|gb|AES59842.1| Replication factor C large
            subunit [Medicago truncatula]
          Length = 1178

 Score =  261 bits (668), Expect = 2e-67
 Identities = 146/311 (46%), Positives = 203/311 (65%), Gaps = 1/311 (0%)
 Frame = +2

Query: 56   MGERADLKNVLLVSGPVGSGKSAAIYACAREQGFEVIEVSASDWRNGAQMKLKFGAAMES 235
            + E   LKNVLL++GPVGSGKSAA+YACA+EQGFEV+E++ SD RN   +K  FG A+ S
Sbjct: 346  VSEEGSLKNVLLITGPVGSGKSAAVYACAQEQGFEVLELNTSDCRNATAVKQYFGDALGS 405

Query: 236  LGLNKWSLEVPLGLNVKHIPEFPS-TQPCKSSIRESDDDVIEVLPETCKDKSDGLKSEPC 412
              + K  +E  +G   K +    +   P     +E D DVIE++  +  D + G      
Sbjct: 406  QCV-KSLVEHTVGSQKKTLKLLQAPASPNVKEAKEMDHDVIEMITLS-DDGAHGPGGTSQ 463

Query: 413  NVGVKDNSTASHRGADKTLILFEDVDAVFDEDRGLIASIQQIAETAKRPIILTSSSKDPL 592
             +   DN+  S   A +TLIL EDVD +F EDRG IA+IQ IAETAK PIILTS+SK   
Sbjct: 464  KLHAIDNTLTSD--AVQTLILVEDVDILFPEDRGCIAAIQHIAETAKGPIILTSNSKKAG 521

Query: 593  LPDQLDRVEVRFAVPLPEELSSLVYMVCGAEQADINPELLDQFIRCCQGDIRKIIMLLQF 772
            LP+   R+ V F++PLP+EL   ++ VC  E+ D NP L+++FI+ C  DIRK I+ LQF
Sbjct: 522  LPNNFCRLHVSFSLPLPDELLRHLFTVCATEEVDANPLLMEKFIQSCDRDIRKTILHLQF 581

Query: 773  WCQGKTNKIDRRIQSTYGPPHFDVDAGHHILPKVIPWEFPCQLAELVEREITKSLPMVKG 952
            W Q K    D+++Q+ YG   FD++AGH ILPK+IPW FP +L++L+E E+TKS+  ++ 
Sbjct: 582  WFQNKKYSKDKKVQTLYGSLPFDLEAGHKILPKMIPWSFPSELSKLIENEVTKSIATMEN 641

Query: 953  NASLLDIVEEE 985
            N+S   +V+EE
Sbjct: 642  NSSWEGLVKEE 652


>ref|XP_002302240.1| predicted protein [Populus trichocarpa] gi|222843966|gb|EEE81513.1|
            predicted protein [Populus trichocarpa]
          Length = 1068

 Score =  246 bits (629), Expect = 5e-63
 Identities = 144/342 (42%), Positives = 202/342 (59%), Gaps = 10/342 (2%)
 Frame = +2

Query: 62   ERADLKNVLLVSGPVGSGKSAAIYACAREQGFEVIEVSASDWRNGAQMKLKFGAAMESLG 241
            E A LKNVLL++GP GSGKSAAIYACA+E+GF+V+E +  + ++                
Sbjct: 455  EGASLKNVLLITGPTGSGKSAAIYACAKEEGFKVLEKTHVEPQSN--------------- 499

Query: 242  LNKWSLEVPLGLNVKHIPEFPSTQPCKSSIRESDDDVIEVLPETCKDKSDGLKSEPCNVG 421
                           +I +F S  P     ++    ++EV+P + +D S G         
Sbjct: 500  ---------------NITKFSSALPDSKLTQDFYRKMVEVVPISDEDNSLGATEATVKFD 544

Query: 422  VKDNSTASHRGADKTLILFEDVDAVFDEDRGLIASIQQIAETAKRPIILTSSSKDPLLPD 601
              D++ A  +G  K LILFEDVD  F EDRG +A+IQQIAE AK P+ILTS+ + P LP 
Sbjct: 545  SNDSTIACGQGKLKHLILFEDVDLAFTEDRGFVAAIQQIAEKAKGPVILTSNCEKPDLPA 604

Query: 602  QLDRVEVRFAVPLPEELSSLVYMVCGAEQADINPELLDQFIRCCQGDIRKIIMLLQFWCQ 781
             LDR+EV F +P  +EL  L  MVC AE+ +I   LL Q +  CQGDIRK IM LQFW Q
Sbjct: 605  NLDRLEVCFVLPSEKELLRLADMVCSAEKVNIQAHLLKQVVEYCQGDIRKTIMHLQFWFQ 664

Query: 782  GKTNK---IDRRIQSTYGPPHFDVDAGHHILPKVIPWEFPCQLAELVEREITKSLPMVKG 952
            G+  +     R  Q  +GP  FD +AGH +LPK++PW+FPCQL+ELVE+EI  SL M+  
Sbjct: 665  GRQIRKLSPSREAQRLFGPLMFDPEAGHQVLPKMMPWDFPCQLSELVEKEIATSLSMMVE 724

Query: 953  NASLLDIVEEEEFSSQDMQEALGMN-------MEAKKEAMLN 1057
            N+  L+++ +E+F  +++Q  + ++        + KKEAML+
Sbjct: 725  NSVSLEVI-KEDFEDKELQNNIKIHNYGKDSGTKTKKEAMLS 765


>ref|XP_003561795.1| PREDICTED: uncharacterized protein LOC100837229 [Brachypodium
            distachyon]
          Length = 1272

 Score =  237 bits (604), Expect = 4e-60
 Identities = 138/316 (43%), Positives = 184/316 (58%)
 Frame = +2

Query: 62   ERADLKNVLLVSGPVGSGKSAAIYACAREQGFEVIEVSASDWRNGAQMKLKFGAAMESLG 241
            E +D +NVLL++GPVG GKSAA++ACAREQGF VIEV+ SD RNGA +K KF  A +S G
Sbjct: 458  EASDFENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDTRNGAYVKQKFEEATKSHG 517

Query: 242  LNKWSLEVPLGLNVKHIPEFPSTQPCKSSIRESDDDVIEVLPETCKDKSDGLKSEPCNVG 421
            L KWS E              +T P   S+     D    +P+  +       S  C   
Sbjct: 518  LEKWSQEEV------------TTPPRNDSL-----DPTSGIPDRTEYNQSISCSVKCYSS 560

Query: 422  VKDNSTASHRGADKTLILFEDVDAVFDEDRGLIASIQQIAETAKRPIILTSSSKDPLLPD 601
             K +  A  +  +KTLILFEDVD VFDEDRG I++I +IAET K PIILTS+ KDP LP 
Sbjct: 561  SKSSDEAPKQVMNKTLILFEDVDTVFDEDRGFISTILKIAETTKWPIILTSNKKDPSLPH 620

Query: 602  QLDRVEVRFAVPLPEELSSLVYMVCGAEQADINPELLDQFIRCCQGDIRKIIMLLQFWCQ 781
             LD++ + F  P   EL S V M+C +E  ++    L   I  C GDIR+  +LLQFW Q
Sbjct: 621  LLDQLVLDFKYPSSGELLSHVGMICKSEGVNVTASQLKYIINACLGDIRRTTLLLQFWYQ 680

Query: 782  GKTNKIDRRIQSTYGPPHFDVDAGHHILPKVIPWEFPCQLAELVEREITKSLPMVKGNAS 961
            GK    +R  +   GP   D+DA H  +P+++PW+FPC+L+E V  EI K++ +      
Sbjct: 681  GKHQYTERSNKCLSGPFSLDLDAIHSTVPRMLPWDFPCKLSETVCMEIEKNILLADEKKR 740

Query: 962  LLDIVEEEEFSSQDMQ 1009
             L   E  EF + ++Q
Sbjct: 741  QL---EASEFEALELQ 753