BLASTX nr result
ID: Coptis25_contig00000881
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000881
(382 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic ... 103 6e-25
gb|ACJ84537.1| unknown [Medicago truncatula] gi|388500526|gb|AFK... 100 3e-24
ref|XP_003609971.1| 20 kDa chaperonin [Medicago truncatula] gi|3... 100 3e-24
ref|XP_003609972.1| 20 kDa chaperonin [Medicago truncatula] gi|3... 100 3e-24
ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|3068793... 101 5e-24
>ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera]
gi|50660327|gb|AAT80888.1| chloroplast chaperonin 21
[Vitis vinifera] gi|297738526|emb|CBI27771.3| unnamed
protein product [Vitis vinifera]
Length = 251
Score = 103 bits (256), Expect(2) = 6e-25
Identities = 50/59 (84%), Positives = 58/59 (98%)
Frame = +1
Query: 154 STLKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKLEITVK 330
++LKPLGDRVLVKIK+AEEKTVGGILLP+TA++KPQGGEVVAVGEGKT+GKNKL+I VK
Sbjct: 58 TSLKPLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVK 116
Score = 35.8 bits (81), Expect(2) = 6e-25
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 329 KIGAQIVYSKYAGTELEF 382
K GAQ+VYSKYAGTE+EF
Sbjct: 116 KTGAQVVYSKYAGTEVEF 133
Score = 57.4 bits (137), Expect(2) = 5e-07
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = +1
Query: 160 LKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEG 291
LKPL DRVL+K+ AEEKT GG+LL ++ KP G VVAVG G
Sbjct: 158 LKPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVVAVGPG 201
Score = 21.2 bits (43), Expect(2) = 5e-07
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 335 GAQIVYSKYAGTELE 379
G ++YSKYAG + +
Sbjct: 217 GNTVLYSKYAGNDFK 231
>gb|ACJ84537.1| unknown [Medicago truncatula] gi|388500526|gb|AFK38329.1| unknown
[Medicago truncatula]
Length = 253
Score = 100 bits (250), Expect(2) = 3e-24
Identities = 48/59 (81%), Positives = 57/59 (96%)
Frame = +1
Query: 154 STLKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKLEITVK 330
+T+KPLGDRVLVKIK AEEKT GGILLPSTA+SKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 60 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVK 118
Score = 35.8 bits (81), Expect(2) = 3e-24
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 329 KIGAQIVYSKYAGTELEF 382
K GAQ+VYSKYAGTE+EF
Sbjct: 118 KAGAQVVYSKYAGTEVEF 135
Score = 56.6 bits (135), Expect(2) = 8e-07
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 160 LKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEG 291
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 160 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 203
Score = 21.2 bits (43), Expect(2) = 8e-07
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 335 GAQIVYSKYAGTELE 379
G ++YSKYAG + +
Sbjct: 219 GNTVLYSKYAGNDFK 233
>ref|XP_003609971.1| 20 kDa chaperonin [Medicago truncatula] gi|355511026|gb|AES92168.1|
20 kDa chaperonin [Medicago truncatula]
Length = 253
Score = 100 bits (250), Expect(2) = 3e-24
Identities = 48/59 (81%), Positives = 57/59 (96%)
Frame = +1
Query: 154 STLKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKLEITVK 330
+T+KPLGDRVLVKIK AEEKT GGILLPSTA+SKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 60 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVK 118
Score = 35.8 bits (81), Expect(2) = 3e-24
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 329 KIGAQIVYSKYAGTELEF 382
K GAQ+VYSKYAGTE+EF
Sbjct: 118 KAGAQVVYSKYAGTEVEF 135
Score = 56.6 bits (135), Expect(2) = 8e-07
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 160 LKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEG 291
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 160 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 203
Score = 21.2 bits (43), Expect(2) = 8e-07
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 335 GAQIVYSKYAGTELE 379
G ++YSKYAG + +
Sbjct: 219 GNTVLYSKYAGNDFK 233
>ref|XP_003609972.1| 20 kDa chaperonin [Medicago truncatula] gi|355511027|gb|AES92169.1|
20 kDa chaperonin [Medicago truncatula]
Length = 207
Score = 100 bits (250), Expect(2) = 3e-24
Identities = 48/59 (81%), Positives = 57/59 (96%)
Frame = +1
Query: 154 STLKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKLEITVK 330
+T+KPLGDRVLVKIK AEEKT GGILLPSTA+SKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 14 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVK 72
Score = 35.8 bits (81), Expect(2) = 3e-24
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 329 KIGAQIVYSKYAGTELEF 382
K GAQ+VYSKYAGTE+EF
Sbjct: 72 KAGAQVVYSKYAGTEVEF 89
Score = 56.6 bits (135), Expect(2) = 8e-07
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 160 LKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEG 291
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 114 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 157
Score = 21.2 bits (43), Expect(2) = 8e-07
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 335 GAQIVYSKYAGTELE 379
G ++YSKYAG + +
Sbjct: 173 GNTVLYSKYAGNDFK 187
>ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|30687936|ref|NP_851045.1|
chaperonin 20 [Arabidopsis thaliana]
gi|334187803|ref|NP_001190350.1| chaperonin 20
[Arabidopsis thaliana] gi|297808145|ref|XP_002871956.1|
hypothetical protein ARALYDRAFT_488978 [Arabidopsis
lyrata subsp. lyrata]
gi|12643263|sp|O65282.2|CH10C_ARATH RecName: Full=20 kDa
chaperonin, chloroplastic; AltName: Full=Chaperonin 10;
Short=Ch-CPN10; Short=Cpn10; AltName: Full=Chaperonin
20; AltName: Full=Protein Cpn21; Flags: Precursor
gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10
[Arabidopsis thaliana]
gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120
[Arabidopsis thaliana]
gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120
[Arabidopsis thaliana] gi|4127456|emb|CAA09368.1| Cpn21
protein [Arabidopsis thaliana]
gi|14334612|gb|AAK59484.1| putative chloroplast Cpn21
protein [Arabidopsis thaliana]
gi|14587373|dbj|BAB61619.1| chaperonin 20 [Arabidopsis
thaliana] gi|17065646|gb|AAL33817.1| putative
chloroplast Cpn21 protein [Arabidopsis thaliana]
gi|297317793|gb|EFH48215.1| hypothetical protein
ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata]
gi|332005498|gb|AED92881.1| chaperonin 20 [Arabidopsis
thaliana] gi|332005499|gb|AED92882.1| chaperonin 20
[Arabidopsis thaliana] gi|332005500|gb|AED92883.1|
chaperonin 20 [Arabidopsis thaliana]
Length = 253
Score = 101 bits (252), Expect(2) = 5e-24
Identities = 48/58 (82%), Positives = 57/58 (98%)
Frame = +1
Query: 154 STLKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKLEITV 327
+++KPLGDRVLVKIK AEEKT+GGILLPSTA+SKPQGGEVVAVGEG+T+GKNK++ITV
Sbjct: 60 TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITV 117
Score = 34.3 bits (77), Expect(2) = 5e-24
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 335 GAQIVYSKYAGTELEF 382
GAQI+YSKYAGTE+EF
Sbjct: 120 GAQIIYSKYAGTEVEF 135
Score = 57.4 bits (137), Expect(2) = 2e-07
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = +1
Query: 160 LKPLGDRVLVKIKSAEEKTVGGILLPSTARSKPQGGEVVAVGEGKTLGKNKL 315
LKPL DRV +K+ AEEKT GG+LL T + KP G V+AVG G + K+
Sbjct: 160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKI 211
Score = 22.3 bits (46), Expect(2) = 2e-07
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 335 GAQIVYSKYAGTELE 379
G+ ++YSKYAG + +
Sbjct: 219 GSTVLYSKYAGNDFK 233