BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000752
         (1052 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri...   240   4e-61
ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   231   2e-58
ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   231   2e-58
ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|2...   217   4e-54
ref|NP_171616.1| RNA recognition motif-containing protein [Arabi...   216   7e-54

>ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223545556|gb|EEF47060.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 281

 Score =  240 bits (613), Expect = 4e-61
 Identities = 130/263 (49%), Positives = 175/263 (66%), Gaps = 13/263 (4%)
 Frame = +1

Query: 94  SFPQPAFSCSSISHESPPPAPCLISNTFNRPTT-TNGAFRVFAVAEEQPLSA-------- 246
           S P P FSC   SH      P L S++   P   +   F + A+  E+ + A        
Sbjct: 21  SLPFPKFSCFLQSHSRE--IPLLSSSSSLWPANKSKRVFAILALVNEESVVAEEVDREEN 78

Query: 247 ---SSQEENGSPKPPQVIPYQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGIS 417
              S ++E G     Q  P +LYVCNLPRSCDI++L+++FKPYG V SVE+SRN ETGIS
Sbjct: 79  ENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGIS 138

Query: 418 KGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFE 594
           +GCG+VTM SI+    A+ ALDGSD+ GREMRV+ S DM +  +N + L+S   K L +E
Sbjct: 139 RGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYE 198

Query: 595 TPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAA 774
           +P K+YVGNLAW+VKP+ LR+ F++FGTVVS RVLYDRK GKNR Y FLSFSS +E +AA
Sbjct: 199 SPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAA 258

Query: 775 MTSDGKEILGRKMLVRKALKSSE 843
           ++ +GK+  GR ++VRK ++  +
Sbjct: 259 LSFNGKDFRGRILVVRKGVERED 281


>ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 284

 Score =  231 bits (590), Expect = 2e-58
 Identities = 112/186 (60%), Positives = 147/186 (79%), Gaps = 1/186 (0%)
 Frame = +1

Query: 292 PYQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAV 471
           P +LYVCNLPRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++
Sbjct: 99  PCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 158

Query: 472 TALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDF 648
           TALDGSDV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  
Sbjct: 159 TALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGD 218

Query: 649 LREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKEILGRKMLVRKA 828
           LR  F++FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ 
Sbjct: 219 LRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREG 278

Query: 829 LKSSES 846
           L+ SES
Sbjct: 279 LERSES 284


>ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 286

 Score =  231 bits (590), Expect = 2e-58
 Identities = 112/186 (60%), Positives = 147/186 (79%), Gaps = 1/186 (0%)
 Frame = +1

Query: 292 PYQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAV 471
           P +LYVCNLPRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++
Sbjct: 101 PCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI 160

Query: 472 TALDGSDVLGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDF 648
           TALDGSDV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  
Sbjct: 161 TALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGD 220

Query: 649 LREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKEILGRKMLVRKA 828
           LR  F++FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ 
Sbjct: 221 LRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREG 280

Query: 829 LKSSES 846
           L+ SES
Sbjct: 281 LERSES 286


>ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|222861004|gb|EEE98546.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  217 bits (552), Expect = 4e-54
 Identities = 124/268 (46%), Positives = 168/268 (62%), Gaps = 13/268 (4%)
 Frame = +1

Query: 82  LSSVSFPQPAFSCSSISHESPP-----PAPCLISNTFNRPTTTNGAF-RVFAVAEEQPLS 243
           L + + P PA + +SIS   PP     P  C   +  N     +  F  V AV +++ + 
Sbjct: 19  LKTKTRPPPA-AAASISSFCPPIQLQHPKLCCSLSLSNTLCLRSRKFLAVLAVVDKETVI 77

Query: 244 ASS------QEENGSPKPPQVIPYQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTE 405
                    + ++   K  Q  P +LYVCNLPRS DI+ L++MFKP+G+V SVE+SRN E
Sbjct: 78  TEEINHVREEIDDFELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPE 137

Query: 406 TGISKGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDMTR-HKNIQILNSETNKT 582
           TG+S+GCGY+TM S++    AV+ALDGSDV GREMRVR S +++   +N + LNS   K 
Sbjct: 138 TGVSRGCGYITMGSVESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALNSAPTKH 197

Query: 583 LIFETPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQE 762
           L +E+PHK+YVGNL WS KPD LR  F  FG VVS RVL DRK GKNR YAFLSF S  E
Sbjct: 198 LFYESPHKLYVGNLPWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLSFLSDAE 257

Query: 763 FEAAMTSDGKEILGRKMLVRKALKSSES 846
            +AA++ +G E   R ++V++ ++   S
Sbjct: 258 RDAALSMNGTEFYDRMLVVKRGVEKRPS 285


>ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|21554268|gb|AAM63343.1|
           ribonucleoprotein, putative [Arabidopsis thaliana]
           gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
           [Arabidopsis thaliana] gi|332189110|gb|AEE27231.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 293

 Score =  216 bits (550), Expect = 7e-54
 Identities = 109/209 (52%), Positives = 152/209 (72%), Gaps = 2/209 (0%)
 Frame = +1

Query: 226 EEQPLSASSQEENGSPKPPQVIPYQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTE 405
           E +P   S   +    K P+  P +LYVCN+PRS DI+QLLDMF+P+G V SVE+SRN +
Sbjct: 87  EAEPNKDSVVSKAEPVKKPR--PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQ 144

Query: 406 TGISKGCGYVTMASIDETIAAVTALDGSDVLGREMRVRLSTDMT--RHKNIQILNSETNK 579
           TG S+G GYVTM SI+    A+ +LDG++V GREMRVR S DM     +N ++LNS   K
Sbjct: 145 TGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKK 204

Query: 580 TLIFETPHKIYVGNLAWSVKPDFLREFFTQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQ 759
            L++E+ HK+YVGNL W  +PD LR  F++FGT+VS RVL+DRK G+NRV+AFLSF+S +
Sbjct: 205 ILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGE 264

Query: 760 EFEAAMTSDGKEILGRKMLVRKALKSSES 846
           E +AA++ +G +  GR+++VR+ ++ SES
Sbjct: 265 ERDAALSFNGTQYEGRRIIVREGIEKSES 293