BLASTX nr result
ID: Coptis25_contig00000737
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000737
(1657 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [O... 195 2e-56
emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] gi|57169178|gb|... 186 2e-53
ref|NP_849543.2| RNA binding / abscisic acid binding protein [Ar... 186 2e-53
gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arab... 186 2e-53
emb|CAB05391.1| FCA gamma [Arabidopsis thaliana] 185 3e-53
>gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 195 bits (496), Expect(2) = 2e-56
Identities = 141/454 (31%), Positives = 202/454 (44%), Gaps = 89/454 (19%)
Frame = -3
Query: 1529 QIFSPYGLVEDIFLLRDEMKQSRGSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRF 1350
+IF+PYG VED+++++D M+QSRG GFV+F R+ A+AAM+AL+G YVM GC+QPL++RF
Sbjct: 130 EIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRF 189
Query: 1349 AHPKRSKFGEHRNDNAVFSSGFGPKFHAPRSIRPAPNHGDAIDRDVQPNVCSLS------ 1188
A PKR + GE R A GF P+ A IRP N + R + P+ S
Sbjct: 190 ADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPRSAP 249
Query: 1187 -QAHDFASH----------------------------SVAESGVVPNPATMCSKPSMPEV 1095
Q ++F S S++ VP+ + M P P +
Sbjct: 250 HQFNNFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPSSSHMGMNP--PPM 307
Query: 1094 SPGHHL-----VPLEKXXXXXXXXXXXXXXQTQDTPASSKIQASPFPVQQLGQLQIQTE- 933
+ GHHL PL+K Q P P QQ+GQLQ+
Sbjct: 308 AQGHHLGGQQIPPLQKLPGLPQNFPVQLQNNQQGQPLQG-------PAQQIGQLQVPQSM 360
Query: 932 ------------------------------DVPSTVSQRKKCVPAIQ--------QQSAK 867
VPS VS + +P Q Q +
Sbjct: 361 GPGSFGQNRLSGQLPVSQPLMQQNASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQ 420
Query: 866 PLQQLADQSAQIPAPQEQVLQGIFQSAHQAPSQGHEQLHLMQHPSQTPVEERKSRDGEQQ 687
P+QQ+ Q+ Q+ Q+ LQ +QS+ QA Q +QL LMQ Q+ + ++ G+
Sbjct: 421 PVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQQPTQGQPV 480
Query: 686 QQEAARTAGTLPTSETFSVRSQTAPP----TCEWSEHNCPDGCKYYYNCITKESRWEKPN 519
Q + S ++ Q P TC W+EH P+G KYYYN IT+ES+W+KP
Sbjct: 481 QSSNPGAPNAIIPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPE 540
Query: 518 FSV---TQSKEVQLQKTI---SDQQRLQIHQTSS 435
V Q ++ Q QK + QQ+L + Q S
Sbjct: 541 EYVLYEQQQQQQQQQKLLLLQQHQQKLAMQQLQS 574
Score = 52.4 bits (124), Expect(2) = 2e-56
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = -1
Query: 1657 GPIQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKFSA 1529
GPIQVRYADGE+ER G AI KLF+ +LNKQA K++E+ A
Sbjct: 93 GPIQVRYADGERERHG--AIEHKLFVASLNKQATAKEIEEIFA 133
>emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] gi|57169178|gb|AAW38964.1| FCA
[Arabidopsis thaliana]
Length = 747
Score = 186 bits (472), Expect(2) = 2e-53
Identities = 142/427 (33%), Positives = 194/427 (45%), Gaps = 64/427 (14%)
Frame = -3
Query: 1529 QIFSPYGLVEDIFLLRDEMKQSRGSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRF 1350
+IF +G VED++L+RDE +QSRG GFV++ ++ A+AA++ LNGTY M GC+QPL+VRF
Sbjct: 229 EIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 288
Query: 1349 AHPKRSKFGEHRNDNAVFSSGFGPKFHAPRSIRPAPNHGD-------------AIDRDVQ 1209
A PKR K GE R+ G GP+F A RP N GD A R+V
Sbjct: 289 AEPKRPKPGESRDMAPPVGLGSGPRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVG 347
Query: 1208 P--NVCSLSQAHDFA-----------------SHSVAESGVVPNPATMCSKPSMPEV-SP 1089
P N DF+ + V +P P S + +
Sbjct: 348 PPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAA 407
Query: 1088 GHHLVPLEKXXXXXXXXXXXXXXQTQDTPASSKIQ-----ASPFPVQQLG---------- 954
G H+ PL+K QT A + +Q +S P QL
Sbjct: 408 GQHITPLKKPLHSPQGLPLPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATA 467
Query: 953 -QLQIQTEDVPSTVSQRK-KCVPAIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQ 780
Q + P+TVS + P QQQ + +Q + AQ+ + Q Q LQ FQS+ Q
Sbjct: 468 PQTPLNINLRPTTVSSATVQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQ 527
Query: 779 APSQGHEQLHLMQHPSQTPVEERKSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTA 615
A SQ +Q+ MQ P+Q + R G+QQ A T G+ P S QTA
Sbjct: 528 AISQLQQQVQSMQQPNQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTA 582
Query: 614 PPT---------CEWSEHNCPDGCKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQ 462
P C W+EH PDG KYYYN +T ES+WEKP + +E Q Q+ ++
Sbjct: 583 APAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKP 642
Query: 461 RLQIHQT 441
+Q QT
Sbjct: 643 TIQQSQT 649
Score = 51.6 bits (122), Expect(2) = 2e-53
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -1
Query: 1657 GPIQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEK 1538
GP+QVRYADGE+ER+G + KLF+ +LNKQA EK+VE+
Sbjct: 192 GPVQVRYADGERERIG--TLEFKLFVGSLNKQATEKEVEE 229
>ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid
binding protein [Arabidopsis thaliana]
Length = 747
Score = 186 bits (471), Expect(2) = 2e-53
Identities = 142/427 (33%), Positives = 193/427 (45%), Gaps = 64/427 (14%)
Frame = -3
Query: 1529 QIFSPYGLVEDIFLLRDEMKQSRGSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRF 1350
+IF +G VED++L+RDE +QSRG GFV++ ++ A+AA++ LNGTY M GC+QPL+VRF
Sbjct: 229 EIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 288
Query: 1349 AHPKRSKFGEHRNDNAVFSSGFGPKFHAPRSIRPAPNHGD-------------AIDRDVQ 1209
A PKR K GE R G GP+F A RP N GD A R+V
Sbjct: 289 AEPKRPKPGESREMAPPVGLGSGPRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVG 347
Query: 1208 P--NVCSLSQAHDFA-----------------SHSVAESGVVPNPATMCSKPSMPEV-SP 1089
P N DF+ + V +P P S + +
Sbjct: 348 PPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAA 407
Query: 1088 GHHLVPLEKXXXXXXXXXXXXXXQTQDTPASSKIQ-----ASPFPVQQLG---------- 954
G H+ PL+K QT A + +Q +S P QL
Sbjct: 408 GQHITPLKKPLHSPQGLPLPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATA 467
Query: 953 -QLQIQTEDVPSTVSQRK-KCVPAIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQ 780
Q + P+TVS + P QQQ + +Q + AQ+ + Q Q LQ FQS+ Q
Sbjct: 468 PQTPLNINLRPTTVSSATVQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQ 527
Query: 779 APSQGHEQLHLMQHPSQTPVEERKSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTA 615
A SQ +Q+ MQ P+Q + R G+QQ A T G+ P S QTA
Sbjct: 528 AISQLQQQVQSMQQPNQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTA 582
Query: 614 PPT---------CEWSEHNCPDGCKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQ 462
P C W+EH PDG KYYYN +T ES+WEKP + +E Q Q+ ++
Sbjct: 583 APAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKP 642
Query: 461 RLQIHQT 441
+Q QT
Sbjct: 643 TIQQSQT 649
Score = 51.6 bits (122), Expect(2) = 2e-53
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -1
Query: 1657 GPIQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEK 1538
GP+QVRYADGE+ER+G + KLF+ +LNKQA EK+VE+
Sbjct: 192 GPVQVRYADGERERIG--TLEFKLFVGSLNKQATEKEVEE 229
>gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 186 bits (471), Expect(2) = 2e-53
Identities = 142/427 (33%), Positives = 193/427 (45%), Gaps = 64/427 (14%)
Frame = -3
Query: 1529 QIFSPYGLVEDIFLLRDEMKQSRGSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRF 1350
+IF +G VED++L+RDE +QSRG GFV++ ++ A+AA++ LNGTY M GC+QPL+VRF
Sbjct: 154 EIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 213
Query: 1349 AHPKRSKFGEHRNDNAVFSSGFGPKFHAPRSIRPAPNHGD-------------AIDRDVQ 1209
A PKR K GE R G GP+F A RP N GD A R+V
Sbjct: 214 AEPKRPKPGESREMAPPVGLGSGPRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVG 272
Query: 1208 P--NVCSLSQAHDFA-----------------SHSVAESGVVPNPATMCSKPSMPEV-SP 1089
P N DF+ + V +P P S + +
Sbjct: 273 PPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAA 332
Query: 1088 GHHLVPLEKXXXXXXXXXXXXXXQTQDTPASSKIQ-----ASPFPVQQLG---------- 954
G H+ PL+K QT A + +Q +S P QL
Sbjct: 333 GQHITPLKKPLHSPQGLPLPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATA 392
Query: 953 -QLQIQTEDVPSTVSQRK-KCVPAIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQ 780
Q + P+TVS + P QQQ + +Q + AQ+ + Q Q LQ FQS+ Q
Sbjct: 393 PQTPLNINLRPTTVSSATVQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQ 452
Query: 779 APSQGHEQLHLMQHPSQTPVEERKSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTA 615
A SQ +Q+ MQ P+Q + R G+QQ A T G+ P S QTA
Sbjct: 453 AISQLQQQVQSMQQPNQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTA 507
Query: 614 PPT---------CEWSEHNCPDGCKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQ 462
P C W+EH PDG KYYYN +T ES+WEKP + +E Q Q+ ++
Sbjct: 508 APAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKP 567
Query: 461 RLQIHQT 441
+Q QT
Sbjct: 568 TIQQSQT 574
Score = 51.6 bits (122), Expect(2) = 2e-53
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -1
Query: 1657 GPIQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEK 1538
GP+QVRYADGE+ER+G + KLF+ +LNKQA EK+VE+
Sbjct: 117 GPVQVRYADGERERIG--TLEFKLFVGSLNKQATEKEVEE 154
>emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 185 bits (470), Expect(2) = 3e-53
Identities = 142/427 (33%), Positives = 192/427 (44%), Gaps = 64/427 (14%)
Frame = -3
Query: 1529 QIFSPYGLVEDIFLLRDEMKQSRGSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRF 1350
+IF +G VED++L+RDE +QSRG GFV++ ++ A+AA++ LNGTY M GC+QPL+VRF
Sbjct: 229 EIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 288
Query: 1349 AHPKRSKFGEHRNDNAVFSSGFGPKFHAPRSIRPAPNHGD-------------AIDRDVQ 1209
A PKR K GE R G GP+F A RP N GD A R+V
Sbjct: 289 AEPKRPKPGESREMAPPVGLGSGPRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVG 347
Query: 1208 P--NVCSLSQAHDF-----------------ASHSVAESGVVPNPATMCSKPSMPEV-SP 1089
P N DF + V +P P S + +
Sbjct: 348 PPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAA 407
Query: 1088 GHHLVPLEKXXXXXXXXXXXXXXQTQDTPASSKIQ-----ASPFPVQQLG---------- 954
G H+ PL+K QT A + +Q +S P QL
Sbjct: 408 GQHITPLKKPLHSPQGLPLPLRPQTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATA 467
Query: 953 -QLQIQTEDVPSTVSQRK-KCVPAIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQ 780
Q + P+TVS + P QQQ + +Q + AQ+ + Q Q LQ FQS+ Q
Sbjct: 468 PQTPLNINLRPTTVSSATVQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQ 527
Query: 779 APSQGHEQLHLMQHPSQTPVEERKSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTA 615
A SQ +Q+ MQ P+Q + R G+QQ A T G+ P S QTA
Sbjct: 528 AISQLQQQVQSMQQPNQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTA 582
Query: 614 PPT---------CEWSEHNCPDGCKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQ 462
P C W+EH PDG KYYYN +T ES+WEKP + +E Q Q+ ++
Sbjct: 583 APAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKP 642
Query: 461 RLQIHQT 441
+Q QT
Sbjct: 643 TIQQSQT 649
Score = 51.6 bits (122), Expect(2) = 3e-53
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -1
Query: 1657 GPIQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEK 1538
GP+QVRYADGE+ER+G + KLF+ +LNKQA EK+VE+
Sbjct: 192 GPVQVRYADGERERIG--TLEFKLFVGSLNKQATEKEVEE 229