BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000723
         (1254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   293   5e-77
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   285   1e-74
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...   284   4e-74
ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arab...   276   8e-72
ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [S...   275   1e-71

>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
           Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
           29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  293 bits (751), Expect = 5e-77
 Identities = 148/198 (74%), Positives = 168/198 (84%)
 Frame = +1

Query: 301 RNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAED 480
           RN+S DLKIFVGNLPF+ DSA +AELFE+ G VE VEVIYDK TGRSRGFGFV MS+ E+
Sbjct: 81  RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140

Query: 481 VEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXXSYDNSNRVYVGNL 660
           VEAA Q+FNGYELDGRALRVNSGPPP + E SSF  G+R        S+D+SNRVYVGNL
Sbjct: 141 VEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSR-----GGGSFDSSNRVYVGNL 195

Query: 661 SWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVDLD 840
           +WGVD  ALE LF EQG+V++AKVVYDR+SGRSRGFGFVTYSS+EEVNNAI SL+GVDL+
Sbjct: 196 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLN 255

Query: 841 GRDIRVTMAEARPPRRQF 894
           GR IRV+ AEARPPRRQF
Sbjct: 256 GRAIRVSPAEARPPRRQF 273


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
           Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
           RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  285 bits (730), Expect = 1e-74
 Identities = 145/199 (72%), Positives = 165/199 (82%), Gaps = 1/199 (0%)
 Frame = +1

Query: 301 RNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAED 480
           RN+S DLKIFVGNL F+ DSA +AELFE+ G VE VEVIYDK TGRSRGFGFV MS+ E+
Sbjct: 81  RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140

Query: 481 VEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXX-SYDNSNRVYVGN 657
           VEAA Q+FNGYELDGRALRVNSGPPP + E SSF   +          S+D+SNRVYVGN
Sbjct: 141 VEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGN 200

Query: 658 LSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVDL 837
           L+WGVD  ALE LF EQG+V++AKVVYDR+SGRSRGFGFVTYSS+EEVNNAI SL+GVDL
Sbjct: 201 LAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 260

Query: 838 DGRDIRVTMAEARPPRRQF 894
           +GR IRV+ AEARPPRRQF
Sbjct: 261 NGRAIRVSPAEARPPRRQF 279


>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
           kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 278

 Score =  284 bits (726), Expect = 4e-74
 Identities = 144/197 (73%), Positives = 164/197 (83%)
 Frame = +1

Query: 304 NYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAEDV 483
           +Y+ DLK+FVGNLPFTVDSA++A LFE  G VE+VEVIYDK TGRSRGFGFV MST  +V
Sbjct: 88  SYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEV 147

Query: 484 EAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXXSYDNSNRVYVGNLS 663
           EAA Q+FNGYELDGR LRVN GPPPP+ + SSF RG+R         +DN NRV+V NL+
Sbjct: 148 EAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF-RGSR-----NASRFDNRNRVHVSNLA 201

Query: 664 WGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVDLDG 843
           WGVDD  LENLFRE+G VLEAKVVYDR+SG+SRGFGFVTY+S+EEVN AI SL+GVDLDG
Sbjct: 202 WGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDG 261

Query: 844 RDIRVTMAEARPPRRQF 894
           R IRVT AEARPPRRQF
Sbjct: 262 RPIRVTQAEARPPRRQF 278


>ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
           lyrata] gi|297327336|gb|EFH57756.1| hypothetical protein
           ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]
          Length = 289

 Score =  276 bits (706), Expect = 8e-72
 Identities = 138/206 (66%), Positives = 164/206 (79%), Gaps = 8/206 (3%)
 Frame = +1

Query: 301 RNYSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAED 480
           +++S+DLK+FVGNLPF VDSA++A+LFE  G VE VEVIYDK TGRSRGFGFV MS+  +
Sbjct: 85  QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSE 144

Query: 481 VEAAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXXSYD--------NS 636
           VEAA  +FNGYELDGR LRVN+GPPPP+ E   F+RG R         Y         + 
Sbjct: 145 VEAAANQFNGYELDGRPLRVNAGPPPPKRE-DGFSRGPRSSFGSSGSGYGGGGGSGAGSG 203

Query: 637 NRVYVGNLSWGVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAIS 816
           NRVYVGNLSWGVDD ALE+LF EQG+V+EA+V+YDR+SGRS+GFGFVTY+SS+EV NAI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAIN 263

Query: 817 SLNGVDLDGRDIRVTMAEARPPRRQF 894
           SLNG DLDGR IRV+ AEARPPRRQF
Sbjct: 264 SLNGADLDGRQIRVSEAEARPPRRQF 289


>ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
           gi|241919059|gb|EER92203.1| hypothetical protein
           SORBIDRAFT_01g034120 [Sorghum bicolor]
          Length = 262

 Score =  275 bits (704), Expect = 1e-71
 Identities = 138/196 (70%), Positives = 164/196 (83%)
 Frame = +1

Query: 307 YSSDLKIFVGNLPFTVDSAEVAELFEKVGTVEQVEVIYDKQTGRSRGFGFVVMSTAEDVE 486
           +S DL++FVGNLPF+VDSA++A LFE+ G+VE VEVIYDK TGRSRGFGFV MS+ ++VE
Sbjct: 79  FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVE 138

Query: 487 AAVQKFNGYELDGRALRVNSGPPPPRDETSSFNRGARVXXXXXXXSYDNSNRVYVGNLSW 666
           AAV++FNGY LDGR+LRVNSGPPPPRD +S   RG R           ++NRVYVGNLSW
Sbjct: 139 AAVEQFNGYVLDGRSLRVNSGPPPPRDPSSQ--RGPR----------GDANRVYVGNLSW 186

Query: 667 GVDDHALENLFREQGRVLEAKVVYDRESGRSRGFGFVTYSSSEEVNNAISSLNGVDLDGR 846
           GVD+ AL NLF EQG VLEA++VYDRESGRSRGFGFVTY S+EEV NAIS+L+G DLDGR
Sbjct: 187 GVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGR 246

Query: 847 DIRVTMAEARPPRRQF 894
            IRVT+AE++PPRRQF
Sbjct: 247 QIRVTVAESKPPRRQF 262