BLASTX nr result

ID: Coptis25_contig00000692 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000692
         (2177 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-lik...   908   0.0  
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]    900   0.0  
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro...   898   0.0  
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik...   898   0.0  
ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|2...   894   0.0  

>ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-like [Vitis vinifera]
          Length = 583

 Score =  908 bits (2347), Expect = 0.0
 Identities = 432/560 (77%), Positives = 471/560 (84%), Gaps = 1/560 (0%)
 Frame = +1

Query: 280  DSXXXXXXXXSKTSAPKIDDTTYALANLSEN-KPIDPSQRVITYNPTYDQLWAPIYGPAH 456
            DS        SK+SAPK+DDTT ALA  + N KPIDP Q V+ +NPTYDQLWAPIYGPAH
Sbjct: 31   DSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQLWAPIYGPAH 90

Query: 457  PYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKM 636
            PYAKDGIAQGMRNHKLGFVENAAIEPF+FDEQYNTFHKYGYAADPSA +G+N VGD+E +
Sbjct: 91   PYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNNYVGDLEAL 150

Query: 637  KENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKS 816
            ++NDGISVYNI Q                 +   + +ED D+E V NPAT+ WL KN+KS
Sbjct: 151  EKNDGISVYNIPQHEQKKRKIEKKK-----ESESEENEDVDVEEVQNPATDTWLLKNKKS 205

Query: 817  PWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGR 996
            PW+GKKEGL  ELT                            V DKS FHGKEE+DYQGR
Sbjct: 206  PWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEF--VTDKSTFHGKEERDYQGR 263

Query: 997  SWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDV 1176
            SWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDV
Sbjct: 264  SWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDV 323

Query: 1177 FNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYV 1356
            FNSGKCMRTYMGH KAVRDISF NDGTKFL+AGYDKNIKYWDTETGQVIS+FSTGKIPYV
Sbjct: 324  FNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYV 383

Query: 1357 VKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSD 1536
            VKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSD
Sbjct: 384  VKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSD 443

Query: 1537 DKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNK 1716
            DKSLRVWEFGIPVVIKYISEPHMHSMP+ISLHPN+NWLAAQSLDNQILIYSTR+RFQLNK
Sbjct: 444  DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 503

Query: 1717 KKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEW 1896
            KKRFAGHI AGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCEW
Sbjct: 504  KKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 563

Query: 1897 HPLEQSKVATCGWDGMIHYW 1956
            HPLEQSKVATCGWDG+I YW
Sbjct: 564  HPLEQSKVATCGWDGLIKYW 583


>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
          Length = 581

 Score =  900 bits (2327), Expect = 0.0
 Identities = 426/554 (76%), Positives = 470/554 (84%), Gaps = 4/554 (0%)
 Frame = +1

Query: 310  SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 477
            SKTSAPK+DDT  AL    AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34   SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93

Query: 478  AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 657
            AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94   AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAIS 153

Query: 658  VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 837
            VYNI Q                  E+ DM+E+ +   VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154  VYNIPQHEQKKRKIEKKKEM---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210

Query: 838  GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1017
            GL  ELT                              DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211  GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEV---TADKSTFHGKEERDYQGRSWIAPPK 267

Query: 1018 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1197
            DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268  DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327

Query: 1198 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1377
            RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328  RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387

Query: 1378 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1557
            DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388  DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447

Query: 1558 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1737
            EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448  EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507

Query: 1738 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1917
            IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508  IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567

Query: 1918 VATCGWDGMIHYWD 1959
            VATCGWDG+I YWD
Sbjct: 568  VATCGWDGLIKYWD 581


>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
            [Cucumis sativus]
          Length = 580

 Score =  898 bits (2320), Expect = 0.0
 Identities = 426/553 (77%), Positives = 470/553 (84%), Gaps = 4/553 (0%)
 Frame = +1

Query: 310  SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 477
            SKTSAPK+DDT  AL    AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34   SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93

Query: 478  AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 657
            AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94   AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEKNDAIS 153

Query: 658  VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 837
            VYNI Q                  E+ DM+E+ +   VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154  VYNIPQHEQKKRKIEKKKKX---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210

Query: 838  GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1017
            GL  ELT                              DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211  GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAPPK 267

Query: 1018 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1197
            DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268  DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327

Query: 1198 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1377
            RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328  RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387

Query: 1378 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1557
            DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388  DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447

Query: 1558 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1737
            EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448  EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507

Query: 1738 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1917
            IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508  IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567

Query: 1918 VATCGWDGMIHYW 1956
            VATCGWDG+I YW
Sbjct: 568  VATCGWDGLIKYW 580


>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
          Length = 580

 Score =  898 bits (2320), Expect = 0.0
 Identities = 425/553 (76%), Positives = 469/553 (84%), Gaps = 4/553 (0%)
 Frame = +1

Query: 310  SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 477
            SKTSAPK+DDT  AL    AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34   SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93

Query: 478  AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 657
            AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94   AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEKNDAIS 153

Query: 658  VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 837
            VYNI Q                  E+ DM+E+ +   VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154  VYNIPQHEQKKRKIEKKKEM---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210

Query: 838  GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1017
            GL  ELT                              DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211  GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAPPK 267

Query: 1018 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1197
            DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268  DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327

Query: 1198 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1377
            RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328  RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387

Query: 1378 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1557
            DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388  DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447

Query: 1558 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1737
            EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448  EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507

Query: 1738 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1917
            IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508  IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567

Query: 1918 VATCGWDGMIHYW 1956
            VATCGWDG+I YW
Sbjct: 568  VATCGWDGLIKYW 580


>ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|222852429|gb|EEE89976.1|
            predicted protein [Populus trichocarpa]
          Length = 581

 Score =  894 bits (2310), Expect = 0.0
 Identities = 425/562 (75%), Positives = 470/562 (83%), Gaps = 2/562 (0%)
 Frame = +1

Query: 280  DSXXXXXXXXSKTSAPKIDDTTYAL--ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPA 453
            DS        SK++APK+DDT  AL  AN + +KPIDP Q  + +NPTYDQLWAP+ GPA
Sbjct: 25   DSSSPPRLLPSKSAAPKVDDTMLALTVANQTLSKPIDPVQHAVAFNPTYDQLWAPVLGPA 84

Query: 454  HPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEK 633
            HPYAKDGIAQGMRNHKLGFVENAAI+ F+FDEQYNTFHKYGYAADPSA +G+N VGD++ 
Sbjct: 85   HPYAKDGIAQGMRNHKLGFVENAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYVGDLDT 144

Query: 634  MKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRK 813
            +++ +GISVYNI Q                 +E GD D+  D E V+NPAT+ WL KNRK
Sbjct: 145  LEKTNGISVYNIPQHEQKKRKIEKKREVT--EEEGDGDDVMDKEEVENPATDAWLMKNRK 202

Query: 814  SPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQG 993
            SPW+GKKEGL  EL+                            V DK+ FHGKEE+DYQG
Sbjct: 203  SPWAGKKEGLQTELSEEQQKYAEEHARKKAEKAGGEKGEV---VADKTTFHGKEERDYQG 259

Query: 994  RSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWD 1173
            RSW+A PKDAKA+N+ CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWD
Sbjct: 260  RSWLAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 319

Query: 1174 VFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPY 1353
            VFNSGKCMRTYMGH KAVRDISF NDGTKFL+A YDKNIKYWDTETGQVIS+FSTGKIPY
Sbjct: 320  VFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVISTFSTGKIPY 379

Query: 1354 VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSS 1533
            VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVD+NRRFVTSS
Sbjct: 380  VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSS 439

Query: 1534 DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLN 1713
            DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTR+RFQLN
Sbjct: 440  DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRERFQLN 499

Query: 1714 KKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCE 1893
            KKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCE
Sbjct: 500  KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 559

Query: 1894 WHPLEQSKVATCGWDGMIHYWD 1959
            WHPLEQSKVATCGWDG+I YWD
Sbjct: 560  WHPLEQSKVATCGWDGLIKYWD 581


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