BLASTX nr result
ID: Coptis25_contig00000680
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000680
(1153 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g... 397 e-108
ref|NP_001055572.1| Os05g0419500 [Oryza sativa Japonica Group] g... 389 e-106
ref|XP_002526434.1| nucleic acid binding protein, putative [Rici... 389 e-106
ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|2... 387 e-105
ref|XP_002331132.1| predicted protein [Populus trichocarpa] gi|1... 382 e-104
>ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera]
gi|297739511|emb|CBI29693.3| unnamed protein product
[Vitis vinifera]
Length = 295
Score = 397 bits (1021), Expect = e-108
Identities = 206/308 (66%), Positives = 230/308 (74%), Gaps = 4/308 (1%)
Frame = +2
Query: 242 MGDRIPPGSYFQYSPSGLHGRAXXXXXXXXXXXXXXXXXXXLDRDSNGRYLAELLAERQK 421
M DR P GS+FQY PSGLH DR+ RYLAELLAE+QK
Sbjct: 1 MDDRRPHGSFFQYPPSGLHASPHRSSSLSS------------DRE---RYLAELLAEKQK 45
Query: 422 LAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQHSNGGLMDLEGW 601
L PFMQILP C+RLLNQEI R S + PN FVD +RIEH+SP RS QH NGG MDLEGW
Sbjct: 46 LGPFMQILPQCSRLLNQEIRRLSAIAPNQGFVDLERIEHDSPFRSLGQHPNGGPMDLEGW 105
Query: 602 SVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDKFPNFNFVGRLLG 781
MQ EENG L+RM FQ +GWH +PG +PV+K+VIRLDVPVDK+PN+NFVGR+LG
Sbjct: 106 PAMQTEENGPLRRMAPFQASSLGWHRAPGIPTTPVVKRVIRLDVPVDKYPNYNFVGRILG 165
Query: 782 PRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLHVLVEAEFPADLI 961
PRGNSLKRVEA T+CRVYIRG+GSVKD+VKEEKL+DKPGYEHLNEPLHVLVEAEF D+I
Sbjct: 166 PRGNSLKRVEAMTECRVYIRGQGSVKDAVKEEKLKDKPGYEHLNEPLHVLVEAEFSEDII 225
Query: 962 EPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----XXXXXXXXXXFNT 1129
RL QA+AILE+LLKPVDESLD YKKQQLRELAM+NGTLREE FNT
Sbjct: 226 NSRLEQAVAILENLLKPVDESLDQYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFNT 285
Query: 1130 AGMKRAKT 1153
AGMKRAKT
Sbjct: 286 AGMKRAKT 293
>ref|NP_001055572.1| Os05g0419500 [Oryza sativa Japonica Group] gi|53982667|gb|AAV25646.1|
unknown protein [Oryza sativa Japonica Group]
gi|113579123|dbj|BAF17486.1| Os05g0419500 [Oryza sativa
Japonica Group] gi|215704313|dbj|BAG93747.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218196817|gb|EEC79244.1| hypothetical protein
OsI_19999 [Oryza sativa Indica Group]
gi|222631627|gb|EEE63759.1| hypothetical protein
OsJ_18578 [Oryza sativa Japonica Group]
Length = 291
Score = 389 bits (1000), Expect = e-106
Identities = 200/308 (64%), Positives = 229/308 (74%), Gaps = 4/308 (1%)
Frame = +2
Query: 242 MGDRIPPGSYFQYSPSGLHGRAXXXXXXXXXXXXXXXXXXXLDRDSNGRYLAELLAERQK 421
M +RIPP ++FQ+ PSG H RYLAELLAERQK
Sbjct: 1 MDERIPPPAFFQFLPSGAHSSPHHQSPLRSPA------------SERERYLAELLAERQK 48
Query: 422 LAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQHSNGGLMDLEGW 601
LAPFMQ+LP C RLLNQEI+RAS L PNPNFV+ +R+ H SPLR T NG MDLEGW
Sbjct: 49 LAPFMQVLPFCNRLLNQEILRASSLPPNPNFVEPERVNHGSPLRLTGHPMNGQPMDLEGW 108
Query: 602 SVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDKFPNFNFVGRLLG 781
S MQ E MG Q+P MGW+ +PG SPV+KKV+R+DVPVDK+PN+NFVGRLLG
Sbjct: 109 SGMQTE-------MGVLQSPSMGWNVAPGVAGSPVVKKVVRIDVPVDKYPNYNFVGRLLG 161
Query: 782 PRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLHVLVEAEFPADLI 961
PRGNSLKRVEATTQCRVYIRGRGSVKDSVKE+KLRDKPGYEHLN+PLHVLVEAEFP+D++
Sbjct: 162 PRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNDPLHVLVEAEFPSDIV 221
Query: 962 EPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----XXXXXXXXXXFNT 1129
+ RLNQA+AILEDLLKPVDES+D+YKKQQLRELA++NGTLREE FN+
Sbjct: 222 DVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGTLREESPSPHLSPSPSVSPFNS 281
Query: 1130 AGMKRAKT 1153
GMKRAKT
Sbjct: 282 TGMKRAKT 289
>ref|XP_002526434.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223534214|gb|EEF35929.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 295
Score = 389 bits (999), Expect = e-106
Identities = 202/309 (65%), Positives = 228/309 (73%), Gaps = 4/309 (1%)
Frame = +2
Query: 239 MMGDRIPPGSYFQYSPSGLHGRAXXXXXXXXXXXXXXXXXXXLDRDSNGRYLAELLAERQ 418
MMG+RI PGS+FQY PSG H + DR+ RYLAELLAERQ
Sbjct: 1 MMGERITPGSFFQYPPSGAHQASPHRPSSLSS-----------DRE---RYLAELLAERQ 46
Query: 419 KLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQHSNGGLMDLEG 598
KL PF+Q+LPLC+RLLNQEI R SG FVDH+R EHESP RS Q +NG MDLE
Sbjct: 47 KLVPFIQVLPLCSRLLNQEIRRVSGFTQG--FVDHERYEHESPYRSLGQQTNGRPMDLEA 104
Query: 599 WSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDKFPNFNFVGRLL 778
W M EENG LQRM +FQ MGW G PG +PV+KKVIRLDVPVD +P++NFVGR+L
Sbjct: 105 WPRMPTEENGHLQRMASFQAASMGWPGVPGIPTTPVIKKVIRLDVPVDDYPSYNFVGRIL 164
Query: 779 GPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLHVLVEAEFPADL 958
GPRGNSLKRVEA T+CRVYIRG+GSVKDSVKEEKL+DKPGYEHLNEPLHVLVEAEFP D+
Sbjct: 165 GPRGNSLKRVEAMTECRVYIRGKGSVKDSVKEEKLKDKPGYEHLNEPLHVLVEAEFPEDI 224
Query: 959 IEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----XXXXXXXXXXFN 1126
++ R+ A+ IL+ LLKPVDESLDHYKKQQLRELAM+NGTLREE FN
Sbjct: 225 VDARVEHAVTILQSLLKPVDESLDHYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFN 284
Query: 1127 TAGMKRAKT 1153
TAGMKRAKT
Sbjct: 285 TAGMKRAKT 293
>ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|222839015|gb|EEE77366.1|
predicted protein [Populus trichocarpa]
Length = 294
Score = 387 bits (993), Expect = e-105
Identities = 203/308 (65%), Positives = 224/308 (72%), Gaps = 4/308 (1%)
Frame = +2
Query: 242 MGDRIPPGSYFQYSPSGLHGRAXXXXXXXXXXXXXXXXXXXLDRDSNGRYLAELLAERQK 421
MG+RIPPGSYFQY PSG+H + L D RYLAEL AE+ K
Sbjct: 1 MGERIPPGSYFQYPPSGVHHASPHRSTS-------------LPSDLE-RYLAELFAEKHK 46
Query: 422 LAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQHSNGGLMDLEGW 601
L PF+Q+LP C RLLNQEI RAS N VDH+R EHESP RS QHSNG MDLE W
Sbjct: 47 LGPFVQVLPNCCRLLNQEIRRASAC--NQGLVDHERYEHESPFRSLGQHSNGRTMDLEAW 104
Query: 602 SVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDKFPNFNFVGRLLG 781
S M EENG LQRM +F MGW G PG +PV+K+VIRLDVPVDK+P++NFVGR+LG
Sbjct: 105 SAMPTEENGHLQRMASFPAASMGWPGVPGIPITPVVKRVIRLDVPVDKYPSYNFVGRILG 164
Query: 782 PRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLHVLVEAEFPADLI 961
PRGNSLKRVEA T CRVYIRG+GSVKDS+KEEKL+DKPGYEHLNEPLHVLVEAEFP D+I
Sbjct: 165 PRGNSLKRVEALTDCRVYIRGKGSVKDSLKEEKLKDKPGYEHLNEPLHVLVEAEFPEDII 224
Query: 962 EPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----XXXXXXXXXXFNT 1129
RL AI ILE LLKPVDESLDHYKKQQLRELA++NGTLREE FNT
Sbjct: 225 NARLEHAITILESLLKPVDESLDHYKKQQLRELALLNGTLREESPSMSPSMSPSMSPFNT 284
Query: 1130 AGMKRAKT 1153
AGMKRAKT
Sbjct: 285 AGMKRAKT 292
>ref|XP_002331132.1| predicted protein [Populus trichocarpa] gi|118487494|gb|ABK95574.1|
unknown [Populus trichocarpa] gi|222872860|gb|EEF09991.1|
predicted protein [Populus trichocarpa]
Length = 294
Score = 382 bits (982), Expect = e-104
Identities = 200/308 (64%), Positives = 225/308 (73%), Gaps = 4/308 (1%)
Frame = +2
Query: 242 MGDRIPPGSYFQYSPSGLHGRAXXXXXXXXXXXXXXXXXXXLDRDSNGRYLAELLAERQK 421
MG+RIP GSYFQY PSG+H L D RYLAELLAE+ K
Sbjct: 1 MGERIPSGSYFQYPPSGVH-------------HATPQRSSSLPSDLE-RYLAELLAEKHK 46
Query: 422 LAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQHSNGGLMDLEGW 601
L PF+Q+LP+C RLL QEI RAS N FVDH+R EHESP RS QH NG MDLEGW
Sbjct: 47 LGPFVQVLPICCRLLYQEIRRASAY--NQGFVDHERYEHESPFRSLGQHPNGRPMDLEGW 104
Query: 602 SVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDKFPNFNFVGRLLG 781
S M EENG LQRM + MGW G PG ++PV+K+VIRLDVPVDK+PN+NFVGR+LG
Sbjct: 105 SAMPKEENGHLQRMASLPAASMGWPGVPGISSTPVVKRVIRLDVPVDKYPNYNFVGRILG 164
Query: 782 PRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLHVLVEAEFPADLI 961
PRGNSLKRVEA T+CRVYIRG+GSVKDS+KEEKL+DKPGYEHLNEPLHVLVEAEFP D++
Sbjct: 165 PRGNSLKRVEALTECRVYIRGKGSVKDSLKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIM 224
Query: 962 EPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----XXXXXXXXXXFNT 1129
RL+ AI ILE LLKPVDES D+YKKQQLRELA++NGTLREE FNT
Sbjct: 225 NARLDHAITILESLLKPVDESFDNYKKQQLRELALLNGTLREESPSMSPSMSPSMSPFNT 284
Query: 1130 AGMKRAKT 1153
AGMKRAKT
Sbjct: 285 AGMKRAKT 292