BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000676
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   341   9e-92
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   337   2e-90
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   327   1e-87
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   326   3e-87
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   324   8e-87

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  341 bits (874), Expect = 9e-92
 Identities = 166/202 (82%), Positives = 186/202 (92%)
 Frame = -2

Query: 616 KEEITRLFRIRKTVMQMLNDRGYLVADFELRATREDFVDKFGDHVKREDLAIHKSKNNDG 437
           +EEI RL RIRKTVMQML DRGY V DFE++ TRE F  K+G+++KREDL I+K+K ND 
Sbjct: 5   EEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDS 64

Query: 436 SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARNCIAEITTKFHLE 257
           SDQIYVFFPEEAKVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFAR CI EI+TKFHLE
Sbjct: 65  SDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLE 124

Query: 256 VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 77
           VFQEAELLVNIKEHVLVPEH+VL  ++KK+LLERYT+KETQLPR+QITDP+ARYYGLKRG
Sbjct: 125 VFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRG 184

Query: 76  QVVKIIRPSETAGRYITYRYVV 11
           QVVKIIRPSETAGRY+TYRYV+
Sbjct: 185 QVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  337 bits (863), Expect = 2e-90
 Identities = 164/202 (81%), Positives = 185/202 (91%)
 Frame = -2

Query: 616 KEEITRLFRIRKTVMQMLNDRGYLVADFELRATREDFVDKFGDHVKREDLAIHKSKNNDG 437
           +EEI+RLFRIRKTVMQML DRGY V DFE+  T+  FV KFG+++KREDL I+K+K  D 
Sbjct: 5   EEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDS 64

Query: 436 SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARNCIAEITTKFHLE 257
           SDQIYVFFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFAR CI EI+TKFHLE
Sbjct: 65  SDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLE 124

Query: 256 VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 77
           VFQEAELLVNIKEHVLVPEH+VL  ++KK+LLERYT+KETQLPR+Q++DP+ARY+GLKRG
Sbjct: 125 VFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRG 184

Query: 76  QVVKIIRPSETAGRYITYRYVV 11
           QVVKIIRPSETAGRYITYRYVV
Sbjct: 185 QVVKIIRPSETAGRYITYRYVV 206


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  327 bits (839), Expect = 1e-87
 Identities = 160/203 (78%), Positives = 184/203 (90%), Gaps = 1/203 (0%)
 Frame = -2

Query: 616 KEEITRLFRIRKTVMQMLNDRGYLVADFELRATREDFVDKFGDHVKREDLAIHKSKNNDG 437
           +EEITRLFRIRKTV QML DRGY V DFE+  TRE F  K+G+++KRED+ I+KSK ND 
Sbjct: 5   EEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDS 64

Query: 436 SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARNCIAEITTK-FHL 260
           SDQIYVFFPEEAKVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C++E T+K FHL
Sbjct: 65  SDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHL 124

Query: 259 EVFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKR 80
           EVFQEAELLVNIK+HVLVPEH++L  ++KK+LLERYT+KETQLPR+Q+TDPVARYYGLKR
Sbjct: 125 EVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKR 184

Query: 79  GQVVKIIRPSETAGRYITYRYVV 11
           GQVVKIIRPSETAGRY+TYRYVV
Sbjct: 185 GQVVKIIRPSETAGRYVTYRYVV 207


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  326 bits (835), Expect = 3e-87
 Identities = 161/222 (72%), Positives = 190/222 (85%), Gaps = 5/222 (2%)
 Frame = -2

Query: 661 HKESKKAEVGMADKE-----KEEITRLFRIRKTVMQMLNDRGYLVADFELRATREDFVDK 497
           H+ES  A      K+     +EEITRL+RIRKTVMQML DR YLV DFEL  ++ DF DK
Sbjct: 189 HQESNLAFCDTTTKKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDK 248

Query: 496 FGDHVKREDLAIHKSKNNDGSDQIYVFFPEEAKVGVKTMKTYTNRMKTENVFRAILVVQQ 317
           +G+++KREDL I+K+K +  SDQIYVFFPEEAKVGVKTMKTYTNRM +ENV+RAILV Q 
Sbjct: 249 YGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQT 308

Query: 316 NLTPFARNCIAEITTKFHLEVFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKET 137
           +LTPFA+ C++EI +KFHLEVFQEAELLVNIKEHVLVPEH++L   +KK+LLERYT+KET
Sbjct: 309 SLTPFAKTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKET 368

Query: 136 QLPRMQITDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV 11
           QLPR+Q+TDPVARYYGLKRGQVVKIIRPSETAGRY+TYR+VV
Sbjct: 369 QLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 410


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  324 bits (831), Expect = 8e-87
 Identities = 154/202 (76%), Positives = 184/202 (91%)
 Frame = -2

Query: 616 KEEITRLFRIRKTVMQMLNDRGYLVADFELRATREDFVDKFGDHVKREDLAIHKSKNNDG 437
           +EE+ RL+RI+KT+MQML DRGY +AD EL  T++ F+ K GD++KREDL   K+K ND 
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 436 SDQIYVFFPEEAKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARNCIAEITTKFHLE 257
           SDQ+Y+FFP+EAKVGVKTMK YTNRMK+ENVFRAILVVQQNLTPFAR CI+EI++KFHLE
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLE 123

Query: 256 VFQEAELLVNIKEHVLVPEHEVLGPDQKKSLLERYTLKETQLPRMQITDPVARYYGLKRG 77
           VFQEAE+LVNIKEHVLVPEH+VL  ++KK+LLERYT+KETQLPR+Q+TDP+ARY+GLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183

Query: 76  QVVKIIRPSETAGRYITYRYVV 11
           QVVKIIRPSETAGRY+TYRYVV
Sbjct: 184 QVVKIIRPSETAGRYVTYRYVV 205