BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000670
         (1766 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s...   417   e-114
ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arab...   416   e-113
ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|2...   416   e-113
ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   416   e-113
ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arab...   413   e-113

>ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
            max]
          Length = 589

 Score =  417 bits (1071), Expect = e-114
 Identities = 213/294 (72%), Positives = 235/294 (79%)
 Frame = -3

Query: 1500 RPLQCRDVIYESKLLEYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVR 1321
            R L+ R  IYESKLLEYD D+HL+VFWISCEAGTYVRTMC           HMQELRRVR
Sbjct: 189  RQLRIR-TIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVR 247

Query: 1320 SGIMGEKDNMVTMHDVMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAIC 1141
            SGIMGEKDNMV+MHDVMDAQWV+DN RDE YLRRV+MPLE+LLTSYKRLVVKDSAVNAIC
Sbjct: 248  SGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAIC 307

Query: 1140 YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 961
            YGAK MIPGLLRFEN+I+ GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV
Sbjct: 308  YGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 367

Query: 960  MDRDTYPRKWGLGPRASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHA 781
            MDRDTYPRKWGLGPRASMKK++++EG LDKHGKPNEKTP EW RN+VLPTGGD+++AG A
Sbjct: 368  MDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLA 427

Query: 780  AATEPIPAXXXXXXXXXXXXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVEE 619
            AA EP                         +  K  ++  SP  VP KK+KV+E
Sbjct: 428  AAPEP-----------EDDKIQKKEGDGEGKKRKKHESTDSPVAVPAKKVKVDE 470


>ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
            gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
            ribonucleoprotein complex subunit 4; AltName: Full=CBF5
            homolog; AltName: Full=Dyskerin; AltName:
            Full=Nopp-140-associated protein of 57 kDa homolog;
            Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
            homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
            pseudouridine synthase [Arabidopsis thaliana]
            gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
            thaliana] gi|28392852|gb|AAO41863.1| unknown protein
            [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein
            complex subunit 4 [Arabidopsis thaliana]
          Length = 565

 Score =  416 bits (1069), Expect = e-113
 Identities = 213/294 (72%), Positives = 239/294 (81%)
 Frame = -3

Query: 1500 RPLQCRDVIYESKLLEYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVR 1321
            R L+ R  IYESKLLEYDAD+HL+VFW+SCEAGTY+RTMC           HMQELRRVR
Sbjct: 183  RQLRIR-TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVR 241

Query: 1320 SGIMGEKDNMVTMHDVMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAIC 1141
            SGI+GE +NMVTMHDVMDAQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAIC
Sbjct: 242  SGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAIC 301

Query: 1140 YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 961
            YGAKLMIPGLLRFEN+I+ G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVV
Sbjct: 302  YGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVV 361

Query: 960  MDRDTYPRKWGLGPRASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHA 781
            MDRDTYPRKWGLGPRASMKKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG A
Sbjct: 362  MDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAA 421

Query: 780  AATEPIPAXXXXXXXXXXXXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVEE 619
            AA E I A                         K +D++ SPAPV TKK K +E
Sbjct: 422  AAPEEIKADAENGEAGEARKR------------KHDDSSDSPAPVTTKKSKTKE 463


>ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|222867894|gb|EEF05025.1|
            predicted protein [Populus trichocarpa]
          Length = 482

 Score =  416 bits (1068), Expect = e-113
 Identities = 206/246 (83%), Positives = 223/246 (90%)
 Frame = -3

Query: 1500 RPLQCRDVIYESKLLEYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVR 1321
            R L+ R  IYESKLLEYDADKHL+VFWISCEAGTYVRTMC           HMQELRRVR
Sbjct: 179  RQLRIR-TIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 237

Query: 1320 SGIMGEKDNMVTMHDVMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAIC 1141
            SGI+GEKDNMVTMHDVMDAQWV+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAIC
Sbjct: 238  SGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVILTSYKRLVVKDSAVNAIC 297

Query: 1140 YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 961
            YGAKLMIPGLLRFEN+IE GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV
Sbjct: 298  YGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 357

Query: 960  MDRDTYPRKWGLGPRASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHA 781
            MDRDTYPRKWGLGP+AS+KKK+++EG LDKHGKPN+ TP EW+RN+VLP GGD+MVAG A
Sbjct: 358  MDRDTYPRKWGLGPKASIKKKLISEGKLDKHGKPNDNTPHEWARNLVLPAGGDSMVAGLA 417

Query: 780  AATEPI 763
            AA EP+
Sbjct: 418  AAAEPV 423


>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]
          Length = 586

 Score =  416 bits (1068), Expect = e-113
 Identities = 215/293 (73%), Positives = 232/293 (79%)
 Frame = -3

Query: 1500 RPLQCRDVIYESKLLEYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVR 1321
            R L+ R  IYESKLLEYD D+HL+VFWISCEAGTYVRT+C           HMQELRRVR
Sbjct: 195  RQLRIR-TIYESKLLEYDPDRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVR 253

Query: 1320 SGIMGEKDNMVTMHDVMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAIC 1141
            SGI+GEKDNMVTMHDVMDAQWV+DN RDE+YLRRVIMPLEV+LTSYKRLVVKDSAVNAIC
Sbjct: 254  SGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAIC 313

Query: 1140 YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 961
            YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVA+IKRVV
Sbjct: 314  YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVV 373

Query: 960  MDRDTYPRKWGLGPRASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHA 781
            MDRDTYPRKWGLGPRA+MKKK++ EG L+KHGKPNE TP+EW RNVVLPTGGD+MVA  A
Sbjct: 374  MDRDTYPRKWGLGPRAAMKKKLITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLA 433

Query: 780  AATEPIPAXXXXXXXXXXXXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVE 622
            AA EP                            K  ++   P  VP KKIK E
Sbjct: 434  AAVEP---------TVKAETDVKEEIDGEQRKRKLNESTDDPVTVPAKKIKKE 477


>ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
            lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein
            ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  413 bits (1062), Expect = e-113
 Identities = 212/294 (72%), Positives = 238/294 (80%)
 Frame = -3

Query: 1500 RPLQCRDVIYESKLLEYDADKHLIVFWISCEAGTYVRTMCXXXXXXXXXXXHMQELRRVR 1321
            R L+ R  IYESKLLEYDAD+HL+VFW+SCEAGTY+RTMC           HMQELRRVR
Sbjct: 183  RQLRIR-TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVR 241

Query: 1320 SGIMGEKDNMVTMHDVMDAQWVFDNNRDENYLRRVIMPLEVLLTSYKRLVVKDSAVNAIC 1141
            SGI+GE +NMVTMHDVMDAQ+V+DN+RDE+YLRRVIMPLE++LTSYKRLVVKDSAVNAIC
Sbjct: 242  SGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAIC 301

Query: 1140 YGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVV 961
            YGAKLMIPGLLRFEN+I+ G EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVV
Sbjct: 302  YGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVV 361

Query: 960  MDRDTYPRKWGLGPRASMKKKMVAEGLLDKHGKPNEKTPAEWSRNVVLPTGGDTMVAGHA 781
            MDRDTYPRKWGLGPRASMKKK++A+G LDKHGKPNEKTP EWSRNVVLPTGGD ++AG A
Sbjct: 362  MDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAA 421

Query: 780  AATEPIPAXXXXXXXXXXXXXXXXXXXXXXEAPKTEDNNASPAPVPTKKIKVEE 619
            AA   I A                         K +D++ SPAPV TKK K +E
Sbjct: 422  AAPVEIKAEAENGEAGEVRKR------------KHDDSSDSPAPVSTKKSKTKE 463