BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000669
         (3780 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...  1513   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1488   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1474   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1456   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1446   0.0  

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 1513 bits (3916), Expect = 0.0
 Identities = 748/1122 (66%), Positives = 892/1122 (79%), Gaps = 2/1122 (0%)
 Frame = -1

Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427
            MS+T++VSG PS  +A  V+ FLE + G GTV ALKIR+ ++ G   R +A+VQFTTTR 
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250
             E I+  ++  L+YG S L    M+RDI+P+PR  L +++   LHFG Q S E F A W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070
              NV VNFG G+RK+   LSH+  +YKL L +++IWQI+LHRPR +  KYL+IQ++GAPR
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890
            IYE+   SS +++ DP LNYFRD PD+QWVR TDFT S  IG SS++CLELP    L   
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238

Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710
             +NF YY ENE  F+LESG  FS++ +LVPIVGP  G+ LPY++LF+VN LVQNGCLAG 
Sbjct: 239  NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298

Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530
             LD  F+RLV P  +P+  IE ALE+L  LK+CCYEP +W NEQY KY TS    R+   
Sbjct: 299  MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358

Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350
            SLD GLVY+ +V++TP KV+FC P+VN+SNRV+R + E IDNF+RVSF DE+ EK+ STD
Sbjct: 359  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418

Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170
            +SPR +S+NE RR T+IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFAS  GL
Sbjct: 419  VSPRTSSRNELRR-TAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990
            TA  IR WMG FH+IRNVA+YAARLGQSF SS ETL+V  HEIE+IPD+EV   G RY+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810
            SDGIGKIS EFAR+VA KCG  GFTPS+FQIRY GYKGVVAVDPTS  KLSLR+SM KY 
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630
            S NTKLDVL+ SKYQPCFLNRQLI+LLSTLGV DH FE+KQ+EAVDQLD +LTDP  A E
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450
            ALE+MSPGEN ++LKEML+CGY+PD EPFLSMMLQTFRA KLLELR KTRIF+PNGR+MM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKS-IVKGRVIVAKNPCLH 1273
            GCLDE R LE+GQVFV+FS     RF+     +   ++  + +  ++KG V+VAKNPCLH
Sbjct: 718  GCLDETRTLEHGQVFVKFSG---SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774

Query: 1272 PGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQI 1093
            PGD+R+L+AVD+PALHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI
Sbjct: 775  PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834

Query: 1092 DPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIE 913
             PMDYTPEP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA AD+E  KA S+ C+E
Sbjct: 835  SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 912  LARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQ 733
            LAR FSIAVDFPKTGVPA IP+ L  +EYPDFMEK DKP+YESR VIGKLFR VKDIAP+
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 732  TSCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLG 553
            TS I+SFT ++AR+ YD DM++DGFEDYI+DA+YYK  YD+KL + M+YYGIKTEAELL 
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 552  GSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTY 373
            GS MKMSK+F K+RD E I +AVRSLKKE R+WF+EK S    +ADD+ AKASAWYHVTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074

Query: 372  HPDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKRTSNMRKRLS 247
            H +YWGCYNEGM +DHFLSFPWCV DKLI IKR ++ R R S
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRS 1116


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1488 bits (3853), Expect = 0.0
 Identities = 750/1137 (65%), Positives = 883/1137 (77%), Gaps = 12/1137 (1%)
 Frame = -1

Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427
            MS+TIQV G PS VSA  +KEFLE+Y GEGT+ AL+I+Q +S        A VQFT+   
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58

Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250
             E I+    + ++YG + LK   M+ DI+PKPR  L S+D   LHFGCQ+S E F   WK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070
              NV V FG GLRK    LSH   +YKLEL Y++IWQIQL  PR + TK+L+IQ+ GAP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 3069 IYEKLTCSSDDIYGDPDLNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSA 2893
            IYEK      D+   P L+Y F++ PDDQWVR  DFT S  IGQS A+CLELP    L  
Sbjct: 179  IYEK------DV---PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 229

Query: 2892 VRDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAG 2713
             R+NF YY EN+ +F+LESGS +S +L LVPI+GPPQG  LP+ +LFK+N+LVQNGCL+G
Sbjct: 230  FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289

Query: 2712 PTLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARS 2533
            PTLD +FFRLV P+  PI+ IE ALE+L  LK+CCYEP+RWL+EQY  Y   K +  + +
Sbjct: 290  PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPA 348

Query: 2532 TSLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRST 2353
             SLD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST
Sbjct: 349  ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408

Query: 2352 DLSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENG 2173
             +SPR + +    R T +Y+RILS L+NGIVIGDKKF+FLAFSSSQLRDNSAWMFAS  G
Sbjct: 409  VISPRMSKEG---RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465

Query: 2172 LTAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYV 1993
            LTA  IR WMG F +IRNVAKYAARLGQSFSSS+ETL V + EIE IPD+E+      YV
Sbjct: 466  LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525

Query: 1992 FSDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKY 1813
            FSDGIGKIS + A RVA KCG    TPS+FQIRYGGYKGVVAVDPTS  KLSLRKSM KY
Sbjct: 526  FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585

Query: 1812 ISRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMAL 1633
             S NT LDVL+WSKYQP FLNRQLI+LLSTLGVKDH+FEKKQ+ AVDQLD IL DP  A 
Sbjct: 586  ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645

Query: 1632 EALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAM 1453
            EALE+MSPGEN +VLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+M
Sbjct: 646  EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705

Query: 1452 MGCLDENRMLEYGQVFVQFSHISP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCL 1276
            MGCLDE R LEYG+VFVQ S     Q F  +  F  S +  D    I++G+++VAKNPCL
Sbjct: 706  MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDN--FILEGKIVVAKNPCL 763

Query: 1275 HPGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQ 1096
            HPGDVRVL AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPP+Q
Sbjct: 764  HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823

Query: 1095 IDPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACI 916
            I+PMDYTP PT  LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FAD+E +KA  D C 
Sbjct: 824  INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883

Query: 915  ELARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAP 736
            ELA+LFSIAVDFPKTGVPA IP  L VKEYPDFMEK DKPTYES+ VIGKLFR VKDIAP
Sbjct: 884  ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943

Query: 735  QTSCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELL 556
                I+SFT+++AR+SYD DM++ GFEDY+ DA+YYK EYD+KL + MDYYGIKTE+E+L
Sbjct: 944  HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003

Query: 555  GGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVT 376
             GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++  S++  EADD+YAKASAWYHVT
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063

Query: 375  YHPDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR---------TSNMRKRLSEALRL 232
            YHPDYWGCYNEGM +DHFLSFPWCV DKLI  KR          S++ +RLS+ LRL
Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1474 bits (3817), Expect = 0.0
 Identities = 742/1112 (66%), Positives = 870/1112 (78%), Gaps = 1/1112 (0%)
 Frame = -1

Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427
            M +TIQV G+PS+VSA  +KEFLE+Y GEGT+ AL+I+Q KS        A VQFT+ R 
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58

Query: 3426 VETILKSSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWKR 3247
             E I+  ++ L+YG + LK   M+ DI+PKPR  L S+D   LHFG Q+S E F   WK 
Sbjct: 59   AELIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118

Query: 3246 ANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPRI 3067
             NV V FGFGLRK    LSH   +YKLEL  ++IWQIQL  PR +NTK+L+IQ+  AP+I
Sbjct: 119  INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178

Query: 3066 YEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAVR 2887
            YEK   +         L+YF++TPDDQWVR  DFT S  IGQSSA+CLELP    L    
Sbjct: 179  YEKDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFC 229

Query: 2886 DNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGPT 2707
            +NF  Y EN+ +F+LESG+ FS +L LVPIVGPPQG  LP+ +LFK+N+LVQNGCL+GPT
Sbjct: 230  ENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPT 289

Query: 2706 LDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARSTS 2527
            LD  FFR V PQ + I+ IE ALE+L  L++CCYEP+RWL+EQY  Y  SK +  + + S
Sbjct: 290  LDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAIS 348

Query: 2526 LDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTDL 2347
            LD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST +
Sbjct: 349  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 408

Query: 2346 SPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGLT 2167
            SPR +  NE RR T +Y+RILS L+NGIVIGDKKF+FLA SSSQLRDNSAWMFAS  GLT
Sbjct: 409  SPRMS--NEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLT 465

Query: 2166 AGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVFS 1987
            A  IR  MG F +IRNVAKYAARLGQSFSSS+ETL V +HEIE+IPD+E   +G  YVFS
Sbjct: 466  AADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFS 525

Query: 1986 DGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYIS 1807
            DGIGKIS E A RVA KCG    TPS+FQIRYGGYKGVVAVDPTS  KLSLRKSM KY S
Sbjct: 526  DGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 585

Query: 1806 RNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALEA 1627
             NT LDVLSWSKY+PCFLNRQLI+LLSTLGVKDH+FEKKQ+EAVDQLD IL DP  A EA
Sbjct: 586  ENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEA 645

Query: 1626 LEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMMG 1447
            LE+MSPGEN ++LKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+MMG
Sbjct: 646  LELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 705

Query: 1446 CLDENRMLEYGQVFVQFSHISP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270
            CLDE R LEYG+VFVQ S     Q F  +  F  S +  D    I++G+V+VAKNPCLHP
Sbjct: 706  CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDN--FILEGKVVVAKNPCLHP 763

Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090
            GDVR+L AVD+PALHH+VDCVVFPQKG RPHP+ECSGSDLDGDIYFV WDH+LIPPRQI+
Sbjct: 764  GDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQIN 823

Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910
            PMDYTP PT  LDHDV IEEV+EYFTNYI ND LGIIANAHT FAD+E +KA    C EL
Sbjct: 824  PMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKEL 883

Query: 909  ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730
            A+LFSIA++FPKTGVPA IP  LHVKEYPDFMEK +KPTYES+ VIGKLFR VKD+AP  
Sbjct: 884  AKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHN 943

Query: 729  SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550
              ++SFT+++A +SYD DM++DGFEDY+ DA+YYK +YDFKL S MD  GI+TE+E+L G
Sbjct: 944  YDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSG 1003

Query: 549  SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370
            S+MKMSK+FDKR+D E I LAVRSL+KE R WF++  S +   ADD+YA ASAWYHVTYH
Sbjct: 1004 SIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYH 1063

Query: 369  PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR 274
            P YWGCYNEGM  DHFLSFPWCV DKLI IKR
Sbjct: 1064 PYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKR 1095


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1456 bits (3769), Expect = 0.0
 Identities = 721/1112 (64%), Positives = 868/1112 (78%), Gaps = 1/1112 (0%)
 Frame = -1

Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427
            M +TIQV G  S VSA  VK FLE Y G  TV+ALKIRQ K  G   RAFA+VQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250
               I++ ++Q LYYG S LK   ME DIVPKPR  L +++   ++FGCQVS E F   WK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070
              NV +NFG G+RK+E LLS+    YKLELFY++IWQI+L  P S+ +K+L+IQ+FGAPR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890
            IYEK   +S+ ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS + LELP +  L   
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237

Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710
            R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530
             LD  F+RLV P  +   +I+ ALE+L  L++CCYEP RWL E+Y  +  S+    + + 
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350
            SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH  IDNF+R+SF DE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170
            +  R        R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS  GL
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990
            TA  IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V + EI +IPD+E+  +G +YVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810
            SDGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630
            S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D  FEKKQ+E VDQL+ +LTDP  A E
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450
            ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV  GR+MM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270
            GCLDE R L YGQVFVQFS                     +R+ IV+G+VIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090
            GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910
            PMDY+P  T  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE +KA S  C+EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873

Query: 909  ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730
            A+LFSIAVDFPKTGVPA IP  L VKEYPDFMEK DKP+Y+S  VIGKLFR VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933

Query: 729  SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550
              IK  T+E  +R YD DM+++GFEDYI+DA+++K +YD+KL + MDYYG+KTEAE+LGG
Sbjct: 934  CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993

Query: 549  SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370
             +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+   E DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 369  PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR 274
            P YWG YNEGM +DHFLSFPWCV DKLI IK+
Sbjct: 1054 PSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK 1085


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1446 bits (3742), Expect = 0.0
 Identities = 721/1126 (64%), Positives = 869/1126 (77%), Gaps = 1/1126 (0%)
 Frame = -1

Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427
            M +TIQV G  S VSA  VK FLE Y G  TV+ALKIRQ K  G   RAFA+VQFT +  
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250
               I++ ++Q LYYG S LK   ME DIVPKPR  L +++   ++F C VS E F   WK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070
              NV +NFG G+RK+E LLS+    YKLELFY++IWQI+L  P S+ +K+L+IQ+FGAPR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890
            IYEK   +S+ ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS +CLELP +  L   
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710
            R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530
             LD  F+RLV P  +   +I+ ALE+L  L++CCYEP RWL E+Y  +  S+    + + 
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350
            SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH  IDNF+R+SF DE+ EK+ ST+
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170
            +  R        R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS  GL
Sbjct: 418  VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470

Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990
            TA  IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V + EI +IPD+E+  +G +YVF
Sbjct: 471  TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530

Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810
             DGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS  KLSLRKSM KY 
Sbjct: 531  PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590

Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630
            S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D+ FEKKQ+E VDQL+ +LTDP  A E
Sbjct: 591  SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650

Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450
            ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV  GR+MM
Sbjct: 651  ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710

Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270
            GCLDE R L YGQVFVQFS                     +R+ IV+G+VIVAKNPCLHP
Sbjct: 711  GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753

Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090
            GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID
Sbjct: 754  GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813

Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910
            PMDY+P  T  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE  KA S  C+EL
Sbjct: 814  PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873

Query: 909  ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730
            A+LFSIAVDFPKTGVPA IP  L VKE+PDFMEK DKP+Y+S  VIGKLFR VK++AP  
Sbjct: 874  AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933

Query: 729  SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550
              IK  T+E  +R YD DM+++GF DYI+DA++YK +YD+KL + MDYYG+KTEAE+L G
Sbjct: 934  CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993

Query: 549  SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370
             +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+   E DD YAKASAWY+VTYH
Sbjct: 994  GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053

Query: 369  PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKRTSNMRKRLSEALRL 232
              YWG YNEGM +DHFLSFPWCV DKLI IK+    +  L EAL L
Sbjct: 1054 HSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKE---KAALREALDL 1096