BLASTX nr result
ID: Coptis25_contig00000669
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00000669 (3780 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho... 1513 0.0 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1488 0.0 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1474 0.0 gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1456 0.0 gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1446 0.0 >ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1133 Score = 1513 bits (3916), Expect = 0.0 Identities = 748/1122 (66%), Positives = 892/1122 (79%), Gaps = 2/1122 (0%) Frame = -1 Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427 MS+T++VSG PS +A V+ FLE + G GTV ALKIR+ ++ G R +A+VQFTTTR Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58 Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250 E I+ ++ L+YG S L M+RDI+P+PR L +++ LHFG Q S E F A W Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118 Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070 NV VNFG G+RK+ LSH+ +YKL L +++IWQI+LHRPR + KYL+IQ++GAPR Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178 Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890 IYE+ SS +++ DP LNYFRD PD+QWVR TDFT S IG SS++CLELP L Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238 Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710 +NF YY ENE F+LESG FS++ +LVPIVGP G+ LPY++LF+VN LVQNGCLAG Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298 Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530 LD F+RLV P +P+ IE ALE+L LK+CCYEP +W NEQY KY TS R+ Sbjct: 299 MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358 Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350 SLD GLVY+ +V++TP KV+FC P+VN+SNRV+R + E IDNF+RVSF DE+ EK+ STD Sbjct: 359 SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418 Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170 +SPR +S+NE RR T+IY RILSTL+NGIVIGDKKFEFLAFSSSQLR+NS WMFAS GL Sbjct: 419 VSPRTSSRNELRR-TAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477 Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990 TA IR WMG FH+IRNVA+YAARLGQSF SS ETL+V HEIE+IPD+EV G RY+F Sbjct: 478 TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537 Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810 SDGIGKIS EFAR+VA KCG GFTPS+FQIRY GYKGVVAVDPTS KLSLR+SM KY Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597 Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630 S NTKLDVL+ SKYQPCFLNRQLI+LLSTLGV DH FE+KQ+EAVDQLD +LTDP A E Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657 Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450 ALE+MSPGEN ++LKEML+CGY+PD EPFLSMMLQTFRA KLLELR KTRIF+PNGR+MM Sbjct: 658 ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717 Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKS-IVKGRVIVAKNPCLH 1273 GCLDE R LE+GQVFV+FS RF+ + ++ + + ++KG V+VAKNPCLH Sbjct: 718 GCLDETRTLEHGQVFVKFSG---SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774 Query: 1272 PGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQI 1093 PGD+R+L+AVD+PALHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI Sbjct: 775 PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834 Query: 1092 DPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIE 913 PMDYTPEP + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA AD+E KA S+ C+E Sbjct: 835 SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894 Query: 912 LARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQ 733 LAR FSIAVDFPKTGVPA IP+ L +EYPDFMEK DKP+YESR VIGKLFR VKDIAP+ Sbjct: 895 LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954 Query: 732 TSCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLG 553 TS I+SFT ++AR+ YD DM++DGFEDYI+DA+YYK YD+KL + M+YYGIKTEAELL Sbjct: 955 TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014 Query: 552 GSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTY 373 GS MKMSK+F K+RD E I +AVRSLKKE R+WF+EK S +ADD+ AKASAWYHVTY Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074 Query: 372 HPDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKRTSNMRKRLS 247 H +YWGCYNEGM +DHFLSFPWCV DKLI IKR ++ R R S Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRS 1116 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 1488 bits (3853), Expect = 0.0 Identities = 750/1137 (65%), Positives = 883/1137 (77%), Gaps = 12/1137 (1%) Frame = -1 Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427 MS+TIQV G PS VSA +KEFLE+Y GEGT+ AL+I+Q +S A VQFT+ Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGAS--MTHAKVQFTSFEL 58 Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250 E I+ + ++YG + LK M+ DI+PKPR L S+D LHFGCQ+S E F WK Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118 Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070 NV V FG GLRK LSH +YKLEL Y++IWQIQL PR + TK+L+IQ+ GAP+ Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178 Query: 3069 IYEKLTCSSDDIYGDPDLNY-FRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSA 2893 IYEK D+ P L+Y F++ PDDQWVR DFT S IGQS A+CLELP L Sbjct: 179 IYEK------DV---PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPN 229 Query: 2892 VRDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAG 2713 R+NF YY EN+ +F+LESGS +S +L LVPI+GPPQG LP+ +LFK+N+LVQNGCL+G Sbjct: 230 FRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSG 289 Query: 2712 PTLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARS 2533 PTLD +FFRLV P+ PI+ IE ALE+L LK+CCYEP+RWL+EQY Y K + + + Sbjct: 290 PTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPA 348 Query: 2532 TSLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRST 2353 SLD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST Sbjct: 349 ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408 Query: 2352 DLSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENG 2173 +SPR + + R T +Y+RILS L+NGIVIGDKKF+FLAFSSSQLRDNSAWMFAS G Sbjct: 409 VISPRMSKEG---RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPG 465 Query: 2172 LTAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYV 1993 LTA IR WMG F +IRNVAKYAARLGQSFSSS+ETL V + EIE IPD+E+ YV Sbjct: 466 LTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYV 525 Query: 1992 FSDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKY 1813 FSDGIGKIS + A RVA KCG TPS+FQIRYGGYKGVVAVDPTS KLSLRKSM KY Sbjct: 526 FSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKY 585 Query: 1812 ISRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMAL 1633 S NT LDVL+WSKYQP FLNRQLI+LLSTLGVKDH+FEKKQ+ AVDQLD IL DP A Sbjct: 586 ESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQ 645 Query: 1632 EALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAM 1453 EALE+MSPGEN +VLKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+M Sbjct: 646 EALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSM 705 Query: 1452 MGCLDENRMLEYGQVFVQFSHISP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCL 1276 MGCLDE R LEYG+VFVQ S Q F + F S + D I++G+++VAKNPCL Sbjct: 706 MGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDN--FILEGKIVVAKNPCL 763 Query: 1275 HPGDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQ 1096 HPGDVRVL AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPP+Q Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823 Query: 1095 IDPMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACI 916 I+PMDYTP PT LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FAD+E +KA D C Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883 Query: 915 ELARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAP 736 ELA+LFSIAVDFPKTGVPA IP L VKEYPDFMEK DKPTYES+ VIGKLFR VKDIAP Sbjct: 884 ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943 Query: 735 QTSCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELL 556 I+SFT+++AR+SYD DM++ GFEDY+ DA+YYK EYD+KL + MDYYGIKTE+E+L Sbjct: 944 HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003 Query: 555 GGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVT 376 GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++ S++ EADD+YAKASAWYHVT Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063 Query: 375 YHPDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR---------TSNMRKRLSEALRL 232 YHPDYWGCYNEGM +DHFLSFPWCV DKLI KR S++ +RLS+ LRL Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 1474 bits (3817), Expect = 0.0 Identities = 742/1112 (66%), Positives = 870/1112 (78%), Gaps = 1/1112 (0%) Frame = -1 Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427 M +TIQV G+PS+VSA +KEFLE+Y GEGT+ AL+I+Q KS A VQFT+ R Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVS--MTHAKVQFTSLRL 58 Query: 3426 VETILKSSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWKR 3247 E I+ ++ L+YG + LK M+ DI+PKPR L S+D LHFG Q+S E F WK Sbjct: 59 AELIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118 Query: 3246 ANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPRI 3067 NV V FGFGLRK LSH +YKLEL ++IWQIQL PR +NTK+L+IQ+ AP+I Sbjct: 119 INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178 Query: 3066 YEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAVR 2887 YEK + L+YF++TPDDQWVR DFT S IGQSSA+CLELP L Sbjct: 179 YEKDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFC 229 Query: 2886 DNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGPT 2707 +NF Y EN+ +F+LESG+ FS +L LVPIVGPPQG LP+ +LFK+N+LVQNGCL+GPT Sbjct: 230 ENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPT 289 Query: 2706 LDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARSTS 2527 LD FFR V PQ + I+ IE ALE+L L++CCYEP+RWL+EQY Y SK + + + S Sbjct: 290 LDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAIS 348 Query: 2526 LDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTDL 2347 LD GLVY+RRV++TP KVYFC P+VN+SNRV+R++ E IDNF+RVSF DE+ EK+ ST + Sbjct: 349 LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 408 Query: 2346 SPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGLT 2167 SPR + NE RR T +Y+RILS L+NGIVIGDKKF+FLA SSSQLRDNSAWMFAS GLT Sbjct: 409 SPRMS--NEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLT 465 Query: 2166 AGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVFS 1987 A IR MG F +IRNVAKYAARLGQSFSSS+ETL V +HEIE+IPD+E +G YVFS Sbjct: 466 AADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFS 525 Query: 1986 DGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYIS 1807 DGIGKIS E A RVA KCG TPS+FQIRYGGYKGVVAVDPTS KLSLRKSM KY S Sbjct: 526 DGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 585 Query: 1806 RNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALEA 1627 NT LDVLSWSKY+PCFLNRQLI+LLSTLGVKDH+FEKKQ+EAVDQLD IL DP A EA Sbjct: 586 ENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEA 645 Query: 1626 LEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMMG 1447 LE+MSPGEN ++LKEMLMCGYKPD EPFLSMMLQTFRA KLLELR KTRIFVPNGR+MMG Sbjct: 646 LELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 705 Query: 1446 CLDENRMLEYGQVFVQFSHISP-QRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270 CLDE R LEYG+VFVQ S Q F + F S + D I++G+V+VAKNPCLHP Sbjct: 706 CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDN--FILEGKVVVAKNPCLHP 763 Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090 GDVR+L AVD+PALHH+VDCVVFPQKG RPHP+ECSGSDLDGDIYFV WDH+LIPPRQI+ Sbjct: 764 GDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQIN 823 Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910 PMDYTP PT LDHDV IEEV+EYFTNYI ND LGIIANAHT FAD+E +KA C EL Sbjct: 824 PMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKEL 883 Query: 909 ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730 A+LFSIA++FPKTGVPA IP LHVKEYPDFMEK +KPTYES+ VIGKLFR VKD+AP Sbjct: 884 AKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHN 943 Query: 729 SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550 ++SFT+++A +SYD DM++DGFEDY+ DA+YYK +YDFKL S MD GI+TE+E+L G Sbjct: 944 YDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSG 1003 Query: 549 SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370 S+MKMSK+FDKR+D E I LAVRSL+KE R WF++ S + ADD+YA ASAWYHVTYH Sbjct: 1004 SIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYH 1063 Query: 369 PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR 274 P YWGCYNEGM DHFLSFPWCV DKLI IKR Sbjct: 1064 PYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKR 1095 >gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 1456 bits (3769), Expect = 0.0 Identities = 721/1112 (64%), Positives = 868/1112 (78%), Gaps = 1/1112 (0%) Frame = -1 Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427 M +TIQV G S VSA VK FLE Y G TV+ALKIRQ K G RAFA+VQFT + Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57 Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250 I++ ++Q LYYG S LK ME DIVPKPR L +++ ++FGCQVS E F WK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117 Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070 NV +NFG G+RK+E LLS+ YKLELFY++IWQI+L P S+ +K+L+IQ+FGAPR Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177 Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890 IYEK +S+ ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS + LELP + L Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237 Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710 R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297 Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530 LD F+RLV P + +I+ ALE+L L++CCYEP RWL E+Y + S+ + + Sbjct: 298 ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357 Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350 SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH IDNF+R+SF DE+ EK+ ST+ Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417 Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170 + R R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS GL Sbjct: 418 VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470 Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990 TA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V + EI +IPD+E+ +G +YVF Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530 Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810 SDGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS KLSLRKSM KY Sbjct: 531 SDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590 Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630 S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D FEKKQ+E VDQL+ +LTDP A E Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650 Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450 ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV GR+MM Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710 Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270 GCLDE R L YGQVFVQFS +R+ IV+G+VIVAKNPCLHP Sbjct: 711 GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753 Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090 GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID Sbjct: 754 GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813 Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910 PMDY+P T LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE +KA S C+EL Sbjct: 814 PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLEL 873 Query: 909 ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730 A+LFSIAVDFPKTGVPA IP L VKEYPDFMEK DKP+Y+S VIGKLFR VK++AP Sbjct: 874 AKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNE 933 Query: 729 SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550 IK T+E +R YD DM+++GFEDYI+DA+++K +YD+KL + MDYYG+KTEAE+LGG Sbjct: 934 CSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGG 993 Query: 549 SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370 +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+ E DD YAKASAWY+VTYH Sbjct: 994 GIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053 Query: 369 PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKR 274 P YWG YNEGM +DHFLSFPWCV DKLI IK+ Sbjct: 1054 PSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKK 1085 >gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 1446 bits (3742), Expect = 0.0 Identities = 721/1126 (64%), Positives = 869/1126 (77%), Gaps = 1/1126 (0%) Frame = -1 Query: 3606 MSRTIQVSGLPSHVSAQVVKEFLERYAGEGTVFALKIRQSKSKGPNPRAFAVVQFTTTRC 3427 M +TIQV G S VSA VK FLE Y G TV+ALKIRQ K G RAFA+VQFT + Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57 Query: 3426 VETILK-SSQCLYYGVSRLKVHNMERDIVPKPREMLLSLDVPVLHFGCQVSGESFKAFWK 3250 I++ ++Q LYYG S LK ME DIVPKPR L +++ ++F C VS E F WK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117 Query: 3249 RANVVVNFGFGLRKVELLLSHSGVDYKLELFYDSIWQIQLHRPRSRNTKYLVIQVFGAPR 3070 NV +NFG G+RK+E LLS+ YKLELFY++IWQI+L P S+ +K+L+IQ+FGAPR Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177 Query: 3069 IYEKLTCSSDDIYGDPDLNYFRDTPDDQWVRATDFTTSSCIGQSSAICLELPQSCGLSAV 2890 IYEK +S+ ++ DP LNYF+D PDDQWVR TDFT S+CIGQSS +CLELP + L Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237 Query: 2889 RDNFHYYSENEDRFMLESGSPFSQSLELVPIVGPPQGLELPYSVLFKVNSLVQNGCLAGP 2710 R+NF YY ENE R +LESGS +S +L LVPIV P + ++LP+ +LFKVN LVQNGC+ GP Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297 Query: 2709 TLDIAFFRLVHPQYVPIAHIERALERLCQLKDCCYEPIRWLNEQYLKYRTSKTLIRARST 2530 LD F+RLV P + +I+ ALE+L L++CCYEP RWL E+Y + S+ + + Sbjct: 298 ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357 Query: 2529 SLDDGLVYIRRVRVTPSKVYFCEPDVNLSNRVIRHFHEYIDNFIRVSFYDEDWEKMRSTD 2350 SLD+GLVY+RRV++TPS+VYFC P++N+SNRV+R FH IDNF+R+SF DE+ EK+ ST+ Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417 Query: 2349 LSPRATSKNEDRRHTSIYKRILSTLRNGIVIGDKKFEFLAFSSSQLRDNSAWMFASENGL 2170 + R R T IYKRILSTLRNGIVIG+K+FEFLAFSSSQLR+NSAWMFAS GL Sbjct: 418 VQARG-------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGL 470 Query: 2169 TAGTIRKWMGHFHEIRNVAKYAARLGQSFSSSRETLTVDRHEIEVIPDVEVGSNGKRYVF 1990 TA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V + EI +IPD+E+ +G +YVF Sbjct: 471 TAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVF 530 Query: 1989 SDGIGKISVEFARRVAKKCGVNGFTPSSFQIRYGGYKGVVAVDPTSVMKLSLRKSMSKYI 1810 DGIGKIS EFA++VA KC + G TPS+FQIR GG+KGVVA+DPTS KLSLRKSM KY Sbjct: 531 PDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590 Query: 1809 SRNTKLDVLSWSKYQPCFLNRQLISLLSTLGVKDHIFEKKQKEAVDQLDLILTDPSMALE 1630 S NTKLDVL+WSKYQPCFLNRQLI+LLSTLGV D+ FEKKQ+E VDQL+ +LTDP A E Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQE 650 Query: 1629 ALEVMSPGENVSVLKEMLMCGYKPDIEPFLSMMLQTFRALKLLELRKKTRIFVPNGRAMM 1450 ALE+MSPGEN ++LKEML+CGYKPD EPFLSMML+TFRA KLLELR K RIFV GR+MM Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710 Query: 1449 GCLDENRMLEYGQVFVQFSHISPQRFQGNTPFTTSINKSDQRKSIVKGRVIVAKNPCLHP 1270 GCLDE R L YGQVFVQFS +R+ IV+G+VIVAKNPCLHP Sbjct: 711 GCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHP 753 Query: 1269 GDVRVLQAVDIPALHHLVDCVVFPQKGARPHPNECSGSDLDGDIYFVSWDHELIPPRQID 1090 GDVRVL+AV++P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QID Sbjct: 754 GDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQID 813 Query: 1089 PMDYTPEPTVTLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIEL 910 PMDY+P T LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFADRE KA S C+EL Sbjct: 814 PMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLEL 873 Query: 909 ARLFSIAVDFPKTGVPAVIPTRLHVKEYPDFMEKLDKPTYESRRVIGKLFRAVKDIAPQT 730 A+LFSIAVDFPKTGVPA IP L VKE+PDFMEK DKP+Y+S VIGKLFR VK++AP Sbjct: 874 AKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNE 933 Query: 729 SCIKSFTKEIARRSYDRDMDIDGFEDYIEDAYYYKGEYDFKLASRMDYYGIKTEAELLGG 550 IK T+E +R YD DM+++GF DYI+DA++YK +YD+KL + MDYYG+KTEAE+L G Sbjct: 934 CSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSG 993 Query: 549 SVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEADDIYAKASAWYHVTYH 370 +MKMS++F K+RD E I +AVRSL+KE R+WF+EK S+ E DD YAKASAWY+VTYH Sbjct: 994 GIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYH 1053 Query: 369 PDYWGCYNEGMGKDHFLSFPWCVSDKLIFIKRTSNMRKRLSEALRL 232 YWG YNEGM +DHFLSFPWCV DKLI IK+ + L EAL L Sbjct: 1054 HSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKE---KAALREALDL 1096