BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000658
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    68   5e-19
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    68   5e-19
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    68   1e-18
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    63   2e-18
gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japo...    64   5e-18

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 67.8 bits (164), Expect(2) = 5e-19
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = +2

Query: 479 GSPFGYFKPSRGVLQGDPL*PYIFILCAKNLSLNLIRQQELQGIQGIRILKNSAPLSHMM 658
           GSP G+ KPSRG+ QGDP+ P++FILC + L   L   +    IQG++I + S   SH++
Sbjct: 568 GSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLL 627

Query: 659 YADDVIISSFYLIWFIKADP 718
           +ADD        ++F KADP
Sbjct: 628 FADD-------SLFFCKADP 640



 Score = 53.5 bits (127), Expect(2) = 5e-19
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +3

Query: 336 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 476
           +K D+ KAYD++EW F++  + K GF   W++ I+FC+ S+++ I+L
Sbjct: 520 IKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILL 566


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 67.8 bits (164), Expect(2) = 5e-19
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = +2

Query: 479 GSPFGYFKPSRGVLQGDPL*PYIFILCAKNLSLNLIRQQELQGIQGIRILKNSAPLSHMM 658
           GSP G+ KPSRG+ QGDP+ P++FILC + L   L   +    IQG++I + S   SH++
Sbjct: 202 GSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLL 261

Query: 659 YADDVIISSFYLIWFIKADP 718
           +ADD        ++F KADP
Sbjct: 262 FADD-------SLFFCKADP 274



 Score = 53.5 bits (127), Expect(2) = 5e-19
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +3

Query: 336 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 476
           +K D+ KAYD++EW F++  + K GF   W++ I+FC+ S+++ I+L
Sbjct: 154 IKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILL 200


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 67.8 bits (164), Expect(2) = 1e-18
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = +2

Query: 479  GSPFGYFKPSRGVLQGDPL*PYIFILCAKNLSLNLIRQQELQGIQGIRILKNSAPLSHMM 658
            G+PFG  KPSRG+ QGDP+ PY+F++ A+ LS  + + +  Q I G+ I + +  +SH+ 
Sbjct: 909  GAPFGKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAEREQQIHGVAIARGAPSVSHLF 968

Query: 659  YADDVII 679
            YADD ++
Sbjct: 969  YADDSLL 975



 Score = 52.0 bits (123), Expect(2) = 1e-18
 Identities = 22/47 (46%), Positives = 35/47 (74%)
 Frame = +3

Query: 336  LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 476
            LKLD+ KAYD++EW F+Q  ++  GF   ++  IM CV+S+T+S++L
Sbjct: 861  LKLDMTKAYDRVEWGFLQRMMEVMGFPDRFVFLIMDCVKSVTYSVLL 907


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 62.8 bits (151), Expect(2) = 2e-18
 Identities = 32/81 (39%), Positives = 50/81 (61%)
 Frame = +2

Query: 479 GSPFGYFKPSRGVLQGDPL*PYIFILCAKNLSLNLIRQQELQGIQGIRILKNSAPLSHMM 658
           G+P G   P+RG+ QGDPL P +FILC + LS    R Q L+ + G+R+  N   ++H++
Sbjct: 516 GTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLL 575

Query: 659 YADDVIISSFYLIWFIKADPD 721
           +ADD        ++F K+DP+
Sbjct: 576 FADDT-------MFFSKSDPE 589



 Score = 56.2 bits (134), Expect(2) = 2e-18
 Identities = 20/47 (42%), Positives = 37/47 (78%)
 Frame = +3

Query: 336 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 476
           +K D+ KAYD++EW F++  L++FGF+S WI+ ++ CV S+++S ++
Sbjct: 468 VKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLI 514


>gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japonica Group]
          Length = 1049

 Score = 63.9 bits (154), Expect(2) = 5e-18
 Identities = 32/72 (44%), Positives = 46/72 (63%)
 Frame = +2

Query: 503 PSRGVLQGDPL*PYIFILCAKNLSLNLIRQQELQGIQGIRILKNSAPLSHMMYADDVIIS 682
           PSRG+ QGDP+ PY+F+LC + LS  L R++ L  + GIR      P+SH+++ADD    
Sbjct: 368 PSRGIRQGDPVSPYLFLLCTEGLSCLLQRKESLGLLHGIRNGHQGPPISHLLFADD---- 423

Query: 683 SFYLIWFIKADP 718
               I+F K+DP
Sbjct: 424 ---SIFFAKSDP 432



 Score = 53.9 bits (128), Expect(2) = 5e-18
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +3

Query: 330 YNLKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIMLMARL 488
           + LK+D+ KAYD+IEW ++Q  L K GF   W+  +M CV S+ +++ +   L
Sbjct: 310 FALKIDMMKAYDRIEWSYLQGCLTKLGFAPAWVSSVMRCVTSVRYAVRINGEL 362