BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000598
         (2755 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   434   e-119
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   434   e-119
ref|XP_002277679.1| PREDICTED: transcription initiation factor I...   430   e-117
ref|XP_002513521.1| transcription initiation factor iib, putativ...   429   e-117
ref|XP_002534470.1| transcription initiation factor iib, putativ...   424   e-116

>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
            gi|296088031|emb|CBI35314.3| unnamed protein product
            [Vitis vinifera]
          Length = 312

 Score =  434 bits (1116), Expect = e-119
 Identities = 222/288 (77%), Positives = 237/288 (82%)
 Frame = -2

Query: 2664 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 2485
            D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 2484 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXSRWQNRGSNPDRSLIMAFKSIAVMSDRLN 2305
            SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63   SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 2304 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 2125
            LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 2124 KEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEEL 1945
            KE+GRAKEYIVKQLE E GQSVEMG IHAGDF+RRFCS+LGM NQ VKAAQEAVQKSEE 
Sbjct: 181  KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240

Query: 1944 DIRRXXXXXXXXXXXXXSQLSDERKLLKD*PYFTKNTEGRIYLKRRDI 1801
            DIRR             +QLSDE+KLL+D    T   EG I    +D+
Sbjct: 241  DIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDL 288


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
            gi|297739630|emb|CBI29812.3| unnamed protein product
            [Vitis vinifera]
          Length = 312

 Score =  434 bits (1116), Expect = e-119
 Identities = 222/288 (77%), Positives = 237/288 (82%)
 Frame = -2

Query: 2664 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 2485
            D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 2484 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXSRWQNRGSNPDRSLIMAFKSIAVMSDRLN 2305
            SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63   SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 2304 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 2125
            LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 2124 KEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEEL 1945
            KE+GRAKEYIVKQLE E GQSVEMG IHAGDF+RRFCS+LGM NQ VKAAQEAVQKSEE 
Sbjct: 181  KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240

Query: 1944 DIRRXXXXXXXXXXXXXSQLSDERKLLKD*PYFTKNTEGRIYLKRRDI 1801
            DIRR             +QLSDE+KLL+D    T   EG I    +D+
Sbjct: 241  DIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDL 288


>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
            gi|297734946|emb|CBI17180.3| unnamed protein product
            [Vitis vinifera]
          Length = 314

 Score =  430 bits (1105), Expect = e-117
 Identities = 218/288 (75%), Positives = 235/288 (81%)
 Frame = -2

Query: 2664 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 2485
            D+YC +CK+ TEVV+DHSAGDTVCSECGLVLEAHSIDE SEWRTFANES DNDP RVGGP
Sbjct: 3    DTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVGGP 62

Query: 2484 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXSRWQNRGSNPDRSLIMAFKSIAVMSDRLN 2305
            SNPLL DGGLST+ISKP+              RWQNRGSNPDRSLI AFK+IA M DRL 
Sbjct: 63   SNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDRLG 122

Query: 2304 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 2125
            LVATIKD ANEIYKKVEDQK +RGRNQDAILAAC+YIACRQEDKPRTVKEICSVANGATK
Sbjct: 123  LVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATK 182

Query: 2124 KEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEEL 1945
            KE+GRAKEYIVKQLEVEMGQS+EMG IHAGDFLRRFCSHLGM NQ+VKAAQEAVQKSEEL
Sbjct: 183  KEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEEL 242

Query: 1944 DIRRXXXXXXXXXXXXXSQLSDERKLLKD*PYFTKNTEGRIYLKRRDI 1801
            DIRR             +QLSD++KLLKD    T   EG I    +D+
Sbjct: 243  DIRRSPISVAAAVIYMITQLSDDKKLLKDISLATGVAEGTIRNSYKDL 290


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
            gi|223547429|gb|EEF48924.1| transcription initiation
            factor iib, putative [Ricinus communis]
          Length = 312

 Score =  429 bits (1102), Expect = e-117
 Identities = 220/288 (76%), Positives = 236/288 (81%)
 Frame = -2

Query: 2664 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 2485
            D+YC DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANES DNDP RVGGP
Sbjct: 3    DTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVGGP 62

Query: 2484 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXSRWQNRGSNPDRSLIMAFKSIAVMSDRLN 2305
            SNPLL DGGLSTVISKP               RWQNRGSNPDRSLI AFK+IA MSDRL 
Sbjct: 63   SNPLLADGGLSTVISKPTGASGDFLTSSLG--RWQNRGSNPDRSLIQAFKTIATMSDRLG 120

Query: 2304 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 2125
            LVATIKDRANEIYKKVEDQK +RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 2124 KEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEEL 1945
            KE+GRAKEYIVKQLEVE+GQS+EMG IHAGDFLRRFCSHLGM NQ+VKAAQEAV+KSEEL
Sbjct: 181  KEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEEL 240

Query: 1944 DIRRXXXXXXXXXXXXXSQLSDERKLLKD*PYFTKNTEGRIYLKRRDI 1801
            DIRR             +QLS+E+KLLKD    T   EG I    +D+
Sbjct: 241  DIRRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDL 288


>ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
            gi|223525233|gb|EEF27913.1| transcription initiation
            factor iib, putative [Ricinus communis]
          Length = 312

 Score =  424 bits (1090), Expect = e-116
 Identities = 216/288 (75%), Positives = 237/288 (82%)
 Frame = -2

Query: 2664 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 2485
            D+YC+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3    DAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 2484 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXSRWQNRGSNPDRSLIMAFKSIAVMSDRLN 2305
            +NPLL DGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63   TNPLLADGGLSTVIAKPNGASGEFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 2304 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 2125
            LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 2124 KEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQKSEEL 1945
            KE+GRAKEYIVKQL +E GQSVEMG IHAGDF+RRFCS+LGM NQ++KAAQEAVQKSEE 
Sbjct: 181  KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEF 240

Query: 1944 DIRRXXXXXXXXXXXXXSQLSDERKLLKD*PYFTKNTEGRIYLKRRDI 1801
            DIRR             SQLSD++KLL+D  + T   EG I    +D+
Sbjct: 241  DIRRSPISIAAAVIYIISQLSDDKKLLRDISHATGVAEGTIRNSYKDL 288