BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000544
         (1363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...    80   2e-12
sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carbo...    80   2e-12
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...    79   2e-12
gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...    79   2e-12
sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carbox...    79   4e-12

>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
            [Mesembryanthemum crystallinum]
          Length = 180

 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 39/55 (70%), Positives = 45/55 (81%)
 Frame = -3

Query: 1316 MRLASINNCATPAQASMVAPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQFY 1152
            M  A++    TPAQASMVAPFTGLKS SAFPVT+K NDITSI+SNGG+V CMQ +
Sbjct: 5    MSNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVW 59


>sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
            chloroplastic; Short=RuBisCO small subunit 2; Flags:
            Precursor gi|304444|gb|AAA03694.1|
            ribulose-1,5-bisphosphate carboxylase/oxygenase small
            subunit [Mesembryanthemum crystallinum]
          Length = 180

 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 39/55 (70%), Positives = 45/55 (81%)
 Frame = -3

Query: 1316 MRLASINNCATPAQASMVAPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQFY 1152
            M  A++    TPAQASMVAPFTGLKS SAFPVT+K NDITSI+SNGG+V CMQ +
Sbjct: 5    MSNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVW 59


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Panax
            ginseng]
          Length = 183

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = -3

Query: 1289 ATPAQASMVAPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQFY 1152
            A PAQASMVAPFTGLKST+AFPVTRKVNDITS+ SNGG+V CM+ +
Sbjct: 17   AVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVW 62


>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
            subunit [Aralia elata]
          Length = 183

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 37/46 (80%), Positives = 42/46 (91%)
 Frame = -3

Query: 1289 ATPAQASMVAPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQFY 1152
            A PAQASMVAPFTGLKST+AFPVTRKVNDITS+ SNGG+V CM+ +
Sbjct: 17   AAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVW 62


>sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carboxylase small chain,
            chloroplastic; Short=RuBisCO small subunit; Flags:
            Precursor gi|450505|emb|CAA38026.1| ribulose bisphosphate
            carboxylase [Gossypium hirsutum]
            gi|371942044|gb|AEX60834.1| ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit [Gossypium hirsutum]
            gi|406366448|gb|AFS41721.1| ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit (chloroplast)
            [Gossypium arboreum] gi|406366458|gb|AFS41726.1|
            ribulose-1,5-bisphosphate carboxylase/oxygenase small
            subunit (chloroplast) [Gossypium hirsutum]
            gi|406366488|gb|AFS41741.1| ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit (chloroplast)
            [Gossypium tomentosum] gi|406366504|gb|AFS41749.1|
            ribulose-1,5-bisphosphate carboxylase/oxygenase small
            subunit (chloroplast) [Gossypium mustelinum]
            gi|406366516|gb|AFS41755.1| ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit (chloroplast)
            [Gossypium darwinii]
          Length = 182

 Score = 78.6 bits (192), Expect = 4e-12
 Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 1/49 (2%)
 Frame = -3

Query: 1295 NCATPAQASMVAPFTGLKSTSAFPVTRKV-NDITSISSNGGKVSCMQFY 1152
            NC++PAQA+MVAPFTGLKS SAFPVTRK  NDITS++SNGG+V CMQ +
Sbjct: 15   NCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVW 63