BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000409
         (1707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003563838.1| PREDICTED: 50S ribosomal protein L1-like [Br...   369   1e-99
gb|AFW86742.1| 50S ribosomal protein L1 [Zea mays]                    368   3e-99
ref|NP_001149141.1| LOC100282763 [Zea mays] gi|195625038|gb|ACG3...   366   1e-98
gb|EEE65850.1| hypothetical protein OsJ_21625 [Oryza sativa Japo...   357   4e-96
gb|EEC80778.1| hypothetical protein OsI_23301 [Oryza sativa Indi...   357   4e-96

>ref|XP_003563838.1| PREDICTED: 50S ribosomal protein L1-like [Brachypodium distachyon]
          Length = 405

 Score =  369 bits (948), Expect = 1e-99
 Identities = 213/395 (53%), Positives = 253/395 (64%), Gaps = 38/395 (9%)
 Frame = +3

Query: 156  FSSSSQTTPPPLNEDQNSQSRIHIPIIKPVSYAPKPKIINPPEPTQNVE----------- 302
            FS SS + PPP               IKPVSYAPKP+   PPE T   E           
Sbjct: 27   FSDSSTSAPPP---------------IKPVSYAPKPQA--PPEETSAAEAPSASPDSQFP 69

Query: 303  ----PTQQSSASAWTREDFRYVKGV-----PSMHPVRVAPLPXXXXXXXXXNDA------ 437
                P QQ     +TR++ R+VK       P  +P RV PLP          +       
Sbjct: 70   PPRRPQQQPPPPQFTRQEMRFVKDAGPAIAPVSYPSRVVPLPDDHPADEGAGEGAVEEGL 129

Query: 438  ----NKIQMR----RRVISRTEPLQPVLPFPTLIKVEKKKPKTVLDLQEAIKEVKANA-- 587
                 +I+M     RR I   +  +  +P+PTLI V K+  K  +DL +A++E+K++A  
Sbjct: 130  RGEGERIEMEVARARRSIFGVQVEEETVPYPTLIPVVKRPQKVAIDLVDALREIKSSANE 189

Query: 588  -ERKFDETVEAHVILGVDPRRGDQMVRGAATLPHGTGKTVRIAVFXXXXXXXXXXXXXXX 764
             +R F ETVEAHV+LGVDPRRGDQMVRGA TLPHGTGKTVR+AVF               
Sbjct: 190  KKRNFTETVEAHVMLGVDPRRGDQMVRGAITLPHGTGKTVRVAVFAEGPAAEEAKAAGAD 249

Query: 765  XXXXXXXXXXXXKGG-KLNFDKCISTPIFMPRLSKIARILGPRGLMPNNKLGSLTNDVGG 941
                        KGG KL+FDKCI+TP+FMPRLSK+ARILGPRGLMPN KLGS+TNDV G
Sbjct: 250  VVGGDELIEEIRKGGGKLSFDKCIATPMFMPRLSKVARILGPRGLMPNPKLGSVTNDVSG 309

Query: 942  AVRAAKRGRVDFKIDKTAIVHVGLGKVSFTEDTLRENVGAFVNALLLAKPVGLKKTSKYV 1121
            AV+AAK GRVDFKIDKTAIVHVGLGKV+F+E++LREN+GAFVNALLLAKPVGLKKTSKYV
Sbjct: 310  AVKAAKSGRVDFKIDKTAIVHVGLGKVNFSEESLRENIGAFVNALLLAKPVGLKKTSKYV 369

Query: 1122 GYVKSFSLCSTMGPAFPVSIQSLSLAADHYNKMQL 1226
            GYVK F+L STMGP FPV+I SLS AADHYNK+Q+
Sbjct: 370  GYVKKFTLSSTMGPGFPVTIPSLSAAADHYNKVQV 404


>gb|AFW86742.1| 50S ribosomal protein L1 [Zea mays]
          Length = 409

 Score =  368 bits (944), Expect = 3e-99
 Identities = 223/416 (53%), Positives = 261/416 (62%), Gaps = 39/416 (9%)
 Frame = +3

Query: 96   FSHLVQNPPP-LTVGTFQKLLFSSSSQTTPPPLNEDQNSQSRIHIPIIKPVSYAPKPKII 272
            FS+L +NP     +  F     + SS  +PPP             P IKPVSYAPKP+  
Sbjct: 8    FSYLRRNPQRHRLLSLFHFSSDAKSSSASPPP-------------PPIKPVSYAPKPQQQ 54

Query: 273  NPPEP-----TQNVEPTQQSSASA----------WTREDFRYVKGV-----PSMHPVRVA 392
             PPE      T +V P  QS              WTR+D RYVK       P  +P RVA
Sbjct: 55   APPEESAAPTTPDVAPRDQSPLPRRPQQPMPPREWTRQDMRYVKDAAPAISPVSYPSRVA 114

Query: 393  PLPXXXXXXXXXND---------ANKIQMR-----RRVISRTEPLQPVLPFPTLIKVEKK 530
            PLP          +         + +IQM      R V    E  +  LP+PT+I V K+
Sbjct: 115  PLPEDRPVGGEVEEVQDGGLQGESERIQMNAARPTRSVFGMHE--EDRLPYPTVIPVVKR 172

Query: 531  KPKTVLDLQEAIKEVKANA---ERKFDETVEAHVILGVDPRRGDQMVRGAATLPHGTGKT 701
              K  +DL +AI+ VK +A   +R F ETVEAHVILGVDPRRGDQMVRGA TLPHGTGKT
Sbjct: 173  PQKVAIDLIDAIRLVKTSANEKKRNFVETVEAHVILGVDPRRGDQMVRGALTLPHGTGKT 232

Query: 702  VRIAVFXXXXXXXXXXXXXXXXXXXXXXXXXXXK-GGKLNFDKCISTPIFMPRLSKIARI 878
            VR+AVF                             GGKL+FDKCI+TP+FMPRLSK+ARI
Sbjct: 233  VRVAVFAEGPGADEARAAGADVVGGDELIEEIRTGGGKLSFDKCIATPMFMPRLSKVARI 292

Query: 879  LGPRGLMPNNKLGSLTNDVGGAVRAAKRGRVDFKIDKTAIVHVGLGKVSFTEDTLRENVG 1058
            LGPRGLMPN KLGS+TNDV GAV+AAK GRVDFKIDKTAIVHVGLGKV+FTE++LREN+G
Sbjct: 293  LGPRGLMPNPKLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGLGKVNFTEESLRENIG 352

Query: 1059 AFVNALLLAKPVGLKKTSKYVGYVKSFSLCSTMGPAFPVSIQSLSLAADHYNKMQL 1226
            AFV+ALLLAKPVGLKKTSKYVGYVK F+L STMGP  PV+I SLS+AADHYNK+Q+
Sbjct: 353  AFVHALLLAKPVGLKKTSKYVGYVKKFTLSSTMGPGLPVTIPSLSVAADHYNKVQV 408


>ref|NP_001149141.1| LOC100282763 [Zea mays] gi|195625038|gb|ACG34349.1| 50S ribosomal
            protein L1 [Zea mays]
          Length = 409

 Score =  366 bits (939), Expect = 1e-98
 Identities = 215/394 (54%), Positives = 250/394 (63%), Gaps = 38/394 (9%)
 Frame = +3

Query: 159  SSSSQTTPPPLNEDQNSQSRIHIPIIKPVSYAPKPKIINPPEP-----TQNVEPTQQSSA 323
            + SS  +PPP             P IKPVSYAPKP+   PPE      T +V P  QS  
Sbjct: 30   AKSSSASPPP-------------PPIKPVSYAPKPQQQAPPEESAAPTTPDVAPRDQSPL 76

Query: 324  SA----------WTREDFRYVKGV-----PSMHPVRVAPLPXXXXXXXXXNDA------- 437
                        WTR+D RYVK       P  +P RVAPLP          +        
Sbjct: 77   PRRPQQPMPPREWTRQDMRYVKDAAPAISPVSYPSRVAPLPEDRPVGGEVEEVQDGGLQG 136

Query: 438  -------NKIQMRRRVISRTEPLQPVLPFPTLIKVEKKKPKTVLDLQEAIKEVKANA--- 587
                   N ++  R V    E  +  LP+PT+I V K+  K  +DL +AI+ VK +A   
Sbjct: 137  ESERIQMNAVRPTRSVFGMHE--EDRLPYPTVIPVVKRPQKVAIDLIDAIRLVKTSANEK 194

Query: 588  ERKFDETVEAHVILGVDPRRGDQMVRGAATLPHGTGKTVRIAVFXXXXXXXXXXXXXXXX 767
            +R F ETVEAHVILGVDPRRGDQMVRGA TLPHGTGKTVR+AVF                
Sbjct: 195  KRNFVETVEAHVILGVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPGADEARAAGADV 254

Query: 768  XXXXXXXXXXXK-GGKLNFDKCISTPIFMPRLSKIARILGPRGLMPNNKLGSLTNDVGGA 944
                         GGKL+FDKCI+TP+FMPRLSK+ARILGPRGLMPN KLGS+TNDV GA
Sbjct: 255  VGGDELIEEIRTGGGKLSFDKCIATPMFMPRLSKVARILGPRGLMPNPKLGSVTNDVSGA 314

Query: 945  VRAAKRGRVDFKIDKTAIVHVGLGKVSFTEDTLRENVGAFVNALLLAKPVGLKKTSKYVG 1124
            V+AAK GRVDFKIDKTAIVHVGLGKV+FTE++LREN+GAFV+ALLLAKPVGLKKTSKYVG
Sbjct: 315  VKAAKSGRVDFKIDKTAIVHVGLGKVNFTEESLRENIGAFVHALLLAKPVGLKKTSKYVG 374

Query: 1125 YVKSFSLCSTMGPAFPVSIQSLSLAADHYNKMQL 1226
            YVK F+L STMGP  PV+I SLS+AADHYNK+Q+
Sbjct: 375  YVKKFTLSSTMGPGLPVTIPSLSVAADHYNKVQV 408


>gb|EEE65850.1| hypothetical protein OsJ_21625 [Oryza sativa Japonica Group]
          Length = 417

 Score =  357 bits (917), Expect = 4e-96
 Identities = 211/414 (50%), Positives = 254/414 (61%), Gaps = 53/414 (12%)
 Frame = +3

Query: 147  KLLFSSSSQTTPPP----------LNEDQNSQSRIHIPIIKPVSYAPKPKIIN------- 275
            +LL S SS+  P P           N    S S    P IKPVSYAPKP+          
Sbjct: 5    RLLLSHSSRHHPQPHRLISLLRFSSNTGSGSGSGPTPPPIKPVSYAPKPQPAPEEAPAAA 64

Query: 276  -------------PPEPTQNVEPTQQSSASAWTREDFRYVKGV-----PSMHPVRVAPLP 401
                         PP P ++  P Q+     WTRE+ R+VK       P  +P RVAPLP
Sbjct: 65   EEAAPSDDPGSRPPPPPRRSQGPPQRQQ---WTREEMRFVKDAGPSITPVSYPARVAPLP 121

Query: 402  XXXXXXXXX----------NDANKIQM----RRRVISRTEPLQPVLPFPTLIKVEKKKPK 539
                                +  +I+M     RR     +  +   P+PTLI VEK+  K
Sbjct: 122  EDRPAEEAPPEGPADEGLRGEGERIEMDATRARRSFFGMQAEEEQAPYPTLIPVEKRPQK 181

Query: 540  TVLDLQEAIKEVKANA---ERKFDETVEAHVILGVDPRRGDQMVRGAATLPHGTGKTVRI 710
              +DL +AI+E+K +A   +R F ETVEAHV+LGVDPRRGDQMVRGA TLPHGTGKTVR+
Sbjct: 182  VAIDLVDAIREIKTSANEKKRNFTETVEAHVMLGVDPRRGDQMVRGALTLPHGTGKTVRV 241

Query: 711  AVFXXXXXXXXXXXXXXXXXXXXXXXXXXXK-GGKLNFDKCISTPIFMPRLSKIARILGP 887
            AVF                             GGKL+FDKCI+TP++MPRLSK+ARILGP
Sbjct: 242  AVFAEGPAADEARAAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSKVARILGP 301

Query: 888  RGLMPNNKLGSLTNDVGGAVRAAKRGRVDFKIDKTAIVHVGLGKVSFTEDTLRENVGAFV 1067
            RGLMPN KLGS+TNDV GAV+AAK GRVDFKIDKTAIVHVGLGK++F+++ LREN+GAFV
Sbjct: 302  RGLMPNPKLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFV 361

Query: 1068 NALLLAKPVGLKKTSKYVGYVKSFSLCSTMGPAFPVSIQSLSLAADHYNKMQLK 1229
            +ALLLAKPVGLKKTSKYVGYVK F+L STMGP FPV+I SLS AADHYN  +++
Sbjct: 362  HALLLAKPVGLKKTSKYVGYVKKFTLSSTMGPGFPVTIPSLSAAADHYNNSKVQ 415


>gb|EEC80778.1| hypothetical protein OsI_23301 [Oryza sativa Indica Group]
          Length = 417

 Score =  357 bits (917), Expect = 4e-96
 Identities = 211/414 (50%), Positives = 254/414 (61%), Gaps = 53/414 (12%)
 Frame = +3

Query: 147  KLLFSSSSQTTPPP----------LNEDQNSQSRIHIPIIKPVSYAPKPKIIN------- 275
            +LL S SS+  P P           N    S S    P IKPVSYAPKP+          
Sbjct: 5    RLLLSHSSRHHPQPHRLISLLHFSSNTGSGSGSGPTPPPIKPVSYAPKPQPAPEEAPAAA 64

Query: 276  -------------PPEPTQNVEPTQQSSASAWTREDFRYVKGV-----PSMHPVRVAPLP 401
                         PP P ++  P Q+     WTRE+ R+VK       P  +P RVAPLP
Sbjct: 65   EEAAPSDDPGSRPPPPPRRSQGPPQRQQ---WTREEMRFVKDAGPSITPVSYPARVAPLP 121

Query: 402  XXXXXXXXX----------NDANKIQM----RRRVISRTEPLQPVLPFPTLIKVEKKKPK 539
                                +  +I+M     RR     +  +   P+PTLI VEK+  K
Sbjct: 122  EDRPAEEAPPEGPADEGLRGEGERIEMDATRARRSFFGMQAEEEQAPYPTLIPVEKRPQK 181

Query: 540  TVLDLQEAIKEVKANA---ERKFDETVEAHVILGVDPRRGDQMVRGAATLPHGTGKTVRI 710
              +DL +AI+E+K +A   +R F ETVEAHV+LGVDPRRGDQMVRGA TLPHGTGKTVR+
Sbjct: 182  VAIDLVDAIREIKTSANEKKRNFTETVEAHVMLGVDPRRGDQMVRGALTLPHGTGKTVRV 241

Query: 711  AVFXXXXXXXXXXXXXXXXXXXXXXXXXXXK-GGKLNFDKCISTPIFMPRLSKIARILGP 887
            AVF                             GGKL+FDKCI+TP++MPRLSK+ARILGP
Sbjct: 242  AVFAEGPAADEARAAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSKVARILGP 301

Query: 888  RGLMPNNKLGSLTNDVGGAVRAAKRGRVDFKIDKTAIVHVGLGKVSFTEDTLRENVGAFV 1067
            RGLMPN KLGS+TNDV GAV+AAK GRVDFKIDKTAIVHVGLGK++F+++ LREN+GAFV
Sbjct: 302  RGLMPNPKLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFV 361

Query: 1068 NALLLAKPVGLKKTSKYVGYVKSFSLCSTMGPAFPVSIQSLSLAADHYNKMQLK 1229
            +ALLLAKPVGLKKTSKYVGYVK F+L STMGP FPV+I SLS AADHYN  +++
Sbjct: 362  HALLLAKPVGLKKTSKYVGYVKKFTLSSTMGPGFPVTIPSLSAAADHYNNSKVQ 415