BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000380
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus comm...   201   5e-50
ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplast...   197   1e-48
ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arab...   196   2e-48
sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor...   196   2e-48
emb|CBI30132.3| unnamed protein product [Vitis vinifera]              195   4e-48

>ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
           gi|223538602|gb|EEF40205.1| DNA gyrase subunit B,
           putative [Ricinus communis]
          Length = 732

 Score =  201 bits (511), Expect = 5e-50
 Identities = 87/111 (78%), Positives = 106/111 (95%)
 Frame = -2

Query: 335 VFTTSVEFDHTTVAGRIRELAFLNPELTITLRKEDDDPEKTQHNEYYYAGGLLEYVKWLN 156
           VFTT++EFD+ T+AGR+RELAFLNP+LTITL+KED+DPEK Q++EY+YAGGL+EYVKWLN
Sbjct: 266 VFTTAIEFDYNTIAGRVRELAFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEYVKWLN 325

Query: 155 SDKKPIHDTVGFRNEVEGITIDLALQWCSDAYSDTVLGYANSIRTVDGGTH 3
           +DKKP+HD VGF  E++GITID+ALQWCSDAYSDT+LGYANSIRT+DGGTH
Sbjct: 326 TDKKPLHDVVGFGKEIDGITIDMALQWCSDAYSDTILGYANSIRTIDGGTH 376


>ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
           [Glycine max]
          Length = 726

 Score =  197 bits (500), Expect = 1e-48
 Identities = 85/111 (76%), Positives = 102/111 (91%)
 Frame = -2

Query: 335 VFTTSVEFDHTTVAGRIRELAFLNPELTITLRKEDDDPEKTQHNEYYYAGGLLEYVKWLN 156
           VFTT+++FDH T+AGRIRELAFLNP+LTITLRKED+DPEK Q+NEY+YAGGL+EYVKWLN
Sbjct: 260 VFTTAIQFDHNTIAGRIRELAFLNPKLTITLRKEDNDPEKVQYNEYFYAGGLVEYVKWLN 319

Query: 155 SDKKPIHDTVGFRNEVEGITIDLALQWCSDAYSDTVLGYANSIRTVDGGTH 3
           +DKK +HD + FR E +GIT+D+A QWC DAYSDT+LGYANSIRT+DGGTH
Sbjct: 320 TDKKALHDVLSFRKETDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTH 370


>ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata] gi|297318973|gb|EFH49395.1| hypothetical protein
           ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata]
          Length = 729

 Score =  196 bits (498), Expect = 2e-48
 Identities = 85/111 (76%), Positives = 102/111 (91%)
 Frame = -2

Query: 335 VFTTSVEFDHTTVAGRIRELAFLNPELTITLRKEDDDPEKTQHNEYYYAGGLLEYVKWLN 156
           VFTT++EFDH T+AGRIRELAFLNP++TI+L+KEDDDPEK Q++EYY+AGGL EYV WLN
Sbjct: 263 VFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKNQYSEYYFAGGLTEYVSWLN 322

Query: 155 SDKKPIHDTVGFRNEVEGITIDLALQWCSDAYSDTVLGYANSIRTVDGGTH 3
           +DK PIHD +GFR E+ G T+D+ALQWCSDAYSDT+LGYANSIRT+DGGTH
Sbjct: 323 TDKNPIHDVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTH 373


>sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B
           subunit [Nicotiana benthamiana]
          Length = 731

 Score =  196 bits (498), Expect = 2e-48
 Identities = 88/111 (79%), Positives = 102/111 (91%)
 Frame = -2

Query: 335 VFTTSVEFDHTTVAGRIRELAFLNPELTITLRKEDDDPEKTQHNEYYYAGGLLEYVKWLN 156
           VFTT ++FD+ T+AGRIRELAFLNPELTI L+KED DPEK Q NEY+YAGGL+EYVKWLN
Sbjct: 265 VFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLN 324

Query: 155 SDKKPIHDTVGFRNEVEGITIDLALQWCSDAYSDTVLGYANSIRTVDGGTH 3
           +DKKP+HD +GFR E +GITID+ALQWCSDAYSDT+LGYANSIRT+DGGTH
Sbjct: 325 ADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTMLGYANSIRTIDGGTH 375


>emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  195 bits (495), Expect = 4e-48
 Identities = 87/111 (78%), Positives = 101/111 (90%)
 Frame = -2

Query: 335 VFTTSVEFDHTTVAGRIRELAFLNPELTITLRKEDDDPEKTQHNEYYYAGGLLEYVKWLN 156
           VFTT ++FD+ T+AGRIRELAFLNPEL ITLRKED DPEK Q+NEY YAGGL+EYV+WLN
Sbjct: 241 VFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVRWLN 300

Query: 155 SDKKPIHDTVGFRNEVEGITIDLALQWCSDAYSDTVLGYANSIRTVDGGTH 3
           +DKKP+HD VGFR   +GI+ID+ALQWCSDAYSDT+LGYANSIRT+DGGTH
Sbjct: 301 TDKKPVHDVVGFRKVADGISIDVALQWCSDAYSDTMLGYANSIRTIDGGTH 351