BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000360
         (781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39707.3| unnamed protein product [Vitis vinifera]              244   1e-62
ref|XP_002265045.1| PREDICTED: 30S ribosomal protein S10, chloro...   244   1e-62
emb|CAN74383.1| hypothetical protein VITISV_023801 [Vitis vinifera]   239   4e-61
gb|ABK96376.1| unknown [Populus trichocarpa x Populus deltoides]      238   1e-60
sp|Q9M4Y3.1|RR10_MESCR RecName: Full=30S ribosomal protein S10, ...   236   3e-60

>emb|CBI39707.3| unnamed protein product [Vitis vinifera]
          Length = 200

 Score =  244 bits (624), Expect = 1e-62
 Identities = 127/163 (77%), Positives = 141/163 (86%), Gaps = 6/163 (3%)
 Frame = -1

Query: 655 FHSLKSSQHN-NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRIVVDADVEK 494
           F SLK+ + + +S ++FAAPELL S  ETPD       +EV GSETPG S + +  D +K
Sbjct: 39  FSSLKTLKPSLSSSRVFAAPELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADK 97

Query: 493 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 314
           MAPKQKIRIKLRSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHK
Sbjct: 98  MAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHK 157

Query: 313 DARFHFEIRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 185
           DARFHFEIRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 158 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 200


>ref|XP_002265045.1| PREDICTED: 30S ribosomal protein S10, chloroplastic [Vitis
           vinifera]
          Length = 203

 Score =  244 bits (624), Expect = 1e-62
 Identities = 127/163 (77%), Positives = 141/163 (86%), Gaps = 6/163 (3%)
 Frame = -1

Query: 655 FHSLKSSQHN-NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRIVVDADVEK 494
           F SLK+ + + +S ++FAAPELL S  ETPD       +EV GSETPG S + +  D +K
Sbjct: 42  FSSLKTLKPSLSSSRVFAAPELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADK 100

Query: 493 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 314
           MAPKQKIRIKLRSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHK
Sbjct: 101 MAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHK 160

Query: 313 DARFHFEIRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 185
           DARFHFEIRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 161 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203


>emb|CAN74383.1| hypothetical protein VITISV_023801 [Vitis vinifera]
          Length = 203

 Score =  239 bits (611), Expect = 4e-61
 Identities = 122/152 (80%), Positives = 133/152 (87%), Gaps = 5/152 (3%)
 Frame = -1

Query: 625 NSFKLFAAPELLESVPETPD-----VPLEVVGSETPGTSRIVVDADVEKMAPKQKIRIKL 461
           +S ++FAA ELL S  ETPD       +EV GSETPG S + +  D +KMAPKQKIRIKL
Sbjct: 53  SSSRVFAASELLSS-QETPDGLEDSATIEVEGSETPGASALSMGVDADKMAPKQKIRIKL 111

Query: 460 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 281
           RSYWVPLIEDSCKQIM+AARTTNAKTMGPVPLPTKK+I+CVLKSPHVHKDARFHFEIRTH
Sbjct: 112 RSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHKDARFHFEIRTH 171

Query: 280 QRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 185
           QRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 172 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203


>gb|ABK96376.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 209

 Score =  238 bits (606), Expect = 1e-60
 Identities = 119/154 (77%), Positives = 133/154 (86%), Gaps = 10/154 (6%)
 Frame = -1

Query: 616 KLFAAPELLES------VPETPDVP----LEVVGSETPGTSRIVVDADVEKMAPKQKIRI 467
           ++FAAPE L+S      +P+T D P    L+V GSETP +  + + AD +KMAPKQKIRI
Sbjct: 56  RVFAAPEALDSQTTLDPLPDTLDAPYSDTLQVEGSETPSSQSVSITADADKMAPKQKIRI 115

Query: 466 KLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIR 287
           KLRS+WV LIEDSCKQIMDAARTTNAKTMGPVPLPTKKR+YCVLKSPHVHKDARFHFEIR
Sbjct: 116 KLRSFWVKLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRVYCVLKSPHVHKDARFHFEIR 175

Query: 286 THQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 185
           THQRLIDI+YPTAQTIDSLMQLD+PAGVDVEVKL
Sbjct: 176 THQRLIDILYPTAQTIDSLMQLDIPAGVDVEVKL 209


>sp|Q9M4Y3.1|RR10_MESCR RecName: Full=30S ribosomal protein S10, chloroplastic; Flags:
           Precursor gi|188036211|pdb|3BBN|J Chain J, Homology
           Model For The Spinach Chloroplast 30s Subunit Fitted To
           9.4a Cryo-Em Map Of The 70s Chlororibosome.
           gi|7578929|gb|AAF64190.1|AF245665_1 plastid ribosomal
           protein S10 precursor [Mesembryanthemum crystallinum]
          Length = 197

 Score =  236 bits (603), Expect = 3e-60
 Identities = 122/156 (78%), Positives = 136/156 (87%)
 Frame = -1

Query: 652 HSLKSSQHNNSFKLFAAPELLESVPETPDVPLEVVGSETPGTSRIVVDADVEKMAPKQKI 473
           HS  SS  +++ ++FAAPE+LES    P+  +E  GSET   S + + AD ++MAPKQKI
Sbjct: 46  HSSPSSSSSSNVRVFAAPEVLESQETGPESYVEE-GSET---SALGIGADSDQMAPKQKI 101

Query: 472 RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFE 293
           RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFE
Sbjct: 102 RIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFE 161

Query: 292 IRTHQRLIDIVYPTAQTIDSLMQLDLPAGVDVEVKL 185
           IRTHQRLIDI+YPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 162 IRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197