BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000243
         (1483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an...   530   e-148
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ...   493   e-137
ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|2...   472   e-130
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an...   470   e-130
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ...   455   e-125

>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
            protein product [Vitis vinifera]
          Length = 372

 Score =  530 bits (1366), Expect = e-148
 Identities = 268/362 (74%), Positives = 295/362 (81%), Gaps = 2/362 (0%)
 Frame = -2

Query: 1326 ALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFKDNF 1147
            ALDMPDVP G+LPPH+E QRTRVLCN DAPTHTE+V  SGAY+SM +DNS  +  F +NF
Sbjct: 6    ALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNF 65

Query: 1146 EVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVLAHR 967
             V+VIRL+ED+MEFDMIGID S+ANAFRRILIAE+PTMAIEKVLIANNTS+VQDEVLAHR
Sbjct: 66   RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125

Query: 966  LGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGSGFL 793
            LGLIPI  DPR+FD +SENDTPNEKNTIVF LHVRC  G  RLTVKS+EL+WLPHGS F 
Sbjct: 126  LGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLPHGSEFP 185

Query: 792  VETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDIIIAKLGTGQEIELEAHAV 613
            + TEN      S  KTYTSF  SQ  + +F    IGPKH DIIIAKLG GQEIELEAHAV
Sbjct: 186  LATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAV 245

Query: 612  KGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXLKQKCPVKVFDIEDTLEGKKKAF 433
            KGMGKTHAKWSPVATAWYRMLP               L +KCPV VFDIED  +GKKKA 
Sbjct: 246  KGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKAT 305

Query: 432  VANPRACTLCRECIRGEEWQKCVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCE 253
            VA PRACTLCRECIRG++W K VA+RRVK+HFIFTIESTGALPPEVLF EAVK+LEDKCE
Sbjct: 306  VARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLEDKCE 365

Query: 252  RV 247
            RV
Sbjct: 366  RV 367


>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
            communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
            polymerase I/III subunits, putative [Ricinus communis]
          Length = 374

 Score =  493 bits (1268), Expect = e-137
 Identities = 250/365 (68%), Positives = 287/365 (78%), Gaps = 2/365 (0%)
 Frame = -2

Query: 1335 KISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFK 1156
            K S  D+PDVPMG+LPPHL+ QRTRV+C SDAP HT++++ SGAYAS+ +DNS  L  F+
Sbjct: 13   KFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFR 72

Query: 1155 DNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVL 976
            DNF+V+VI+L +D+MEFDMIGIDA++ANAFRRILI+E+PTMAIEKVLIANNTS++QDEVL
Sbjct: 73   DNFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVL 132

Query: 975  AHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGS 802
            AHRLGLIPI  DPR+F+Y+S NDTPNEKNTIVFKLH  C  G  R TV S+EL+WLP GS
Sbjct: 133  AHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGS 192

Query: 801  GFLVETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDIIIAKLGTGQEIELEA 622
              L E+E       S   TYTSF     +  DF   P+ P  + II+AKLG GQEIELEA
Sbjct: 193  QLLKESEKAD----SKPSTYTSF----TDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEA 244

Query: 621  HAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXLKQKCPVKVFDIEDTLEGKK 442
            HAVKG+GKTHAKWSPVATAWYRMLP               L +KCPV VFDIED   GKK
Sbjct: 245  HAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNGKK 304

Query: 441  KAFVANPRACTLCRECIRGEEWQKCVALRRVKDHFIFTIESTGALPPEVLFTEAVKILED 262
            +A VA PRACTLCRECIRG EW K V+LRRVKDHFIFTIESTGALPPEVLFTEAVK+LED
Sbjct: 305  RATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLED 364

Query: 261  KCERV 247
            KCERV
Sbjct: 365  KCERV 369


>ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|222847643|gb|EEE85190.1|
            predicted protein [Populus trichocarpa]
          Length = 390

 Score =  472 bits (1214), Expect = e-130
 Identities = 250/380 (65%), Positives = 284/380 (74%), Gaps = 3/380 (0%)
 Frame = -2

Query: 1377 KMSCITSEAPPPKPKISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYA 1198
            +MS    E    +   S  ++ DV  G+LPPH+ +Q TRV C  DAPT+TE++  SG+YA
Sbjct: 11   RMSSEEEEQQQKEEGFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYA 70

Query: 1197 SMELDNSGLLGHFKDNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKV 1018
            SM +DNS  L  F++NF + VI L++D+MEFDMIGIDA+VANAFRRILI+EVPTMAIEKV
Sbjct: 71   SMGVDNSLRLDSFRENFRIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKV 130

Query: 1017 LIANNTSVVQDEVLAHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RL 844
             IANNTSV+QDEVLAHRLGLIPIKVDPR+F+Y+S NDTPNEKNTIV KLH RC  G  R 
Sbjct: 131  FIANNTSVIQDEVLAHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRC 190

Query: 843  TVKSDELQWLPHGSGFLVETENPQLIQKSGSKTYTSFGRSQAEMSDFESNPIGPKHEDII 664
            +V S EL+WLP+GS F  E+E P     S   TYTSF   Q  + +F  NPI    EDII
Sbjct: 191  SVYSQELKWLPNGSEFAKESEKPD----SKPSTYTSFSCGQDSLPEFAGNPISTV-EDII 245

Query: 663  IAKLGTGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXLKQKCP 484
            +AKLG GQEIELEAHAVKGMGKTHAKWSPV TAWYRM P               L +KCP
Sbjct: 246  LAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCP 305

Query: 483  VKVFDIEDTLEGKKKAFVANPRACTLCRECIRG-EEWQKCVALRRVKDHFIFTIESTGAL 307
              VFDIEDT   KKKA VA+ RACTLCRECIRG EEW+K VAL RVKDHFIFTIESTGAL
Sbjct: 306  SGVFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGAL 365

Query: 306  PPEVLFTEAVKILEDKCERV 247
            PPEVLFTEAVKILE KCERV
Sbjct: 366  PPEVLFTEAVKILEAKCERV 385


>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cucumis sativus] gi|449522768|ref|XP_004168398.1|
            PREDICTED: DNA-directed RNA polymerases I and III subunit
            RPAC1-like [Cucumis sativus]
          Length = 391

 Score =  470 bits (1210), Expect = e-130
 Identities = 243/362 (67%), Positives = 288/362 (79%), Gaps = 3/362 (0%)
 Frame = -2

Query: 1323 LDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMELDNSGLLGHFKDNFE 1144
            +++PDVPM +LPPH+E QRTRV C +DAP HT+++  SGA+ASM  DNS  L +F++NF+
Sbjct: 30   MNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNFK 88

Query: 1143 VDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIANNTSVVQDEVLAHRL 964
            ++VI L ED++EFDMIGID ++ANAFRRILI+EVPTMAIEKVL ANNTS+VQDEVLAHRL
Sbjct: 89   IEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDEVLAHRL 148

Query: 963  GLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKSDELQWLPHGSGFLV 790
            GL+PI+VDPR+F Y S+ D PNE NTIVF+LH  C  G  RLTV S  L WLP+GS F +
Sbjct: 149  GLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNGSEFPL 207

Query: 789  ETENPQLIQKSGSKTYTSFGRSQAEMS-DFESNPIGPKHEDIIIAKLGTGQEIELEAHAV 613
             ++  + +  S  KTYTSF  SQ  +S +F +NPIGPK  DII+A+LG GQEIELEAHAV
Sbjct: 208  VSD--KSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEAHAV 265

Query: 612  KGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXLKQKCPVKVFDIEDTLEGKKKAF 433
            KGMGKTHAKWSPVATAWYRMLP               L++KCPV VFDIED + GKK+A 
Sbjct: 266  KGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCPVNVFDIED-IAGKKRAT 324

Query: 432  VANPRACTLCRECIRGEEWQKCVALRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCE 253
            VA PR CTLCRECIRG+ W+K VALRRVKDHFIF IESTGALPPEVLFTEAVKILEDKCE
Sbjct: 325  VARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCE 384

Query: 252  RV 247
            R+
Sbjct: 385  RL 386


>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
            gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 385

 Score =  455 bits (1171), Expect = e-125
 Identities = 240/381 (62%), Positives = 279/381 (73%), Gaps = 8/381 (2%)
 Frame = -2

Query: 1365 ITSEAPPPKPKISALDMPDVPMGRLPPHLERQRTRVLCNSDAPTHTESVLSSGAYASMEL 1186
            +T E        +  D+PDVP G LPPHLE QRTR +C +DAP H  SVL SGAYASM +
Sbjct: 10   VTDEEKQFAKNFNIFDLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGV 68

Query: 1185 DNSGLLGHFKDNFEVDVIRLNEDEMEFDMIGIDASVANAFRRILIAEVPTMAIEKVLIAN 1006
            DNS  L +F ++F+VDVI L E  M FDMIG+ A +ANAFRRIL+AE+P+MAIEKV +AN
Sbjct: 69   DNSVRLENFSEDFKVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVAN 128

Query: 1005 NTSVVQDEVLAHRLGLIPIKVDPRVFDYISENDTPNEKNTIVFKLHVRCTHG--RLTVKS 832
            NTSV+QDEVLAHRLGLIPI  DPR+F+Y+SEND PNEKNTIVFKLHV+C  G  R  V +
Sbjct: 129  NTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRRKVLT 188

Query: 831  DELQWLPHGSGFLVETENPQLIQKSGS-----KTYTSFGRSQAEMSDFESNPIGPKHEDI 667
             EL+WLP+GS         +L+++SG      KTYTSF  SQ     F  NPI P  +DI
Sbjct: 189  SELKWLPNGS---------ELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDI 239

Query: 666  IIAKLGTGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPXXXXXXXXXXXXXXXLKQKC 487
            +IAKLG GQEIELEAHAVKG+GKTHAKWSPVATAWYRMLP               L + C
Sbjct: 240  LIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVC 299

Query: 486  PVKVFDIEDTLEGKKKAFVANPRACTLCRECIR-GEEWQKCVALRRVKDHFIFTIESTGA 310
            P KVFDIED  +G+K+A VA PR C+LCRECIR G EW K V LRRVK+HFIFTIESTG+
Sbjct: 300  PKKVFDIEDMGQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGS 359

Query: 309  LPPEVLFTEAVKILEDKCERV 247
             PP+VLF EAVKILEDKCERV
Sbjct: 360  QPPDVLFNEAVKILEDKCERV 380