BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000215
         (1182 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-li...   480   e-133
emb|CBI32318.3| unnamed protein product [Vitis vinifera]              466   e-129
ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-li...   453   e-125
ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-li...   448   e-123
ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago t...   447   e-123

>ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
          Length = 330

 Score =  480 bits (1235), Expect = e-133
 Identities = 231/309 (74%), Positives = 278/309 (89%), Gaps = 2/309 (0%)
 Frame = +3

Query: 36  ELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELDGEVV 215
           +L+LNQTQK+RLQ+AL+ ++ LSSK+NS+ASV V DTIPVN EDGVLKGHGT +LDGEVV
Sbjct: 5   QLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLDGEVV 64

Query: 216 ATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRIVEVAPKRWRIEINFSQDAVLMLSSM 395
           ATLCGVVERVNKLVY++T RARYKPETGDI+VGR+ E+APKRWR++INFSQDAVLMLSSM
Sbjct: 65  ATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLMLSSM 124

Query: 396 NMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERGQLVM 575
           N+PDGIQRRRTA+DELNMR IFEEND++CAEVRG QHDG LHLQARSQKYGKLERGQ++ 
Sbjct: 125 NLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERGQVLT 184

Query: 576 IPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSD--NTKNSS 749
           I PYLVKRRKQH H+LE++G+D+ILGCNG+IWVGEHVE + +++EDQ  K++  NTK+SS
Sbjct: 185 ISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNTKSSS 244

Query: 750 DLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLDIH 929
                S+EEQERTYT L TRQ ICR+ NAVRVL++LGF++T+E+I +TV+LS SLNLDIH
Sbjct: 245 S-TFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLDIH 303

Query: 930 EMLGTEFYV 956
           EMLG+EFYV
Sbjct: 304 EMLGSEFYV 312


>emb|CBI32318.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  466 bits (1198), Expect = e-129
 Identities = 225/309 (72%), Positives = 272/309 (88%), Gaps = 2/309 (0%)
 Frame = +3

Query: 36  ELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELDGEVV 215
           +L+LNQTQK+RLQ+AL+ ++ LSSK+NS+ASV V DTIPVN EDGVLKGHGT +LDGEVV
Sbjct: 5   QLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLDGEVV 64

Query: 216 ATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRIVEVAPKRWRIEINFSQDAVLMLSSM 395
           ATLCGVVERVNKLVY++T RARYKPETGDI+VGR+ E+APKRWR++INFSQDAVLMLSSM
Sbjct: 65  ATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLMLSSM 124

Query: 396 NMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERGQLVM 575
           N+PDGIQRRRTA+DELNMR IFEEND++CAEVRG QHDG LHLQARSQKYGKLERGQ++ 
Sbjct: 125 NLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERGQVLT 184

Query: 576 IPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSD--NTKNSS 749
           I PYLVKRRKQH H+LE++G+D+ILGCNG+IWVGEHVE + +++EDQ  K++  NTK+S 
Sbjct: 185 ISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNTKSS- 243

Query: 750 DLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLDIH 929
                     +RTYT L TRQ ICR+ NAVRVL++LGF++T+E+I +TV+LS SLNLDIH
Sbjct: 244 ----------KRTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLDIH 293

Query: 930 EMLGTEFYV 956
           EMLG+EFYV
Sbjct: 294 EMLGSEFYV 302


>ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
          Length = 327

 Score =  453 bits (1166), Expect = e-125
 Identities = 219/309 (70%), Positives = 268/309 (86%)
 Frame = +3

Query: 30  EVELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELDGE 209
           E++L L+QTQK+RLQKAL+ ++ LS+K NS ASVI+ D+I VN EDGVLKGHGT +L+GE
Sbjct: 3   EIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLNGE 62

Query: 210 VVATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRIVEVAPKRWRIEINFSQDAVLMLS 389
           VVATLCGVVERVNKLVYV+  R+RYKPE GDIV+GR+VEVA KRWR+EIN++QDAVL+LS
Sbjct: 63  VVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLLLS 122

Query: 390 SMNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERGQL 569
           SMNMPDG+QRRRTA+DELNMR IFEENDV+CAEVRG QHDG LHLQARS+KYGKL RGQL
Sbjct: 123 SMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQL 181

Query: 570 VMIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSDNTKNSS 749
           + +PPYLVKR+KQHFHHLE++GID+ILGCNG+IWVGEHVE +D M+EDQ ++SD+     
Sbjct: 182 LTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLFP 241

Query: 750 DLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLDIH 929
           +    S+EEQE+ YT L TR+ I R  NAVRVLS+LGFN+T+E+I   +DLS+S+NLDIH
Sbjct: 242 NKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIH 301

Query: 930 EMLGTEFYV 956
           +MLG+EF V
Sbjct: 302 DMLGSEFCV 310


>ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
          Length = 327

 Score =  448 bits (1153), Expect = e-123
 Identities = 221/312 (70%), Positives = 266/312 (85%), Gaps = 2/312 (0%)
 Frame = +3

Query: 33  VELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELDGEV 212
           ++L+LN TQKIRL++A + ++ LSSK NS ASV+V DTIP+N EDGVLKGHGT +L+GEV
Sbjct: 4   LQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLNGEV 63

Query: 213 VATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRIVEVAPKRWRIEINFSQDAVLMLSS 392
           VA++CGVVERVNKL+YV+  RARYKPE GDIVVGR+ EVAPKRWR++IN+ QDAVLMLSS
Sbjct: 64  VASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLMLSS 123

Query: 393 MNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERGQLV 572
           MN+PDGIQRRRTA+DELNMR IFEENDVICAEVRGLQHDG LHLQARSQKYGKLERGQL+
Sbjct: 124 MNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQLL 182

Query: 573 MIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVE--VRDVMVEDQETKSDNTKNS 746
            + PYL+KRRKQHFHHLEQYGID+ILGCNG+IW+GEHV+  V D M+EDQ  K +  +  
Sbjct: 183 TVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPE--QKG 240

Query: 747 SDLELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLDI 926
           S  E T   + +  YTPL TRQ ICR  NA+RVLS+LGF +T+E+I++ V+LSISLN+D+
Sbjct: 241 SKFEGTFGNQVQEVYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 300

Query: 927 HEMLGTEFYVRT 962
           HEMLG+EF V T
Sbjct: 301 HEMLGSEFCVLT 312


>ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
           gi|217074186|gb|ACJ85453.1| unknown [Medicago
           truncatula] gi|355510788|gb|AES91930.1| Exosome complex
           exonuclease RRP4 [Medicago truncatula]
           gi|388516977|gb|AFK46550.1| unknown [Medicago
           truncatula]
          Length = 327

 Score =  447 bits (1150), Expect = e-123
 Identities = 220/308 (71%), Positives = 260/308 (84%)
 Frame = +3

Query: 33  VELALNQTQKIRLQKALQHIQHLSSKTNSSASVIVTDTIPVNLEDGVLKGHGTNELDGEV 212
           + L L+QTQK+RLQKAL+H++ LSSK NS +SV + D+IPVN EDGVLKGHGT +LDGEV
Sbjct: 4   IHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLDGEV 63

Query: 213 VATLCGVVERVNKLVYVKTFRARYKPETGDIVVGRIVEVAPKRWRIEINFSQDAVLMLSS 392
           VATLCGVVERVNKLVYV+  R+RYKPE GDIV+GR++EVA KRWR++IN+SQ+A LMLS+
Sbjct: 64  VATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLMLSA 123

Query: 393 MNMPDGIQRRRTALDELNMRGIFEENDVICAEVRGLQHDGCLHLQARSQKYGKLERGQLV 572
           MNMPDG+QRRRTALDELNMR IFEE DVICAEVRG QHDG LHLQARSQKYGKL  GQL+
Sbjct: 124 MNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG-LHLQARSQKYGKLSTGQLL 182

Query: 573 MIPPYLVKRRKQHFHHLEQYGIDMILGCNGYIWVGEHVEVRDVMVEDQETKSDNTKNSSD 752
            + PYLVKR+KQHFHHLEQYGID+I+GCNG+IWVGEHVEVRD MVEDQ  +SD    + +
Sbjct: 183 TVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLTPN 242

Query: 753 LELTSIEEQERTYTPLGTRQMICRLTNAVRVLSSLGFNLTIELIIDTVDLSISLNLDIHE 932
               S+EEQE+ YT L TR+ ICR  NAVR LS+LGF +T E+I   +DLS+S NLDIH+
Sbjct: 243 KNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLDIHD 302

Query: 933 MLGTEFYV 956
           MLG+EF V
Sbjct: 303 MLGSEFCV 310