BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000168
         (825 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   423   e-116
ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   422   e-116
ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [...   417   e-114
ref|XP_003548260.1| PREDICTED: 40S ribosomal protein S3-3-like [...   416   e-114
ref|XP_002308530.1| predicted protein [Populus trichocarpa] gi|1...   416   e-114

>ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297738588|emb|CBI27833.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  423 bits (1087), Expect = e-116
 Identities = 213/226 (94%), Positives = 219/226 (96%)
 Frame = +3

Query: 3   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 182
           RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE
Sbjct: 9   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 68

Query: 183 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 362
           LTSVVQKRFKFPENSVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIME
Sbjct: 69  LTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIME 128

Query: 363 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 542
           SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQGVLGIKVKI
Sbjct: 129 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKI 188

Query: 543 MLDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 680
           MLDWDPKGKQGP TPLPDLVTIH PK+EEEY+RP  +AT+I+V  A
Sbjct: 189 MLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVPTA 234


>ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297743020|emb|CBI35887.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  422 bits (1086), Expect = e-116
 Identities = 213/226 (94%), Positives = 220/226 (97%)
 Frame = +3

Query: 3   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 182
           RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE
Sbjct: 9   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 68

Query: 183 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 362
           LTSVVQKRFKFPEN+VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+ME
Sbjct: 69  LTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVME 128

Query: 363 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 542
           SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQGVLGIKVKI
Sbjct: 129 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKI 188

Query: 543 MLDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 680
           MLDWDPKGKQGP TPLPDLVTIH PK+EEEY+RP + A +I+VAAA
Sbjct: 189 MLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVAAA 234


>ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
           gi|449521735|ref|XP_004167885.1| PREDICTED: 40S
           ribosomal protein S3-3-like [Cucumis sativus]
          Length = 236

 Score =  417 bits (1071), Expect = e-114
 Identities = 212/228 (92%), Positives = 219/228 (96%), Gaps = 2/228 (0%)
 Frame = +3

Query: 3   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 182
           RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE
Sbjct: 9   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 68

Query: 183 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 362
           LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+ME
Sbjct: 69  LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVME 128

Query: 363 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 542
           SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQGVLGIKVKI
Sbjct: 129 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKI 188

Query: 543 MLDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRP--ALMATEIDVAAA 680
           MLDWDPKGKQGP TPLPDLVTIH PK+EE+++RP   +  TEI+V AA
Sbjct: 189 MLDWDPKGKQGPPTPLPDLVTIHSPKEEEDFIRPVAVIPTTEIEVGAA 236


>ref|XP_003548260.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max]
          Length = 235

 Score =  416 bits (1069), Expect = e-114
 Identities = 212/227 (93%), Positives = 219/227 (96%), Gaps = 1/227 (0%)
 Frame = +3

Query: 3   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 182
           RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQ VLGEKGRRIRE
Sbjct: 9   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRE 68

Query: 183 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 362
           LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+ME
Sbjct: 69  LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVME 128

Query: 363 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 542
           SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAVRHVLLRQGVLGIKVKI
Sbjct: 129 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKI 188

Query: 543 MLDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRP-ALMATEIDVAAA 680
           MLDWDPKGKQGP TPLPDLVTIH PK+EEEY RP A++AT+I+V  A
Sbjct: 189 MLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATDIEVPVA 235


>ref|XP_002308530.1| predicted protein [Populus trichocarpa] gi|118483836|gb|ABK93809.1|
           unknown [Populus trichocarpa]
           gi|118485378|gb|ABK94546.1| unknown [Populus
           trichocarpa] gi|222854506|gb|EEE92053.1| predicted
           protein [Populus trichocarpa]
          Length = 236

 Score =  416 bits (1069), Expect = e-114
 Identities = 209/226 (92%), Positives = 216/226 (95%)
 Frame = +3

Query: 3   RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 182
           RKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE
Sbjct: 9   RKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRE 68

Query: 183 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 362
           LTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+ME
Sbjct: 69  LTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVME 128

Query: 363 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 542
           SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYID+AVRHVLLRQGVLGIKVKI
Sbjct: 129 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAAVRHVLLRQGVLGIKVKI 188

Query: 543 MLDWDPKGKQGPMTPLPDLVTIHMPKDEEEYVRPALMATEIDVAAA 680
           MLDWDPKGK GPMTPLPDLVTIH PK+EEEYV P +M T I++  A
Sbjct: 189 MLDWDPKGKVGPMTPLPDLVTIHPPKEEEEYVAPPVMTTNIEIPVA 234