BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000124
         (2618 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion p...   847   0.0  
pir||T48355 transitional endoplasmic reticulum ATPase - Arabidop...  1051   0.0  
ref|NP_568114.1| cell division control protein 48-e [Arabidopsis...  1051   0.0  
ref|NP_187595.1| cell division control protein 48-A [Arabidopsis...  1051   0.0  
ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arab...  1050   0.0  

>gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion protein [Drosophila
            melanogaster]
          Length = 799

 Score =  847 bits (2189), Expect(2) = 0.0
 Identities = 414/562 (73%), Positives = 483/562 (85%), Gaps = 1/562 (0%)
 Frame = +1

Query: 1    VDEAINDDNSVVSMHPDTMEKLTLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKV 180
            V+EA NDDNSVVS+    M++L LFRGDT+++KGK+RK+T+CI L+D+TC + KIRMN+V
Sbjct: 25   VEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRV 84

Query: 181  VRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDVYLKPYFLEAYRPVR 360
            VR+NL V L DVVSV  CPDVKYGKRV ILP+D++ EG+TGNLF++YLKPYF      + 
Sbjct: 85   VRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFPRGLSAIH 144

Query: 361  KGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPVKREXXXXXXXXXXXXXXX 540
             GD F+VR  MR +EFKV+ TDP  YC+V+P+T IFC+G+P+KRE               
Sbjct: 145  MGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIG 204

Query: 541  X-RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 717
              RKQ+AQI+E+VELPLRHP LFK+IGVKPP+GIL+YGPPG+GKTLIARAVANETGAFFF
Sbjct: 205  GCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFF 264

Query: 718  CINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 897
             INGPEIMSKLAGESESNLRKAFEEAEKN+P+IIFIDEID+IAPKR+KT+GEVERRIVSQ
Sbjct: 265  LINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQ 324

Query: 898  LLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 1077
            LLTLMDG+K  +H+IVM ATNRPNSIDPALRRFGRFDREIDIG+PD  GRLEVLRIHTKN
Sbjct: 325  LLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKN 384

Query: 1078 MKLSEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAEILNSMAV 1257
            MKL +DVDLE+I+ ++HG+VGADLA+LC+E+ALQ IREKMD+IDLEDD IDAE+L S+AV
Sbjct: 385  MKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAV 444

Query: 1258 TNEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG 1437
            T E+F+ A+  S+PSALRETVVEVPN  W DIGGLE+VK+ELQE VQYPVEHP+KF KFG
Sbjct: 445  TMENFRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFG 504

Query: 1438 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 1617
            M PS+GVLFYGPPGCGKTL AKAIANECQANFISVKGPELLTMWFGESEANVR+IFDK  
Sbjct: 505  MQPSRGVLFYGPPGCGKTLPAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKGP 564

Query: 1618 QSAPCVLFFDELDSIATQICLN 1683
             +APCVLFFDELDSIA   C N
Sbjct: 565  SAAPCVLFFDELDSIAKSRCGN 586



 Score =  244 bits (624), Expect(2) = 0.0
 Identities = 122/174 (70%), Positives = 142/174 (81%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            +NQ+LTEMDGM AKK VFIIGATNRPDIID A+LRPGRLDQLIYIPLPD+ SR +I KA 
Sbjct: 597  INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKAN 656

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAM 2164
            LRK  ++K+VDL  +AK TQGFSGAD+TEICQRACK AIR+ IE +I REK R+EN  + 
Sbjct: 657  LRKFALAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSA 716

Query: 2165 EEDVDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 2326
             +D DD V EI +AHFEE+MK+ARRSVSD DIRKY+ FA   +QSRGFG  FRF
Sbjct: 717  MDDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAPDFEQSRGFGQNFRF 770



 Score =  190 bits (482), Expect = 2e-45
 Identities = 97/252 (38%), Positives = 158/252 (62%), Gaps = 10/252 (3%)
 Frame = +1

Query: 559  QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 738
            +++ELV+ P+ HP  F   G++P +G+L YGPPG GKTL A+A+ANE  A F  + GPE+
Sbjct: 485  ELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLPAKAIANECQANFISVKGPEL 544

Query: 739  MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE--VERRIVSQLLTLM 912
            ++   GESE+N+R  F++    AP ++F DE+DSIA  R    G+     R+++Q+LT M
Sbjct: 545  LTMWFGESEANVRDIFDKGPSAAPCVLFFDELDSIAKSRCGNVGDCGAADRVINQILTEM 604

Query: 913  DGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSE 1092
            DG+ ++ +V ++GATNRP+ IDPA+ R GR D+ I I +PD+  R  +L+ + +   L++
Sbjct: 605  DGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKFALAK 664

Query: 1093 DVDLERISKDTHGYVGADLAALCTESALQCIREKMDV--------IDLEDDSIDAEILNS 1248
            +VDL  I+K T G+ GADL  +C  +    IR+ ++          + ++ ++D E    
Sbjct: 665  EVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDDEDDPV 724

Query: 1249 MAVTNEHFKTAL 1284
              +T+ HF+ A+
Sbjct: 725  PEITSAHFEEAM 736



 Score = 81.6 bits (200), Expect = 1e-12
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            ++QLLT MDGM     + ++ ATNRP+ ID AL R GR D+ I I +PD   RL + +  
Sbjct: 322  VSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIH 381

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEK-DIEREKRRSE 2149
             +   +  DVDL  +A  + G  GAD+  +C  A    IRE ++  D+E +K  +E
Sbjct: 382  TKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAE 437


>pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
            gi|7378614|emb|CAB83290.1| transitional endoplasmic
            reticulum ATPase [Arabidopsis thaliana]
          Length = 843

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 526/557 (94%), Positives = 536/557 (96%)
 Frame = +1

Query: 1    VDEAINDDNSVVSMHPDTMEKLTLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKV 180
            VDEAINDDNSVVS+HP TMEKL LFRGDTILIKGKKRKDT+CIALADETCEEPKIRMNKV
Sbjct: 65   VDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKV 124

Query: 181  VRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDVYLKPYFLEAYRPVR 360
            VRSNLRVRLGDV+SVHQCPDVKYGKRVHILPVDDT+EG+TGNLFD YLKPYFLEAYRPVR
Sbjct: 125  VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 184

Query: 361  KGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPVKREXXXXXXXXXXXXXXX 540
            KGDLFLVRGGMRSVEFKVIETDPAEYCVV+PDTEIFCEGEPVKRE               
Sbjct: 185  KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGG 244

Query: 541  XRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 720
             RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC
Sbjct: 245  VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 304

Query: 721  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 900
            INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL
Sbjct: 305  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 364

Query: 901  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 1080
            LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM
Sbjct: 365  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 424

Query: 1081 KLSEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAEILNSMAVT 1260
            KL+EDVDLERISKDTHGYVGADLAALCTE+ALQCIREKMDVIDLEDDSIDAEILNSMAV+
Sbjct: 425  KLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVS 484

Query: 1261 NEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 1440
            NEHF TALG SNPSALRETVVEVPNV+WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM
Sbjct: 485  NEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 544

Query: 1441 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 1620
            SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ
Sbjct: 545  SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 604

Query: 1621 SAPCVLFFDELDSIATQ 1671
            SAPCVLFFDELDSIATQ
Sbjct: 605  SAPCVLFFDELDSIATQ 621



 Score =  323 bits (827), Expect = 2e-85
 Identities = 164/175 (93%), Positives = 171/175 (97%), Gaps = 1/175 (0%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            LNQLLTEMDGM+AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDE SRL+IFKAC
Sbjct: 637  LNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAC 696

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAM 2164
            LRKSPV+KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE E+RRS+NPEAM
Sbjct: 697  LRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAM 756

Query: 2165 EED-VDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 2326
            EED VDDEVSEI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 757  EEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 811



 Score =  195 bits (496), Expect = 5e-47
 Identities = 94/224 (41%), Positives = 152/224 (67%), Gaps = 3/224 (1%)
 Frame = +1

Query: 559  QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 738
            +++E V+ P+ HP+ F+  G+ P KG+L YGPPG GKTL+A+A+ANE  A F  + GPE+
Sbjct: 524  ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 583

Query: 739  MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTL 909
            ++   GESE+N+R+ F++A ++AP ++F DE+DSIA +R  + G+      R+++QLLT 
Sbjct: 584  LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTE 643

Query: 910  MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLS 1089
            MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +   +   ++
Sbjct: 644  MDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVA 703

Query: 1090 EDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDD 1221
            +DVD+  ++K T G+ GAD+  +C  +    IRE ++  D+E++
Sbjct: 704  KDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEK-DIENE 746



 Score = 89.7 bits (221), Expect = 4e-15
 Identities = 44/104 (42%), Positives = 67/104 (64%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            ++QLLT MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +  
Sbjct: 361  VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIH 420

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIE 2116
             +   +++DVDL  ++K T G+ GAD+  +C  A    IRE ++
Sbjct: 421  TKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 464


>ref|NP_568114.1| cell division control protein 48-e [Arabidopsis thaliana]
            gi|28201771|sp|Q9LZF6.2|CD48E_ARATH RecName: Full=Cell
            division control protein 48 homolog E; Short=AtCDC48e;
            AltName: Full=Transitional endoplasmic reticulum ATPase E
            gi|26449352|dbj|BAC41803.1| putative transitional
            endoplasmic reticulum ATPase [Arabidopsis thaliana]
            gi|26452166|dbj|BAC43171.1| putative transitional
            endoplasmic reticulum ATPase [Arabidopsis thaliana]
            gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis
            thaliana] gi|332003204|gb|AED90587.1| cell division
            control protein 48-e [Arabidopsis thaliana]
          Length = 810

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 526/557 (94%), Positives = 536/557 (96%)
 Frame = +1

Query: 1    VDEAINDDNSVVSMHPDTMEKLTLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKV 180
            VDEAINDDNSVVS+HP TMEKL LFRGDTILIKGKKRKDT+CIALADETCEEPKIRMNKV
Sbjct: 32   VDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKV 91

Query: 181  VRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDVYLKPYFLEAYRPVR 360
            VRSNLRVRLGDV+SVHQCPDVKYGKRVHILPVDDT+EG+TGNLFD YLKPYFLEAYRPVR
Sbjct: 92   VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 151

Query: 361  KGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPVKREXXXXXXXXXXXXXXX 540
            KGDLFLVRGGMRSVEFKVIETDPAEYCVV+PDTEIFCEGEPVKRE               
Sbjct: 152  KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGG 211

Query: 541  XRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 720
             RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC
Sbjct: 212  VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 271

Query: 721  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 900
            INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL
Sbjct: 272  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 331

Query: 901  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 1080
            LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM
Sbjct: 332  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 391

Query: 1081 KLSEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAEILNSMAVT 1260
            KL+EDVDLERISKDTHGYVGADLAALCTE+ALQCIREKMDVIDLEDDSIDAEILNSMAV+
Sbjct: 392  KLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVS 451

Query: 1261 NEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 1440
            NEHF TALG SNPSALRETVVEVPNV+WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM
Sbjct: 452  NEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 511

Query: 1441 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 1620
            SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ
Sbjct: 512  SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 571

Query: 1621 SAPCVLFFDELDSIATQ 1671
            SAPCVLFFDELDSIATQ
Sbjct: 572  SAPCVLFFDELDSIATQ 588



 Score =  323 bits (827), Expect = 2e-85
 Identities = 164/175 (93%), Positives = 171/175 (97%), Gaps = 1/175 (0%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            LNQLLTEMDGM+AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDE SRL+IFKAC
Sbjct: 604  LNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAC 663

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAM 2164
            LRKSPV+KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE E+RRS+NPEAM
Sbjct: 664  LRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAM 723

Query: 2165 EED-VDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 2326
            EED VDDEVSEI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 724  EEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778



 Score =  195 bits (496), Expect = 5e-47
 Identities = 94/224 (41%), Positives = 152/224 (67%), Gaps = 3/224 (1%)
 Frame = +1

Query: 559  QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 738
            +++E V+ P+ HP+ F+  G+ P KG+L YGPPG GKTL+A+A+ANE  A F  + GPE+
Sbjct: 491  ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 550

Query: 739  MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTL 909
            ++   GESE+N+R+ F++A ++AP ++F DE+DSIA +R  + G+      R+++QLLT 
Sbjct: 551  LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTE 610

Query: 910  MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLS 1089
            MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +   +   ++
Sbjct: 611  MDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVA 670

Query: 1090 EDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDD 1221
            +DVD+  ++K T G+ GAD+  +C  +    IRE ++  D+E++
Sbjct: 671  KDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEK-DIENE 713



 Score = 89.7 bits (221), Expect = 4e-15
 Identities = 44/104 (42%), Positives = 67/104 (64%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            ++QLLT MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +  
Sbjct: 328  VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIH 387

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIE 2116
             +   +++DVDL  ++K T G+ GAD+  +C  A    IRE ++
Sbjct: 388  TKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 431


>ref|NP_187595.1| cell division control protein 48-A [Arabidopsis thaliana]
            gi|1705677|sp|P54609.1|CD48A_ARATH RecName: Full=Cell
            division control protein 48 homolog A; Short=AtCDC48a
            gi|6681343|gb|AAF23260.1|AC015985_18 putative
            transitional endoplasmic reticulum ATPase [Arabidopsis
            thaliana] gi|1019904|gb|AAC49120.1| cell division cycle
            protein [Arabidopsis thaliana] gi|17473551|gb|AAL38252.1|
            putative transitional endoplasmic reticulum ATPase
            [Arabidopsis thaliana] gi|20453130|gb|AAM19807.1|
            AT3g09840/F8A24_11 [Arabidopsis thaliana]
            gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct]
            gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis
            thaliana] gi|332641299|gb|AEE74820.1| cell division
            control protein 48-A [Arabidopsis thaliana]
          Length = 809

 Score = 1051 bits (2717), Expect = 0.0
 Identities = 526/557 (94%), Positives = 535/557 (96%)
 Frame = +1

Query: 1    VDEAINDDNSVVSMHPDTMEKLTLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKV 180
            VDEAINDDNSVVS+HP TMEKL LFRGDTILIKGKKRKDT+CIALADETCEEPKIRMNKV
Sbjct: 32   VDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKV 91

Query: 181  VRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDVYLKPYFLEAYRPVR 360
            VRSNLRVRLGDV+SVHQCPDVKYGKRVHILPVDDT+EG+TGNLFD YLKPYFLEAYRPVR
Sbjct: 92   VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 151

Query: 361  KGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPVKREXXXXXXXXXXXXXXX 540
            KGDLFLVRGGMRSVEFKVIETDPAEYCVV+PDTEIFCEGEPVKRE               
Sbjct: 152  KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGG 211

Query: 541  XRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 720
             RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC
Sbjct: 212  VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 271

Query: 721  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 900
            INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL
Sbjct: 272  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 331

Query: 901  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 1080
            LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM
Sbjct: 332  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 391

Query: 1081 KLSEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAEILNSMAVT 1260
            KL+EDVDLERISKDTHGYVGADLAALCTE+ALQCIREKMDVIDLEDDSIDAEILNSMAVT
Sbjct: 392  KLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVT 451

Query: 1261 NEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 1440
            NEHF TALG SNPSALRETVVEVPNV+W DIGGLENVKRELQETVQYPVEHPEKFEKFGM
Sbjct: 452  NEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGM 511

Query: 1441 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 1620
            SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ
Sbjct: 512  SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 571

Query: 1621 SAPCVLFFDELDSIATQ 1671
            SAPCVLFFDELDSIATQ
Sbjct: 572  SAPCVLFFDELDSIATQ 588



 Score =  322 bits (826), Expect = 2e-85
 Identities = 163/177 (92%), Positives = 171/177 (96%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            LNQLLTEMDGM+AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDE SRL+IFKA 
Sbjct: 605  LNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAA 664

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAM 2164
            LRKSP++KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE+EKRRSENPEAM
Sbjct: 665  LRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAM 724

Query: 2165 EEDVDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADN 2335
            EED  DEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF ++
Sbjct: 725  EEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFENS 781



 Score =  193 bits (490), Expect = 2e-46
 Identities = 95/230 (41%), Positives = 151/230 (65%), Gaps = 4/230 (1%)
 Frame = +1

Query: 559  QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 738
            +++E V+ P+ HP+ F+  G+ P KG+L YGPPG GKTL+A+A+ANE  A F  + GPE+
Sbjct: 491  ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 550

Query: 739  MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR----EKTNGEVERRIVSQLLT 906
            ++   GESE+N+R+ F++A ++AP ++F DE+DSIA +R        G    R+++QLLT
Sbjct: 551  LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLT 610

Query: 907  LMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKL 1086
             MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +   +   +
Sbjct: 611  EMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPI 670

Query: 1087 SEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAE 1236
            ++DVD+  ++K T G+ GAD+  +C  +    IRE ++  D+E +   +E
Sbjct: 671  AKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEK-DIEKEKRRSE 719



 Score = 89.7 bits (221), Expect = 4e-15
 Identities = 44/104 (42%), Positives = 67/104 (64%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            ++QLLT MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +  
Sbjct: 328  VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIH 387

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIE 2116
             +   +++DVDL  ++K T G+ GAD+  +C  A    IRE ++
Sbjct: 388  TKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 431


>ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
            lyrata] gi|297318924|gb|EFH49346.1| hypothetical protein
            ARALYDRAFT_908201 [Arabidopsis lyrata subsp. lyrata]
          Length = 810

 Score = 1050 bits (2715), Expect = 0.0
 Identities = 525/557 (94%), Positives = 536/557 (96%)
 Frame = +1

Query: 1    VDEAINDDNSVVSMHPDTMEKLTLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKV 180
            VDEAINDDNSVVS+HP TMEKL LFRGDTILIKGKKRKDT+CIALADETCEEP+IRMNKV
Sbjct: 32   VDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPRIRMNKV 91

Query: 181  VRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDVYLKPYFLEAYRPVR 360
            VRSNLRVRLGDV+SVHQCPDVKYGKRVHILPVDDT+EG+TGNLFD YLKPYFLEAYRPVR
Sbjct: 92   VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 151

Query: 361  KGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPVKREXXXXXXXXXXXXXXX 540
            KGDLFLVRGGMRSVEFKVIETDPAEYCVV+PDTEIFCEGEPVKRE               
Sbjct: 152  KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGG 211

Query: 541  XRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 720
             RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC
Sbjct: 212  VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 271

Query: 721  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 900
            INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL
Sbjct: 272  INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQL 331

Query: 901  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 1080
            LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM
Sbjct: 332  LTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNM 391

Query: 1081 KLSEDVDLERISKDTHGYVGADLAALCTESALQCIREKMDVIDLEDDSIDAEILNSMAVT 1260
            KL+EDVDLERISKDTHGYVGADLAALCTE+ALQCIREKMDVIDLEDDSIDAEILNSMAV+
Sbjct: 392  KLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVS 451

Query: 1261 NEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 1440
            NEHF TALG SNPSALRETVVEVPNV+WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM
Sbjct: 452  NEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM 511

Query: 1441 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 1620
            SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ
Sbjct: 512  SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 571

Query: 1621 SAPCVLFFDELDSIATQ 1671
            SAPCVLFFDELDSIATQ
Sbjct: 572  SAPCVLFFDELDSIATQ 588



 Score =  323 bits (827), Expect = 2e-85
 Identities = 164/175 (93%), Positives = 171/175 (97%), Gaps = 1/175 (0%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            LNQLLTEMDGM+AKKTVFIIGATNRPDIID ALLRPGRLDQLIYIPLPDE SRL+IFKAC
Sbjct: 604  LNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRLNIFKAC 663

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSENPEAM 2164
            LRKSPV+KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE+E+RRSENPEAM
Sbjct: 664  LRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSENPEAM 723

Query: 2165 EED-VDDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 2326
            EED VDDEVSEI+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 724  EEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778



 Score =  197 bits (502), Expect = 9e-48
 Identities = 100/257 (38%), Positives = 162/257 (63%), Gaps = 15/257 (5%)
 Frame = +1

Query: 559  QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 738
            +++E V+ P+ HP+ F+  G+ P KG+L YGPPG GKTL+A+A+ANE  A F  + GPE+
Sbjct: 491  ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 550

Query: 739  MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGE---VERRIVSQLLTL 909
            ++   GESE+N+R+ F++A ++AP ++F DE+DSIA +R  + G+      R+++QLLT 
Sbjct: 551  LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTE 610

Query: 910  MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLS 1089
            MDG+ ++  V ++GATNRP+ IDPAL R GR D+ I I +PDE  RL + +   +   ++
Sbjct: 611  MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVA 670

Query: 1090 EDVDLERISKDTHGYVGADLAALCTESALQCIREKMD------------VIDLEDDSIDA 1233
            +DVD+  ++K T G+ GAD+  +C  +    IRE ++               +E+D +D 
Sbjct: 671  KDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSENPEAMEEDMVDD 730

Query: 1234 EILNSMAVTNEHFKTAL 1284
            E+    A    HF+ ++
Sbjct: 731  EVSEIRAA---HFEESM 744



 Score = 89.7 bits (221), Expect = 4e-15
 Identities = 44/104 (42%), Positives = 67/104 (64%)
 Frame = +2

Query: 1805 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRLSIFKAC 1984
            ++QLLT MDG+ ++  V ++GATNRP+ ID AL R GR D+ I I +PDE  RL + +  
Sbjct: 328  VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIH 387

Query: 1985 LRKSPVSKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIE 2116
             +   +++DVDL  ++K T G+ GAD+  +C  A    IRE ++
Sbjct: 388  TKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 431