BLASTX nr result
ID: Coptis25_contig00000069
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000069
(2158 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524432.1| transcription initiation factor ia, putative... 204 6e-50
ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcr... 197 1e-47
emb|CBI37506.3| unnamed protein product [Vitis vinifera] 197 1e-47
ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcr... 193 2e-46
ref|XP_004133864.1| PREDICTED: RNA polymerase I-specific transcr... 193 2e-46
>ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis]
gi|223536316|gb|EEF37967.1| transcription initiation
factor ia, putative [Ricinus communis]
Length = 640
Score = 204 bits (520), Expect = 6e-50
Identities = 101/166 (60%), Positives = 126/166 (75%)
Frame = +3
Query: 828 LQPDVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFY 1007
L +V A+ LD LMV + EH++ CA++ RL +VFETLL SF IL +KSKFAQFV+FY
Sbjct: 294 LGENVAADLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQFVMFY 353
Query: 1008 ACSLDPEVCGEIFAKKLYKSFVYGATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLA 1187
AC+LDPE CG FA++L F YG PL RMSAVAYLASYLAR +FLP V STL+ L
Sbjct: 354 ACALDPENCGVEFAERLRDRFTYGENPLTRMSAVAYLASYLARAKFLPIAFVASTLKRLV 413
Query: 1188 DWCSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDL 1325
DWCS+YC++ Q+ MNP+ H+VFYSGCQA++YVLCFRM S+MD+
Sbjct: 414 DWCSEYCRN---QDGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDI 456
Score = 182 bits (463), Expect = 2e-43
Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 17/218 (7%)
Frame = +1
Query: 25 YTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIGVLNSTKRYNPDQVASLVTSLRALSRV 204
YTDS++V VRDAL SV D T+ Y QL+GV++ ++R PD VA L+TSL+ALS
Sbjct: 23 YTDSDLVYHVRDALHSVQYGD----TNSYDQLVGVMHHSQRLTPDDVALLLTSLKALSGA 78
Query: 205 TSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALMELIVSLSASG--YVVQCLHMLVKSFTP 378
SYID HH LL SIF + +W+YG DVM+AL+ELI++L+AS Y+ CL MLV +F P
Sbjct: 79 VSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLELIIALAASNGKYIDPCLKMLVTNFVP 138
Query: 379 PKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADLVPLAPTTLQFRVLELMPHITN----- 543
P + +L PRG AKK++VL R+H+AL++IA L+P+A + L V+ + I
Sbjct: 139 PMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHLIPMAASRLSTEVVSEIQRIPTTFKKD 198
Query: 544 ----------ENEVYVENMLRLESGVFGTYLGKEILRA 627
E+YVENMLRLESG ++G +L A
Sbjct: 199 QYHEKDRVKYRTEIYVENMLRLESGAIREFVGSRMLMA 236
Score = 112 bits (281), Expect = 3e-22
Identities = 60/133 (45%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Frame = +1
Query: 1492 FENLLESELSRTYGGMERLDMFFPFDPCLLKNCDR-FIRPNFIYWSLANFTREHXXXXXX 1668
FE++LESE S+ +GG+ERLDMFFPFDPCLL+ CDR FIRPNF+YW T
Sbjct: 508 FEDVLESEFSKDFGGLERLDMFFPFDPCLLRTCDRSFIRPNFVYWKDVRTTYGSDEEDSS 567
Query: 1669 XXXXXXXXXXXXXXXVRESGMGMSYDGHEHELDAFENSIRQMSITP------NISVMHNM 1830
E GM S DG +LD F+ ++ +MSITP M
Sbjct: 568 DEDIAEDFTDINGGSYMEEGMATSLDGQHLDLDEFDYAMNKMSITPKNRFGIRFGERMQM 627
Query: 1831 PARLRPSTSPESL 1869
P+++RPSTSPESL
Sbjct: 628 PSKIRPSTSPESL 640
>ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation factor
RRN3-like [Vitis vinifera]
Length = 636
Score = 197 bits (500), Expect = 1e-47
Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)
Frame = +3
Query: 837 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1016
++ AEKLD LMVL EH++SC GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+
Sbjct: 291 NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 350
Query: 1017 LDPEVCGEIFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 1193
LDPE CG FA+ L FV PL RMSAVAYLASYL+RG+FL + V + LE L W
Sbjct: 351 LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 410
Query: 1194 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDL 1325
C +YCK I + +NP+ H+VFYSGCQA+MYVLCFRMRS+M++
Sbjct: 411 CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNV 451
Score = 188 bits (478), Expect = 4e-45
Identities = 111/215 (51%), Positives = 142/215 (66%), Gaps = 14/215 (6%)
Frame = +1
Query: 25 YTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIGVLNSTKRYNPDQVASLVTSLRALSRV 204
++DSE+V VR AL+SV D +D Y QLIGVL+ +R PD+VA LVTSL+ALS
Sbjct: 20 FSDSELVYHVRHALQSVPLGD----SDSYDQLIGVLHHKERLAPDEVALLVTSLKALSGA 75
Query: 205 TSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALMELIVSLSA-SGYVVQC-LHMLVKSFTP 378
S ID HH SLL SIF + +W+YG DVMDAL+ELI+SL+A SG + C L MLV +F P
Sbjct: 76 VSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGNYLDCSLDMLVSNFMP 135
Query: 379 PKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADLVPLAPTTLQFRVLELMPHITNEN--- 549
P S L L QPRG+A+K +VL RVHS LK+IADLVPLAP+ L V++ MP++ +
Sbjct: 136 PYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPIVIQRMPNVFTKEPVS 195
Query: 550 ---------EVYVENMLRLESGVFGTYLGKEILRA 627
++YVENMLRLE G +G +L A
Sbjct: 196 SICSTLFRIQIYVENMLRLEGGAIRELVGNMMLVA 230
Score = 137 bits (345), Expect = 1e-29
Identities = 68/138 (49%), Positives = 86/138 (62%), Gaps = 8/138 (5%)
Frame = +1
Query: 1480 ERLVFENLLESELSRTYGGMERLDMFFPFDPCLLKNCDRFIRPNFIYWSLANFTREHXXX 1659
E +F +LLESELSR +GG+ERLDMFFPFDPCLLK CDRFIRPNF+YWS+ T +
Sbjct: 499 ETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRFIRPNFVYWSMIRTTYDDGED 558
Query: 1660 XXXXXXXXXXXXXXXXXXVRESGMGMSYDGHEHELDAFENSIRQMSITPNISVMH----- 1824
+ + M SYD H+ ELD F++S+ +MSITP S+ +
Sbjct: 559 SSDEEPAEDYEASHPDDVMNDDAMARSYDSHDLELDEFDHSMNKMSITPKNSLYYRFGDE 618
Query: 1825 ---NMPARLRPSTSPESL 1869
MP+R+RPSTSPESL
Sbjct: 619 LKVQMPSRIRPSTSPESL 636
>emb|CBI37506.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 197 bits (500), Expect = 1e-47
Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)
Frame = +3
Query: 837 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1016
++ AEKLD LMVL EH++SC GRLIEVFETL+ SF+T +L A KSKFAQFV+FYAC+
Sbjct: 282 NLIAEKLDSLMVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACA 341
Query: 1017 LDPEVCGEIFAKKLYKSFVYGA-TPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 1193
LDPE CG FA+ L FV PL RMSAVAYLASYL+RG+FL + V + LE L W
Sbjct: 342 LDPENCGVRFARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVW 401
Query: 1194 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDL 1325
C +YCK I + +NP+ H+VFYSGCQA+MYVLCFRMRS+M++
Sbjct: 402 CLEYCK---IHDGDINPKAHQVFYSGCQAIMYVLCFRMRSMMNV 442
Score = 191 bits (484), Expect = 9e-46
Identities = 111/206 (53%), Positives = 141/206 (68%), Gaps = 5/206 (2%)
Frame = +1
Query: 25 YTDSEIVLFVRDALKSVTNTDDENYTDHYSQLIGVLNSTKRYNPDQVASLVTSLRALSRV 204
++DSE+V VR AL+SV D +D Y QLIGVL+ +R PD+VA LVTSL+ALS
Sbjct: 20 FSDSELVYHVRHALQSVPLGD----SDSYDQLIGVLHHKERLAPDEVALLVTSLKALSGA 75
Query: 205 TSYIDSYHHGSLLDSIFDIKMWDYGTDVMDALMELIVSLSA-SGYVVQC-LHMLVKSFTP 378
S ID HH SLL SIF + +W+YG DVMDAL+ELI+SL+A SG + C L MLV +F P
Sbjct: 76 VSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGNYLDCSLDMLVSNFMP 135
Query: 379 PKSFLPLLSQPRGIAKKKEVLDRVHSALKEIADLVPLAPTTLQFRVLELMPHITNENE-- 552
P S L L QPRG+A+K +VL RVHS LK+IADLVPLAP+ L V++ MP++ +
Sbjct: 136 PYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPIVIQRMPNVFTKEPLI 195
Query: 553 -VYVENMLRLESGVFGTYLGKEILRA 627
+YVENMLRLE G +G +L A
Sbjct: 196 MIYVENMLRLEGGAIRELVGNMMLVA 221
Score = 114 bits (285), Expect = 1e-22
Identities = 63/138 (45%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Frame = +1
Query: 1480 ERLVFENLLESELSRTYGGMERLDMFFPFDPCLLKNCDRFIRPNFIYWSLANFTREHXXX 1659
E +F +LLESELSR +GG+ERLDMFFPFDPCLLK CDRFIRPNF+YWS+ T +
Sbjct: 490 ETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRFIRPNFVYWSMIRTTYDDGED 549
Query: 1660 XXXXXXXXXXXXXXXXXXVRESGMGMSYDGHEHELDAFENSIRQMSITPNISVMH----- 1824
S + D D F++S+ +MSITP S+ +
Sbjct: 550 --------------------SSDEEPAEDYEASHPDDFDHSMNKMSITPKNSLYYRFGDE 589
Query: 1825 ---NMPARLRPSTSPESL 1869
MP+R+RPSTSPESL
Sbjct: 590 LKVQMPSRIRPSTSPESL 607
>ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation factor
RRN3-like [Cucumis sativus]
Length = 625
Score = 193 bits (490), Expect = 2e-46
Identities = 98/164 (59%), Positives = 123/164 (75%), Gaps = 1/164 (0%)
Frame = +3
Query: 837 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1016
+V AE LD L+VL EH++SC DGRL EVF+ LL SF+ +L A+KSKFAQF++FYACS
Sbjct: 281 NVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACS 340
Query: 1017 LDPEVCGEIFAKKLYKSFV-YGATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 1193
LDPEVCG FA L FV PLIRMSAV+YLAS+L+RG+FL + LV + L+ L DW
Sbjct: 341 LDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDW 400
Query: 1194 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDL 1325
C +Y K+ + NP+ HKVFYSGCQA+MYVLCFRMRSI+++
Sbjct: 401 CLEYGKTLNVDP---NPKAHKVFYSGCQAIMYVLCFRMRSILEI 441
Score = 187 bits (474), Expect = 1e-44
Identities = 103/205 (50%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Frame = +1
Query: 28 TDSEIVLFVRDALKSVTNTDDENYTDHYSQLIGVLNSTKRYNPDQVASLVTSLRALSRVT 207
TD+++V F+R L SV+ D D Y+QL+GV++ R +PD+VA LVT L+ALS
Sbjct: 21 TDAQLVDFIRGFLSSVSLGD----IDGYNQLVGVIHHRDRLSPDEVALLVTCLKALSGAV 76
Query: 208 SYIDSYHHGSLLDSIFDIKMWDYGTDVMDALMELIVSLSASG--YVVQCLHMLVKSFTPP 381
S ID H SLL +IF + +WDYG++VMDAL+ELI+SL+ S YV CL MLV +F PP
Sbjct: 77 SCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPP 136
Query: 382 KSFLPLLSQPRGIAKKKEVLDRVHSALKEIADLVPLAPTTLQFRVLELMPHI-TNEN--E 552
S++ LL +P G+ +K+EVL RVH+ALK+I+DLVPLAP L+ +V+ M + NE+
Sbjct: 137 NSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTT 196
Query: 553 VYVENMLRLESGVFGTYLGKEILRA 627
+YVENMLRLE G ++G++IL A
Sbjct: 197 IYVENMLRLEKGALSEFVGRKILTA 221
Score = 110 bits (275), Expect = 2e-21
Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 10/138 (7%)
Frame = +1
Query: 1480 ERLVFENLLESELSRTYGGMERLDMFFPFDPCLLKNCDRFIRPNFIYWSLANFTREHXXX 1659
E +F LLES+ SR++GG+ERLDMFFPFDPCLLK CDR++RP+F+YWS+ T +
Sbjct: 489 ENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVRPTYDEEEE 548
Query: 1660 XXXXXXXXXXXXXXXXXXVRES-----GMGMSYDGHEHELDAFENSIRQMSITPNISVMH 1824
+ E+ M +SYD + +LD + + +MSITP S+ +
Sbjct: 549 EEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLD---SGLNKMSITPRNSLQY 605
Query: 1825 -----NMPARLRPSTSPE 1863
MP+R+RPS SPE
Sbjct: 606 RCDFVQMPSRIRPSMSPE 623
>ref|XP_004133864.1| PREDICTED: RNA polymerase I-specific transcription initiation factor
RRN3-like [Cucumis sativus]
Length = 626
Score = 193 bits (490), Expect = 2e-46
Identities = 98/164 (59%), Positives = 123/164 (75%), Gaps = 1/164 (0%)
Frame = +3
Query: 837 DVCAEKLDRLMVLMCEHIKSCADDGRLIEVFETLLTSFETAILPAHKSKFAQFVIFYACS 1016
+V AE LD L+VL EH++SC DGRL EVF+ LL SF+ +L A+KSKFAQF++FYACS
Sbjct: 281 NVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACS 340
Query: 1017 LDPEVCGEIFAKKLYKSFV-YGATPLIRMSAVAYLASYLARGRFLPSDLVVSTLESLADW 1193
LDPEVCG FA L FV PLIRMSAV+YLAS+L+RG+FL + LV + L+ L DW
Sbjct: 341 LDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDW 400
Query: 1194 CSKYCKSQAIQEKSMNPELHKVFYSGCQAVMYVLCFRMRSIMDL 1325
C +Y K+ + NP+ HKVFYSGCQA+MYVLCFRMRSI+++
Sbjct: 401 CLEYGKTLNVDP---NPKAHKVFYSGCQAIMYVLCFRMRSILEI 441
Score = 187 bits (474), Expect = 1e-44
Identities = 103/205 (50%), Positives = 143/205 (69%), Gaps = 5/205 (2%)
Frame = +1
Query: 28 TDSEIVLFVRDALKSVTNTDDENYTDHYSQLIGVLNSTKRYNPDQVASLVTSLRALSRVT 207
TD+++V F+R L SV+ D D Y+QL+GV++ R +PD+VA LVT L+ALS
Sbjct: 21 TDAQLVDFIRGFLSSVSLGD----IDGYNQLVGVIHHRDRLSPDEVALLVTCLKALSGAV 76
Query: 208 SYIDSYHHGSLLDSIFDIKMWDYGTDVMDALMELIVSLSASG--YVVQCLHMLVKSFTPP 381
S ID H SLL +IF + +WDYG++VMDAL+ELI+SL+ S YV CL MLV +F PP
Sbjct: 77 SCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPP 136
Query: 382 KSFLPLLSQPRGIAKKKEVLDRVHSALKEIADLVPLAPTTLQFRVLELMPHI-TNEN--E 552
S++ LL +P G+ +K+EVL RVH+ALK+I+DLVPLAP L+ +V+ M + NE+
Sbjct: 137 NSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTT 196
Query: 553 VYVENMLRLESGVFGTYLGKEILRA 627
+YVENMLRLE G ++G++IL A
Sbjct: 197 IYVENMLRLEKGALSEFVGRKILTA 221
Score = 109 bits (273), Expect = 3e-21
Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 11/139 (7%)
Frame = +1
Query: 1480 ERLVFENLLESELSRTYGGMERLDMFFPFDPCLLKNCDRFIRPNFIYWSLANFT------ 1641
E +F LLES+ SR++GG+ERLDMFFPFDPCLLK CDR++RP+F+YWS+ T
Sbjct: 489 ENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVRPTYDEEEE 548
Query: 1642 REHXXXXXXXXXXXXXXXXXXXXXVRESGMGMSYDGHEHELDAFENSIRQMSITPNISVM 1821
E + + M +SYD + +LD + + +MSITP S+
Sbjct: 549 EEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLD---SGLNKMSITPRNSLQ 605
Query: 1822 H-----NMPARLRPSTSPE 1863
+ MP+R+RPS SPE
Sbjct: 606 YRCDFVQMPSRIRPSMSPE 624