BLASTX nr result
ID: Coptis25_contig00000067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000067
(1006 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003519517.1| PREDICTED: chromodomain-helicase-DNA-binding... 200 4e-49
ref|XP_003545390.1| PREDICTED: chromodomain-helicase-DNA-binding... 197 3e-48
ref|XP_004156041.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain... 195 1e-47
ref|XP_004140283.1| PREDICTED: chromodomain-helicase-DNA-binding... 195 1e-47
emb|CBI24213.3| unnamed protein product [Vitis vinifera] 194 3e-47
>ref|XP_003519517.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
[Glycine max]
Length = 1767
Score = 200 bits (509), Expect = 4e-49
Identities = 105/226 (46%), Positives = 142/226 (62%), Gaps = 3/226 (1%)
Frame = -1
Query: 670 RHKGR--GKVGGGLKSNGERKSASKHSRQRRLKAPYDDDNSSAVDSEIDSEEDIIGRPKR 497
R KGR GK+G +KS ERK + RQRR+K+ ++D+ S+ DS+ D +ED KR
Sbjct: 307 RPKGRQRGKIGQNIKSTRERKVYAASGRQRRVKSSFEDNESTTEDSDSDGDEDFKSTKKR 366
Query: 496 GKHHRKNMSGRATMSYKSVEQHDXXXXXXXXXXXXXXXXXXXXXXVDEGKTK-NQKXXXX 320
H RKN +GR++ + ++ DE K K +QK
Sbjct: 367 SVHVRKN-NGRSSAATGFSSRNSEVRTSSRTVRKVSYVESEESEEADEAKKKKSQKEEIE 425
Query: 319 XXXXXXXERVLWHQPKGMAEDALRNHKSIQPSVLSHFLDSDPDWNETEFFIKWKSQSYLH 140
E+VLWHQPKGMAEDA RN++S +P ++SH DS+ DWNE EF IKWK QS+LH
Sbjct: 426 EDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSEIDWNEIEFLIKWKGQSHLH 485
Query: 139 CQWKPFSELRNLTGFKKVMNYTKRVMEERRFRKALSREEVEVRDVS 2
CQWK F+EL+NL+GFKKV+NYTK++ME+ R+R+ +SREE+EV DVS
Sbjct: 486 CQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVNDVS 531
>ref|XP_003545390.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
[Glycine max]
Length = 1764
Score = 197 bits (501), Expect = 3e-48
Identities = 105/226 (46%), Positives = 141/226 (62%), Gaps = 3/226 (1%)
Frame = -1
Query: 670 RHKGR--GKVGGGLKSNGERKSASKHSRQRRLKAPYDDDNSSAVDSEIDSEEDIIGRPKR 497
R KGR GK+G +KS +RK RQRR+K+ ++ + S+ DS+ DS+ED KR
Sbjct: 304 RPKGRQRGKIGQNIKSTRDRKVYVASGRQRRVKSSFEGNESTTEDSDSDSDEDFKSTKKR 363
Query: 496 GKHHRKNMSGRATMSYKSVEQHDXXXXXXXXXXXXXXXXXXXXXXVDEGKTK-NQKXXXX 320
H RKN +GR++ + ++ DEGK K +QK
Sbjct: 364 SVHVRKN-NGRSSAATGFSSRNSEIRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIE 422
Query: 319 XXXXXXXERVLWHQPKGMAEDALRNHKSIQPSVLSHFLDSDPDWNETEFFIKWKSQSYLH 140
E+VLWHQPKGMAEDA RN++S +P +LSH DS+ DWNE EF IKWK QS+LH
Sbjct: 423 EDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLLSHLFDSEIDWNEIEFLIKWKGQSHLH 482
Query: 139 CQWKPFSELRNLTGFKKVMNYTKRVMEERRFRKALSREEVEVRDVS 2
C WK F+EL+NL+GFKKV+NYTK++ME+ R+R+ +SREE+EV DVS
Sbjct: 483 CLWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVNDVS 528
>ref|XP_004156041.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 2-like [Cucumis sativus]
Length = 1761
Score = 195 bits (496), Expect = 1e-47
Identities = 111/230 (48%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Frame = -1
Query: 676 NTRHKGRGKVGG----GLKSNGERKSASKHSRQRRLKAPYDDDNSSAVDSEIDSEEDIIG 509
N KGRGK G +KS ERK RQR+ K Y++D SS DS DS E
Sbjct: 297 NYGKKGRGKQRGKGVRNVKSTSERKPYQSSIRQRKGKFSYEEDESSMEDSASDSVEAFKS 356
Query: 508 RPKRGKHHRKNMSGRATMSYKSVEQHDXXXXXXXXXXXXXXXXXXXXXXVDEGKTK-NQK 332
K G H RKN SGR +++ + DEGK K +QK
Sbjct: 357 SVKTGTHLRKN-SGRYSVTAGVSGRRSEVRTSSRSVRKVSYVESEESEEFDEGKKKKSQK 415
Query: 331 XXXXXXXXXXXERVLWHQPKGMAEDALRNHKSIQPSVLSHFLDSDPDWNETEFFIKWKSQ 152
E+VLWHQPKG AEDA+RN++ I P + SH DS+PDWNE EF IKWK Q
Sbjct: 416 EEVEEEDGDAIEKVLWHQPKGTAEDAIRNNRPIDPVLSSHSFDSEPDWNEVEFLIKWKGQ 475
Query: 151 SYLHCQWKPFSELRNLTGFKKVMNYTKRVMEERRFRKALSREEVEVRDVS 2
S+LHCQWKPFSEL+ L+GFKKV+NYTK+VM+E R+RK++SREE+EV DVS
Sbjct: 476 SHLHCQWKPFSELQYLSGFKKVLNYTKKVMDEIRYRKSVSREEIEVYDVS 525
>ref|XP_004140283.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
[Cucumis sativus]
Length = 1777
Score = 195 bits (496), Expect = 1e-47
Identities = 111/230 (48%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Frame = -1
Query: 676 NTRHKGRGKVGG----GLKSNGERKSASKHSRQRRLKAPYDDDNSSAVDSEIDSEEDIIG 509
N KGRGK G +KS ERK RQR+ K Y++D SS DS DS E
Sbjct: 297 NYGKKGRGKQRGKGVRNVKSTSERKPYQSSIRQRKGKFSYEEDESSMEDSASDSVEAFKS 356
Query: 508 RPKRGKHHRKNMSGRATMSYKSVEQHDXXXXXXXXXXXXXXXXXXXXXXVDEGKTK-NQK 332
K G H RKN SGR +++ + DEGK K +QK
Sbjct: 357 SVKTGTHLRKN-SGRYSVTAGVSGRRSEVRTSSRSVRKVSYVESEESEEFDEGKKKKSQK 415
Query: 331 XXXXXXXXXXXERVLWHQPKGMAEDALRNHKSIQPSVLSHFLDSDPDWNETEFFIKWKSQ 152
E+VLWHQPKG AEDA+RN++ I P + SH DS+PDWNE EF IKWK Q
Sbjct: 416 EEVEEEDGDAIEKVLWHQPKGTAEDAIRNNRPIDPVLSSHSFDSEPDWNEVEFLIKWKGQ 475
Query: 151 SYLHCQWKPFSELRNLTGFKKVMNYTKRVMEERRFRKALSREEVEVRDVS 2
S+LHCQWKPFSEL+ L+GFKKV+NYTK+VM+E R+RK++SREE+EV DVS
Sbjct: 476 SHLHCQWKPFSELQYLSGFKKVLNYTKKVMDEIRYRKSVSREEIEVYDVS 525
>emb|CBI24213.3| unnamed protein product [Vitis vinifera]
Length = 1539
Score = 194 bits (493), Expect = 3e-47
Identities = 100/220 (45%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Frame = -1
Query: 658 RGKVGGGLKSNGERKSASKHSRQRRLKAPYDDDNSSAVDSEIDSEEDIIGRPKRGKHHRK 479
RG G GLK E KS R++R + +D++S DSE DS+ED +RG H RK
Sbjct: 98 RGNSGRGLKPTKEHKSFPAPGRRKRGRTLLEDEDSYEKDSENDSDEDFKSMTRRGAHLRK 157
Query: 478 NMSGRATMSYKSVEQHDXXXXXXXXXXXXXXXXXXXXXXVDEGKTK-NQKXXXXXXXXXX 302
+ G+++ + + ++ +DEGK K +QK
Sbjct: 158 SKGGQSSTTANIIGRNSELRTSSRSVRKVSYVESEESEEIDEGKKKKSQKEEIEEEDCDS 217
Query: 301 XERVLWHQPKGMAEDALRNHKSIQPSVLSHFLDSDPDWNETEFFIKWKSQSYLHCQWKPF 122
E+VLWHQPKGMA++AL+N+KS +P +LSH D +P+WNE EF IKWK QS+LHCQWK F
Sbjct: 218 IEKVLWHQPKGMADEALKNNKSTEPILLSHLFDFEPNWNEMEFLIKWKGQSHLHCQWKSF 277
Query: 121 SELRNLTGFKKVMNYTKRVMEERRFRKALSREEVEVRDVS 2
S+L+NL+GFKKV+NYTK+VMEE ++R SREE+EV DVS
Sbjct: 278 SDLQNLSGFKKVLNYTKKVMEEVKYRNMFSREEIEVNDVS 317