BLASTX nr result
ID: Coptis24_contig00039968
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00039968
(323 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24
emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera] 116 2e-24
ref|XP_002530609.1| pentatricopeptide repeat-containing protein,... 107 8e-22
ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containi... 107 1e-21
ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containi... 99 3e-19
>ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 116 bits (291), Expect = 2e-24
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLS-SSCCLLDFGRQMHGLVIR 177
WNA+ITGC E +IAL +FR M + GV D YTFASVLS S LLDFGR++H LVI+
Sbjct: 153 WNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLELLDFGREVHTLVIK 212
Query: 178 SGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMI 318
+GFLV SV+NA L+MYF +AYEVFEEA+ + ITFN MI
Sbjct: 213 TGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMI 259
Score = 58.9 bits (141), Expect = 4e-07
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLS--SSCCLLDFGRQMHGLVI 174
WN +I+G + G L F +L + P+ YT + VLS +S L G+Q+HG ++
Sbjct: 451 WNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYIL 510
Query: 175 RSGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMIA 321
RSG + S+ NA ++MY K + +F GR + +++NAMI+
Sbjct: 511 RSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGR--DIVSWNAMIS 557
>emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera]
Length = 690
Score = 116 bits (291), Expect = 2e-24
Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLS-SSCCLLDFGRQMHGLVIR 177
WNA+ITGC E +IAL +FR M + GV D YTFASVLS S LLDFGR++H LVI+
Sbjct: 159 WNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLELLDFGREVHTLVIK 218
Query: 178 SGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMI 318
+GFLV SV+NA L+MYF +AYEVFEEA+ + ITFN MI
Sbjct: 219 TGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMI 265
>ref|XP_002530609.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529857|gb|EEF31789.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 684
Score = 107 bits (268), Expect = 8e-22
Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLSS-SCCLLDFGRQMHGLVIR 177
WNA+ITGC+E G ++I L FR M R GV D+Y+ ASVLS +++FG Q+H LVI+
Sbjct: 166 WNALITGCMESGNEEIGLNYFRDMCRSGVRHDNYSLASVLSGCKLVMVNFGMQVHSLVIK 225
Query: 178 SGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMI 318
SG LV SV+NA ++MYF E + Y VFEEA+ +QIT+N MI
Sbjct: 226 SGSLVEPSVINALITMYFNCENVLDGYLVFEEAEDSVRDQITYNVMI 272
Score = 56.2 bits (134), Expect = 3e-06
Identities = 35/107 (32%), Positives = 58/107 (54%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLSSSCCLLDFGRQMHGLVIRS 180
+N +I G V G + AL + R+ML + P+ TF S++SS C + G Q H I+
Sbjct: 268 YNVMIDGLVSVGRIEEALIICRKMLGSCLRPNELTFVSLMSS-CLHAEIGYQFHAQAIKM 326
Query: 181 GFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMIA 321
GF S+ NA ++MY + A +VFE + + + +++N MI+
Sbjct: 327 GFEASTSLSNATITMYSSCKDLHAARKVFERLERK--DPVSWNTMIS 371
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/107 (30%), Positives = 59/107 (55%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLSSSCCLLDFGRQMHGLVIRS 180
WN +I+ + +A+ + M R G PD +TF S+L+SS LL+ +H LV R+
Sbjct: 366 WNTMISSYTQGNFGRLAILAYLEMRRTGTEPDEFTFGSLLASS-ELLETVEMIHALVFRN 424
Query: 181 GFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMIA 321
+ + V NA S Y K +++Y++F + R + I++N++I+
Sbjct: 425 SLISNIQVSNALASAYSKHGNMEQSYQIFSDMSFR--DLISWNSIIS 469
>ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Glycine max]
Length = 722
Score = 107 bits (267), Expect = 1e-21
Identities = 58/108 (53%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLS-SSCCLLDFGRQMHGLVIR 177
WNAVITGC EKG D A G+FR M + GV D YTFA++LS S L D+GR +H +VI+
Sbjct: 146 WNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATMLSLCSLELFDYGRHVHSVVIK 205
Query: 178 SGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEA-KGRTSNQITFNAMI 318
SGFL SVVN+ ++MYFK +A EVFEEA +G + + +++NAMI
Sbjct: 206 SGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSRDYVSYNAMI 253
Score = 62.4 bits (150), Expect = 4e-08
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLS--SSCCLLDFGRQMHGLVI 174
WN++I+G + G L F +L V P+ Y+ + VLS SS + G+Q+HG ++
Sbjct: 444 WNSIISGFLMNGHPLQGLEQFSALLSTQVKPNAYSLSLVLSICSSMSAMSHGKQVHGYIL 503
Query: 175 RSGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMIA 321
R GF VS+ NA ++MY K +A VF+ R + IT+NA+I+
Sbjct: 504 RHGFSSEVSLGNALVTMYAKCGSLDKALRVFDAMVER--DTITWNAIIS 550
>ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Cucumis sativus]
Length = 735
Score = 99.4 bits (246), Expect = 3e-19
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLSSSCCLL-DFGRQMHGLVIR 177
WNA+ITG E G D +A+ F M + GV PD+Y+FA +LS + D GRQ+H VI+
Sbjct: 160 WNAMITGSAESGLDWVAMNTFYEMHKMGVKPDNYSFACILSLCTKEIEDLGRQVHSSVIK 219
Query: 178 SGFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMI 318
+G+L SVVNA ++MYF E ++AYEVFE + +QIT+N MI
Sbjct: 220 AGYLRKTSVVNALITMYFSIENLEDAYEVFEGTESEVRDQITYNVMI 266
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/106 (32%), Positives = 60/106 (56%)
Frame = +1
Query: 1 WNAVITGCVEKGEDDIALGMFRRMLRDGVMPDHYTFASVLSSSCCLLDFGRQMHGLVIRS 180
WNA+I+ V+ A+ F +M R G+ PD +TF S+L S ++ +H V ++
Sbjct: 360 WNAIISSYVQGNFGKSAVLAFLQMQRTGIGPDEFTFGSLLGVS-EFIEIVEMVHAYVYKN 418
Query: 181 GFLVIVSVVNAQLSMYFKFEMFKEAYEVFEEAKGRTSNQITFNAMI 318
G ++I+ ++NA +S Y K K++ +VF E + N I++N +I
Sbjct: 419 GLILIIEILNALVSAYAKCRKVKQSLQVFSEINSK--NIISWNTVI 462