BLASTX nr result

ID: Coptis24_contig00039927 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039927
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264351.2| PREDICTED: uncharacterized protein LOC100241...    69   5e-10
emb|CBI18109.3| unnamed protein product [Vitis vinifera]               69   5e-10
emb|CAN83105.1| hypothetical protein VITISV_007645 [Vitis vinifera]    69   5e-10
ref|XP_002526678.1| breast cancer type 2 susceptibility protein ...    65   6e-09
ref|XP_004156673.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    59   3e-07

>ref|XP_002264351.2| PREDICTED: uncharacterized protein LOC100241398 [Vitis vinifera]
          Length = 1126

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/70 (52%), Positives = 46/70 (65%)
 Frame = +1

Query: 31  LPGHMSSDMCKSSGKTPTVKFQTAGGRSISVSNDALQRAMSLLGDPEFGDLPINEGADGP 210
           +P    S+M   +   P +KF TAGGRSISVS+DALQRA SLLGDPE G   +NEG +  
Sbjct: 211 VPHLKQSEMYNPAPNPPPIKFHTAGGRSISVSSDALQRARSLLGDPELG-TSLNEGDEDD 269

Query: 211 LFSSLKENSF 240
           + SS  + SF
Sbjct: 270 MISSFLKGSF 279


>emb|CBI18109.3| unnamed protein product [Vitis vinifera]
          Length = 1134

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/70 (52%), Positives = 46/70 (65%)
 Frame = +1

Query: 31  LPGHMSSDMCKSSGKTPTVKFQTAGGRSISVSNDALQRAMSLLGDPEFGDLPINEGADGP 210
           +P    S+M   +   P +KF TAGGRSISVS+DALQRA SLLGDPE G   +NEG +  
Sbjct: 234 VPHLKQSEMYNPAPNPPPIKFHTAGGRSISVSSDALQRARSLLGDPELG-TSLNEGDEDD 292

Query: 211 LFSSLKENSF 240
           + SS  + SF
Sbjct: 293 MISSFLKGSF 302


>emb|CAN83105.1| hypothetical protein VITISV_007645 [Vitis vinifera]
          Length = 288

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/70 (52%), Positives = 46/70 (65%)
 Frame = +1

Query: 31  LPGHMSSDMCKSSGKTPTVKFQTAGGRSISVSNDALQRAMSLLGDPEFGDLPINEGADGP 210
           +P    S+M   +   P +KF TAGGRSISVS+DALQRA SLLGDPE G   +NEG +  
Sbjct: 211 VPHLKQSEMYNPAPNPPPIKFHTAGGRSISVSSDALQRARSLLGDPELG-TSLNEGDEDD 269

Query: 211 LFSSLKENSF 240
           + SS  + SF
Sbjct: 270 MISSFLKGSF 279


>ref|XP_002526678.1| breast cancer type 2 susceptibility protein brca2, putative
           [Ricinus communis] gi|223533978|gb|EEF35700.1| breast
           cancer type 2 susceptibility protein brca2, putative
           [Ricinus communis]
          Length = 1156

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = +1

Query: 34  PGHMSSDMCKSSGKTPTVKFQTAGGRSISVSNDALQRAMSLLGDPEFGDLPINEGADGPL 213
           P  + S++  S  K P++KF TAGGRS+SVS+DAL+RA SLLGDP+ G+    E    P 
Sbjct: 213 PNLLQSEVHNSITKPPSIKFHTAGGRSLSVSSDALKRAKSLLGDPDLGNFLNEEDVVDPA 272

Query: 214 FSSLKEN 234
            S   EN
Sbjct: 273 LSVFNEN 279


>ref|XP_004156673.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101230245 [Cucumis sativus]
          Length = 1111

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/48 (58%), Positives = 34/48 (70%)
 Frame = +1

Query: 34  PGHMSSDMCKSSGKTPTVKFQTAGGRSISVSNDALQRAMSLLGDPEFG 177
           P     ++   + K P +KF TAGGRS+SVS+DALQRA SLLGDPE G
Sbjct: 205 PSFRQIELPNKAPKAPPIKFHTAGGRSLSVSSDALQRARSLLGDPELG 252


Top