BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039919
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japo...    98   8e-19
emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group] g...    98   8e-19
ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containi...    96   3e-18
ref|XP_003603587.1| Pentatricopeptide repeat-containing protein ...    96   3e-18
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18

>gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 43/78 (55%), Positives = 62/78 (79%)
 Frame = -2

Query: 241 MVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPD 62
           MV GY K GK ++A S+FN MP K + +W+AMI GY ++S+P EAL++FH MQ +GVKPD
Sbjct: 242 MVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPD 301

Query: 61  QITVVSILHSCALLGALE 8
           +IT++S++ +CA +GALE
Sbjct: 302 EITMLSVISACANVGALE 319



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/80 (36%), Positives = 44/80 (55%)
 Frame = -2

Query: 241 MVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPD 62
           +V  Y   G+ + AR +F+ MP + L  W  M+  Y QA    EAL +FH M+ + V PD
Sbjct: 110 LVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPD 169

Query: 61  QITVVSILHSCALLGALELG 2
           Q+ + ++L +CA    L  G
Sbjct: 170 QVIIATVLSTCAHTRNLRFG 189


>emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
           gi|215697200|dbj|BAG91194.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 408

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 43/78 (55%), Positives = 62/78 (79%)
 Frame = -2

Query: 241 MVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGVKPD 62
           MV GY K GK ++A S+FN MP K + +W+AMI GY ++S+P EAL++FH MQ +GVKPD
Sbjct: 82  MVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPD 141

Query: 61  QITVVSILHSCALLGALE 8
           +IT++S++ +CA +GALE
Sbjct: 142 EITMLSVISACANVGALE 159


>ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
           gi|449493602|ref|XP_004159370.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 41/83 (49%), Positives = 60/83 (72%)
 Frame = -2

Query: 250 WNVMVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAGV 71
           WN MV GY K+G+   AR +FN+MP + + +W  +I GY Q +RP EA+ +F +MQL  V
Sbjct: 191 WNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEV 250

Query: 70  KPDQITVVSILHSCALLGALELG 2
           +PD+I ++++L +CA LGALELG
Sbjct: 251 EPDEIAMLAVLSACADLGALELG 273


>ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355492635|gb|AES73838.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 568

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 37/84 (44%), Positives = 63/84 (75%)
 Frame = -2

Query: 253 SWNVMVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAG 74
           SWN ++ GY K+G+ + AR +F+DMP++T+ +W  MI GY +     +AL +F +MQ+ G
Sbjct: 179 SWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVG 238

Query: 73  VKPDQITVVSILHSCALLGALELG 2
           ++PD+I+++++L +CA LGALE+G
Sbjct: 239 IEPDEISIIAVLPACAQLGALEVG 262


>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449470513|ref|XP_004152961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449523079|ref|XP_004168552.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 42/85 (49%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = -2

Query: 253 SWNVMVCGYTKIGKFDVARSMFNDMPLKTLPTWNAMIVGYNQASRPAEALSIFHQMQLAG 74
           SW +M+ GY K+G +D AR +FN MP+K +  WN +I  Y Q  +P EAL+IF+++QL+ 
Sbjct: 295 SWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSK 354

Query: 73  V-KPDQITVVSILHSCALLGALELG 2
           + KPD++T+VS L +CA LGA++LG
Sbjct: 355 IAKPDEVTLVSTLSACAQLGAIDLG 379